EWM23400.1, cds7274 (CDS) Nannochloropsis gaditana

Overview
NameEWM23400.1
Unique Namecds7274
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:255641..255679 -
Alignment locationCM002471.1:254874..255377 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23400.1
ProductTranslationally controlled tumor protein
Orig transcript idgnl|cribi|Naga_100430g3.1390.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:255641..255679 -
CM002471.1supercontigCM002471.1:254874..255377 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR011057Mss4-like
IPR018105Translational_control_tumour_p
IPR011323Mss4/transl-control_tumor
Homology
BLAST of EWM23400.1 vs. NCBI_GenBank
Match: gi|553180370|ref|XP_005853391.1| (translationally controlled tumor protein [Nannochloropsis gaditana CCMP526] >gi|422295669|gb|EKU22968.1| translationally controlled tumor protein [Nannochloropsis gaditana CCMP526] >gi|585104413|gb|EWM23400.1| Translationally controlled tumor protein [Nannochloropsis gaditana])

HSP 1 Score: 361.688 bits (927), Expect = 2.458e-126
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0
Query:    1 MIVYKDVISGDEVVSDALKIEPVKENGEDVPGLFEVDSAMVAVGGGDIDIGCGNAFGGAGEDEGADDNVQKENNVSGSSGFNYTAMPFSSKGEFKSWVKDYVRNVRQALKANGVAVEEIKKFMEEAPGFVKWLVDKYDDLEFFMSKSMNPDAGLIFSYYKDGAHCPTFVYIKSGYKVVKF 180
            MIVYKDVISGDEVVSDALKIEPVKENGEDVPGLFEVDSAMVAVGGGDIDIGCGNAFGGAGEDEGADDNVQKENNVSGSSGFNYTAMPFSSKGEFKSWVKDYVRNVRQALKANGVAVEEIKKFMEEAPGFVKWLVDKYDDLEFFMSKSMNPDAGLIFSYYKDGAHCPTFVYIKSGYKVVKF
Sbjct:    1 MIVYKDVISGDEVVSDALKIEPVKENGEDVPGLFEVDSAMVAVGGGDIDIGCGNAFGGAGEDEGADDNVQKENNVSGSSGFNYTAMPFSSKGEFKSWVKDYVRNVRQALKANGVAVEEIKKFMEEAPGFVKWLVDKYDDLEFFMSKSMNPDAGLIFSYYKDGAHCPTFVYIKSGYKVVKF 180          
BLAST of EWM23400.1 vs. NCBI_GenBank
Match: gi|298705970|emb|CBJ29091.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 179.104 bits (453), Expect = 2.910e-54
Identity = 94/181 (51.93%), Postives = 122/181 (67.40%), Query Frame = 0
Query:    1 MIVYKDVISGDEVVSDALKIEPVKEN-GEDVPGLFEVDSAMVAVGGGDIDIGCGNAFGGAGEDEGADDNVQKENNVSGSSGFNYTAMPFSSKGEFKSWVKDYVRNVRQALKANGVAVEEIKKFMEEAPGFVKWLVDKYDDLEFFMSKSMNPDAGLIFSYYKDGAHCPTFVYIKSGYKVVKF 180
            MIVYKD+ISGDE+++DA    PV  N GE V G+FEV+S+    G  ++DIGCGNAFGG  E+E  DD+V+K NNV     F YT +PF SK E K ++K+YVR+VR  LK  G    EIK+FM +APG VK+L+ K+ D++ F  +SM  + G+ F YYKDGAH PTF YI    +  KF
Sbjct:    1 MIVYKDLISGDEMMTDAFPQNPVVGNDGETVEGMFEVESSTAVKGSDNVDIGCGNAFGG--EEEVVDDSVEKVNNVIDP--FKYTEVPFGSKTELKDYLKEYVRSVRAKLKEKGTPQPEIKEFMAQAPGMVKFLLSKFADMQTFAGESMTAEGGMAFGYYKDGAHNPTFAYISKAMEAEKF 177          
BLAST of EWM23400.1 vs. NCBI_GenBank
Match: gi|325194359|emb|CCA28263.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 165.622 bits (418), Expect = 5.678e-49
Identity = 88/182 (48.35%), Postives = 125/182 (68.68%), Query Frame = 0
Query:    1 MIVYKDVISGDEVVSDALKIEPVKE-NGEDVPGLFEVDSAMVAVGGGDIDIGCGNAFGGAGEDEGADDNVQKENNVSGSS-GFNYTAMPFSSKGEFKSWVKDYVRNVRQALKANGVAVEEIKKFMEEAPGFVKWLVDKYDDLEFFMSKSMNPDAGLIFSYYKDGAHCPTFVYIKSGYKVVKF 180
            M+V++D+ + DEVVSDA +I+ VK+ NG+++PG+  V S  VA G   +DIGCG+AFG    D+  DD+V+  NN+S  S GF YT + F+SK E K+++K Y R + + LK + V  E++  F +EA   VK+LV KYDDL+++M +S + +AGL FSYY DGA  P F+YIK G K VKF
Sbjct:    1 MLVWQDIFTDDEVVSDANQIQLVKDVNGDEIPGMIMVQSRNVAKGSDSVDIGCGDAFGSG--DQEVDDSVETVNNISDDSIGFGYTEISFASKTELKNYLKSYFRKIMKHLKTSEVTDEKLDSFKKEAQEIVKFLVAKYDDLQYYMFRSCDTEAGLSFSYYPDGATTPVFMYIKWGLKEVKF 180          
BLAST of EWM23400.1 vs. NCBI_GenBank
Match: gi|675204571|ref|XP_008911170.1| (hypothetical protein PPTG_15650 [Phytophthora parasitica INRA-310] >gi|566015171|gb|ETI38082.1| hypothetical protein F443_16095 [Phytophthora parasitica P1569] >gi|567952630|gb|ETK78302.1| hypothetical protein L915_15640 [Phytophthora parasitica] >gi|567981289|gb|ETL31732.1| hypothetical protein L916_15536 [Phytophthora parasitica] >gi|568010777|gb|ETL84960.1| hypothetical protein L917_15358 [Phytophthora parasitica] >gi|568040681|gb|ETM38129.1| hypothetical protein L914_15491 [Phytophthora parasitica] >gi|568088540|gb|ETN03397.1| hypothetical protein PPTG_15650 [Phytophthora parasitica INRA-310] >gi|570318905|gb|ETO66853.1| hypothetical protein F444_16080 [Phytophthora parasitica P1976] >gi|570942710|gb|ETP07967.1| hypothetical protein F441_15924 [Phytophthora parasitica CJ01A1] >gi|570973351|gb|ETP36012.1| hypothetical protein F442_15946 [Phytophthora parasitica P10297] >gi|970658159|gb|KUF95960.1| uncharacterized protein AM587_10010820 [Phytophthora nicotianae] >gi|970658763|gb|KUF96487.1| D-threonine aldolase [Phytophthora nicotianae])

HSP 1 Score: 158.303 bits (399), Expect = 4.100e-46
Identity = 84/182 (46.15%), Postives = 122/182 (67.03%), Query Frame = 0
Query:    1 MIVYKDVISGDEVVSDALKIEPVKE-NGEDVPGLFEVDSAMVAVGGGDIDIGCGNAFGGAGEDEGADDNVQKENNVSGSS-GFNYTAMPFSSKGEFKSWVKDYVRNVRQALKANGVAVEEIKKFMEEAPGFVKWLVDKYDDLEFFMSKSMNPDAGLIFSYYKDGAHCPTFVYIKSGYKVVKF 180
            M+V++DV + DEV+SD+ K+ P K+  G +VPG+F+V+S  VA G  ++DIGCG+AFGG  E+E  DD+V+  NNV   S GF Y    F +KGE K+++K Y R   + LK+ G + E + +F  +A   VK+LV  + +L+F+M KS + +AGL ++YY +GA  PTF YIK G K VKF
Sbjct:    1 MLVWQDVFTEDEVMSDSNKVLPCKDMEGNEVPGMFQVESKTVAKGSDNVDIGCGDAFGG--EEEQIDDSVETVNNVIDDSIGFGYIETGFDTKGELKTYLKSYFRKTMKHLKSTGASDETLTQFKSDAQEIVKFLVSMFKELQFYMFKSCDSEAGLAYAYYPEGALAPTFCYIKWGLKEVKF 180          
BLAST of EWM23400.1 vs. NCBI_GenBank
Match: gi|635364998|emb|CCI46588.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 158.303 bits (399), Expect = 4.673e-46
Identity = 87/182 (47.80%), Postives = 121/182 (66.48%), Query Frame = 0
Query:    1 MIVYKDVISGDEVVSDALKIEPVKEN-GEDVPGLFEVDSAMVAVGGGDIDIGCGNAFGGAGEDEGADDNVQKENNVSGSS-GFNYTAMPFSSKGEFKSWVKDYVRNVRQALKANGVAVEEIKKFMEEAPGFVKWLVDKYDDLEFFMSKSMNPDAGLIFSYYKDGAHCPTFVYIKSGYKVVKF 180
            M+V++D+ + DEVVSDA K EPVK++ GE++PGLF V S  VAVG   +DIGCG+AFG    D+  DD+V+  NN+S +S GF YT + F+SK E KS++K Y R +           + +  F  +A   VK+L+ KY+DL+++M +S + +AGL FSYY DGA  P F+YIK G K VKF
Sbjct:    1 MLVWQDIFTNDEVVSDANKPEPVKDSEGEEIPGLFMVQSRNVAVGSDAVDIGCGDAFGSG--DQEVDDSVETVNNISDASIGFAYTEITFASKTELKSYLKSYFRKLLNHPTLKEGDEDTVTVFKSDAQKIVKFLLAKYNDLQYYMFRSCDTEAGLSFSYYPDGATTPVFMYIKWGLKEVKF 180          
BLAST of EWM23400.1 vs. NCBI_GenBank
Match: gi|375332097|gb|AFA52588.1| (hypothetical protein [Vaucheria litorea])

HSP 1 Score: 159.073 bits (401), Expect = 6.918e-46
Identity = 90/180 (50.00%), Postives = 127/180 (70.56%), Query Frame = 0
Query:    1 MIVYKDVISGDEVVSDALKIEPVKEN-GEDVPGLFEVDSAMVAVGGGDIDIGCGNAFGGAGEDEGADDNVQKENNVSGSSGFNYTAMPFSSKGEFKSWVKDYVRNVRQALKANGVAVEEIKKFMEEAPGFVKWLVDKYDDLEFFMSKSMNPDAGLIFSYYKDGAHCPTFVYIKSGYKVVK 179
            MIVY D+ISGDE+++DA KI+PV  + GE V GLFEV+S ++  GG ++DIGCGN+FGG G DE  DD+V+K NN+  S  FN +  PF S+ EFK ++K+YV+ VR ALK +G    +IK FM  AP  VK+L++ Y + +F+   S +P   + F+YYK+GA  P+FV+I++G KV K
Sbjct:    1 MIVYADLISGDEMMTDAFKIKPVMNSKGEKVEGLFEVESEIIVKGGDNVDIGCGNSFGGGGADEIVDDSVEKVNNIISS--FNLSECPFGSRNEFKEYLKEYVKKVRTALKDSGTPQPQIKAFMAIAPDMVKFLLENYKEYQFYTGSSYDPSGAMAFAYYKEGALTPSFVFIEAGLKVTK 178          
BLAST of EWM23400.1 vs. NCBI_GenBank
Match: gi|673044979|ref|XP_008876450.1| (hypothetical protein H310_11522 [Aphanomyces invadans] >gi|574467838|gb|ETV94859.1| hypothetical protein H310_11522 [Aphanomyces invadans])

HSP 1 Score: 152.525 bits (384), Expect = 8.061e-44
Identity = 80/182 (43.96%), Postives = 119/182 (65.38%), Query Frame = 0
Query:    1 MIVYKDVISGDEVVSDALKIEPVKEN-GEDVPGLFEVDSAMVAVGGGDIDIGCGNAFGGAGEDEGADDNVQKENNVSGSS-GFNYTAMPFSSKGEFKSWVKDYVRNVRQALKANGVAVEEIKKFMEEAPGFVKWLVDKYDDLEFFMSKSMNPDAGLIFSYYKDGAHCPTFVYIKSGYKVVKF 180
            M+V++D+ + DEVVSD+  +   K+  G  +PG+ EV S  V  GG ++D+GCG+AFGG  +D   DD+V+  NN+   S GF YT   F+SK + K+++K Y R + + LKA   + E + +F  +A   VK LV  YDDL+++M +SM+ +AG+ +SYYKDGA  P F++IK G K VKF
Sbjct:    1 MLVWQDIFTEDEVVSDSHNVYEAKDKEGNLIPGMIEVASKTVTKGGLNVDVGCGDAFGGGDQD--VDDSVETVNNIIDESVGFGYTETGFNSKADLKTYLKSYFRKIIKHLKATNASDETLDQFKSDAQEIVKALVGMYDDLQYYMFRSMDSEAGMAYSYYKDGATTPVFMFIKWGLKEVKF 180          
BLAST of EWM23400.1 vs. NCBI_GenBank
Match: gi|301093462|ref|XP_002997577.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262110540|gb|EEY68592.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 151.754 bits (382), Expect = 1.708e-43
Identity = 81/182 (44.51%), Postives = 121/182 (66.48%), Query Frame = 0
Query:    1 MIVYKDVISGDEVVSDALKIEPVKE-NGEDVPGLFEVDSAMVAVGGGDIDIGCGNAFGGAGEDEGADDNVQKENNVSGSS-GFNYTAMPFSSKGEFKSWVKDYVRNVRQALKANGVAVEEIKKFMEEAPGFVKWLVDKYDDLEFFMSKSMNPDAGLIFSYYKDGAHCPTFVYIKSGYKVVKF 180
            M+V++DV + DEV+SD+ K+ P K+  G +V G+F+V+S  VA G  ++DIGCG+AFGG  E+E  DD+V+  NNV   S GF Y    F +K E K+++K + R + + LK+ G + E + +F  +A   VK+LV  + +L+F+M KS + +AGL ++YY +GA  PTF YIK G K VKF
Sbjct:    1 MLVWQDVFTEDEVMSDSNKVVPCKDMEGNEVSGMFQVESKTVAKGSDNVDIGCGDAFGG--EEEQIDDSVETVNNVIDDSIGFGYIETGFDTKAELKTYLKSHFRKIMKHLKSTGASDETLAQFKSDAQEIVKFLVSMFKELQFYMFKSCDSEAGLAYAYYPEGAVAPTFCYIKWGLKEVKF 180          
BLAST of EWM23400.1 vs. NCBI_GenBank
Match: gi|1214690476|gb|OWZ05692.1| (hypothetical protein PHMEG_00022172 [Phytophthora megakarya])

HSP 1 Score: 151.369 bits (381), Expect = 2.880e-43
Identity = 79/182 (43.41%), Postives = 121/182 (66.48%), Query Frame = 0
Query:    1 MIVYKDVISGDEVVSDALKIEPVKE-NGEDVPGLFEVDSAMVAVGGGDIDIGCGNAFGGAGEDEGADDNVQKENNVSGSS-GFNYTAMPFSSKGEFKSWVKDYVRNVRQALKANGVAVEEIKKFMEEAPGFVKWLVDKYDDLEFFMSKSMNPDAGLIFSYYKDGAHCPTFVYIKSGYKVVKF 180
            M+V++D+ + DEV+SD+ K+ P K+  G +V G+F+V+S  VA G  ++DIGCG+AFGG  E+E  DD+V+  NNV   S GF Y    F +K E K+++K + R V + LK++  + E + +F  +A   VK+LV  + +L+F+M KS + +AG+ ++YY +GA  PTF YIK G K VKF
Sbjct:    1 MLVWQDIFTEDEVMSDSFKVVPCKDLEGNEVSGMFQVESKTVAKGADNVDIGCGDAFGG--EEEAVDDSVETVNNVIDESVGFGYNETGFDTKAELKTYLKSFFRKVMKNLKSSDASDETLAQFKSDAQEIVKFLVSMFKELQFYMFKSFDSEAGMAYAYYPEGAIAPTFCYIKWGLKEVKF 180          
BLAST of EWM23400.1 vs. NCBI_GenBank
Match: gi|698808112|ref|XP_009837085.1| (hypothetical protein H257_11761 [Aphanomyces astaci] >gi|574108150|gb|ETV73659.1| hypothetical protein H257_11761 [Aphanomyces astaci])

HSP 1 Score: 150.984 bits (380), Expect = 3.864e-43
Identity = 81/182 (44.51%), Postives = 117/182 (64.29%), Query Frame = 0
Query:    1 MIVYKDVISGDEVVSDALKIEPVKEN-GEDVPGLFEVDSAMVAVGGGDIDIGCGNAFGGAGEDEGADDNVQKENNVSGSS-GFNYTAMPFSSKGEFKSWVKDYVRNVRQALKANGVAVEEIKKFMEEAPGFVKWLVDKYDDLEFFMSKSMNPDAGLIFSYYKDGAHCPTFVYIKSGYKVVKF 180
            M+V+ D+ + DEVVSD+ K+   K+  G  +PG+ EV S  V+ GG ++D+GCG+AFGG   D   DD+V+  NN+   S GF YT   F+SK + K+++K Y R + + LKA   + E +  F  +A   VK LV  YDDL+++M +SM+ +AG+ FSYYK+G   P F+YIK G K VKF
Sbjct:    1 MLVWMDIFTDDEVVSDSHKVYEAKDKEGNLIPGMLEVASKTVSKGGVNVDVGCGDAFGGG--DNEVDDSVETVNNIIDESVGFGYTETGFNSKADLKTYLKSYFRKIIKHLKATNASDETLDSFKSDAQEIVKALVGLYDDLQYYMFRSMDSEAGMAFSYYKEGEATPVFLYIKWGLKEVKF 180          
The following BLAST results are available for this feature:
BLAST of EWM23400.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553180370|ref|XP_005853391.1|2.458e-126100.00translationally controlled tumor protein [Nannochl... [more]
gi|298705970|emb|CBJ29091.1|2.910e-5451.93conserved unknown protein [Ectocarpus siliculosus][more]
gi|325194359|emb|CCA28263.1|5.678e-4948.35conserved hypothetical protein [Albugo laibachii N... [more]
gi|675204571|ref|XP_008911170.1|4.100e-4646.15hypothetical protein PPTG_15650 [Phytophthora para... [more]
gi|635364998|emb|CCI46588.1|4.673e-4647.80unnamed protein product [Albugo candida][more]
gi|375332097|gb|AFA52588.1|6.918e-4650.00hypothetical protein [Vaucheria litorea][more]
gi|673044979|ref|XP_008876450.1|8.061e-4443.96hypothetical protein H310_11522 [Aphanomyces invad... [more]
gi|301093462|ref|XP_002997577.1|1.708e-4344.51conserved hypothetical protein [Phytophthora infes... [more]
gi|1214690476|gb|OWZ05692.1|2.880e-4343.41hypothetical protein PHMEG_00022172 [Phytophthora ... [more]
gi|698808112|ref|XP_009837085.1|3.864e-4344.51hypothetical protein H257_11761 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7291rna7291Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications