EWM23411.1, cds7266 (CDS) Nannochloropsis gaditana

Overview
NameEWM23411.1
Unique Namecds7266
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:230604..232856 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23411.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100077g12.5201.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:230604..232856 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR004088KH_dom_type_1
IPR004087KH_dom
Homology
BLAST of EWM23411.1 vs. NCBI_GenBank
Match: gi|585104427|gb|EWM23411.1| (hypothetical protein Naga_100077g12 [Nannochloropsis gaditana])

HSP 1 Score: 1529.61 bits (3959), Expect = 0.000e+0
Identity = 750/750 (100.00%), Postives = 750/750 (100.00%), Query Frame = 0
Query:    1 MLERPRHGEMEEMDHSSTNPPTRAGDEEEEDKMGKAGEQGAWERMNNAKVTATLAAAAAGVIQEAAMAIAEAGVYENEKEKKHVLSPRHAQDSLKASTPPPGDGESPEGSVSSPCPSRSPRHPGNRSHATGTGKGDPRGSGEGKMKTPRAQKSVAQTMEEDVDSSFFLQDATDRQLMTLVMLVPDTPPVLADLIGKGGSTVGEIQRLTGTQVSIERLVHRGRERKVALMGSILAVATAQQIITARIRHLEEHCGVGREYVPPPSTPKGYGEGAGTLSSSPSSSTSSSASSSASSSSSSSPSFESLGMPASQSLPPFPPGHHHHHPVWKDAQGCLKLKLCVPNCTVRHLIGRAGTVVSAIERDSGCILKFQSEGEMENGALGRILEMLGGGCYAHARACYHVCRKLADDRTLPTIWKGGDVFSARQKLVKVGEHGGMGGRERVMGGDGTRLGLAALSPSRSPAPFFVPPRSHLSGQAPVFVAKASLGEKGGEERSSLKPVPGDRERAFPSGKHLGSMVTRNSSHSVSVPSFPPVTAAGGDMGEGQTPLSFDSFSDQPFGTRQYRQFNSPDDLLSASSLLLPSQADPGGWFTGRSTFFWGGGDTRVEKGGNGGEEEKGDGWGAGDVMMMMARVKEQEREMRENSFAWDAKGSESVEEEWSGSEVTENGRGAYQVVHVLVPNKAVSFLIGKAGINVIAIEKKSGAKVEFTREASPPAAERLVNIKGNAKAVKIAEALLEAKTLEWQTSPTLIR 750
            MLERPRHGEMEEMDHSSTNPPTRAGDEEEEDKMGKAGEQGAWERMNNAKVTATLAAAAAGVIQEAAMAIAEAGVYENEKEKKHVLSPRHAQDSLKASTPPPGDGESPEGSVSSPCPSRSPRHPGNRSHATGTGKGDPRGSGEGKMKTPRAQKSVAQTMEEDVDSSFFLQDATDRQLMTLVMLVPDTPPVLADLIGKGGSTVGEIQRLTGTQVSIERLVHRGRERKVALMGSILAVATAQQIITARIRHLEEHCGVGREYVPPPSTPKGYGEGAGTLSSSPSSSTSSSASSSASSSSSSSPSFESLGMPASQSLPPFPPGHHHHHPVWKDAQGCLKLKLCVPNCTVRHLIGRAGTVVSAIERDSGCILKFQSEGEMENGALGRILEMLGGGCYAHARACYHVCRKLADDRTLPTIWKGGDVFSARQKLVKVGEHGGMGGRERVMGGDGTRLGLAALSPSRSPAPFFVPPRSHLSGQAPVFVAKASLGEKGGEERSSLKPVPGDRERAFPSGKHLGSMVTRNSSHSVSVPSFPPVTAAGGDMGEGQTPLSFDSFSDQPFGTRQYRQFNSPDDLLSASSLLLPSQADPGGWFTGRSTFFWGGGDTRVEKGGNGGEEEKGDGWGAGDVMMMMARVKEQEREMRENSFAWDAKGSESVEEEWSGSEVTENGRGAYQVVHVLVPNKAVSFLIGKAGINVIAIEKKSGAKVEFTREASPPAAERLVNIKGNAKAVKIAEALLEAKTLEWQTSPTLIR
Sbjct:    1 MLERPRHGEMEEMDHSSTNPPTRAGDEEEEDKMGKAGEQGAWERMNNAKVTATLAAAAAGVIQEAAMAIAEAGVYENEKEKKHVLSPRHAQDSLKASTPPPGDGESPEGSVSSPCPSRSPRHPGNRSHATGTGKGDPRGSGEGKMKTPRAQKSVAQTMEEDVDSSFFLQDATDRQLMTLVMLVPDTPPVLADLIGKGGSTVGEIQRLTGTQVSIERLVHRGRERKVALMGSILAVATAQQIITARIRHLEEHCGVGREYVPPPSTPKGYGEGAGTLSSSPSSSTSSSASSSASSSSSSSPSFESLGMPASQSLPPFPPGHHHHHPVWKDAQGCLKLKLCVPNCTVRHLIGRAGTVVSAIERDSGCILKFQSEGEMENGALGRILEMLGGGCYAHARACYHVCRKLADDRTLPTIWKGGDVFSARQKLVKVGEHGGMGGRERVMGGDGTRLGLAALSPSRSPAPFFVPPRSHLSGQAPVFVAKASLGEKGGEERSSLKPVPGDRERAFPSGKHLGSMVTRNSSHSVSVPSFPPVTAAGGDMGEGQTPLSFDSFSDQPFGTRQYRQFNSPDDLLSASSLLLPSQADPGGWFTGRSTFFWGGGDTRVEKGGNGGEEEKGDGWGAGDVMMMMARVKEQEREMRENSFAWDAKGSESVEEEWSGSEVTENGRGAYQVVHVLVPNKAVSFLIGKAGINVIAIEKKSGAKVEFTREASPPAAERLVNIKGNAKAVKIAEALLEAKTLEWQTSPTLIR 750          
BLAST of EWM23411.1 vs. NCBI_GenBank
Match: gi|553182381|ref|XP_005853721.1| (poly -binding protein 3 isoform 2, partial [Nannochloropsis gaditana CCMP526] >gi|422295338|gb|EKU22637.1| poly -binding protein 3 isoform 2, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 688.337 bits (1775), Expect = 0.000e+0
Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 0
Query:    1 MLERPRHGEMEEMDHSSTNPPTRAGDEEEEDKMGKAGEQGAWERMNNAKVTATLAAAAAGVIQEAAMAIAEAGVYENEKEKKHVLSPRHAQDSLKASTPPPGDGESPEGSVSSPCPSRSPRHPGNRSHATGTGKGDPRGSGEGKMKTPRAQKSVAQTMEEDVDSSFFLQDATDRQLMTLVMLVPDTPPVLADLIGKGGSTVGEIQRLTGTQVSIERLVHRGRERKVALMGSILAVATAQQIITARIRHLEEHCGVGREYVPPPSTPKGYGEGAGTLSSSPSSSTSSSASSSASSSSSSSPSFESLGMPASQSLPPFPPGHHHHHPVWKDAQGCLKLKL 338
            MLERPRHGEMEEMDHSSTNPPTRAGDEEEEDKMGKAGEQGAWERMNNAKVTATLAAAAAGVIQEAAMAIAEAGVYENEKEKKHVLSPRHAQDSLKASTPPPGDGESPEGSVSSPCPSRSPRHPGNRSHATGTGKGDPRGSGEGKMKTPRAQKSVAQTMEEDVDSSFFLQDATDRQLMTLVMLVPDTPPVLADLIGKGGSTVGEIQRLTGTQVSIERLVHRGRERKVALMGSILAVATAQQIITARIRHLEEHCGVGREYVPPPSTPKGYGEGAGTLSSSPSSSTSSSASSSASSSSSSSPSFESLGMPASQSLPPFPPGHHHHHPVWKDAQGCLKLKL
Sbjct:  129 MLERPRHGEMEEMDHSSTNPPTRAGDEEEEDKMGKAGEQGAWERMNNAKVTATLAAAAAGVIQEAAMAIAEAGVYENEKEKKHVLSPRHAQDSLKASTPPPGDGESPEGSVSSPCPSRSPRHPGNRSHATGTGKGDPRGSGEGKMKTPRAQKSVAQTMEEDVDSSFFLQDATDRQLMTLVMLVPDTPPVLADLIGKGGSTVGEIQRLTGTQVSIERLVHRGRERKVALMGSILAVATAQQIITARIRHLEEHCGVGREYVPPPSTPKGYGEGAGTLSSSPSSSTSSSASSSASSSSSSSPSFESLGMPASQSLPPFPPGHHHHHPVWKDAQGCLKLKL 466          
BLAST of EWM23411.1 vs. NCBI_GenBank
Match: gi|553182385|ref|XP_005853722.1| (rna binding protein [Nannochloropsis gaditana CCMP526] >gi|553185032|ref|XP_005854191.1| rna binding protein [Nannochloropsis gaditana CCMP526] >gi|422294868|gb|EKU22168.1| rna binding protein [Nannochloropsis gaditana CCMP526] >gi|422295339|gb|EKU22638.1| rna binding protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 248.054 bits (632), Expect = 3.155e-75
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
Query:  628 MARVKEQEREMRENSFAWDAKGSESVEEEWSGSEVTENGRGAYQVVHVLVPNKAVSFLIGKAGINVIAIEKKSGAKVEFTREASPPAAERLVNIKGNAKAVKIAEALLEAKTLEWQTSPTLIR 750
            MARVKEQEREMRENSFAWDAKGSESVEEEWSGSEVTENGRGAYQVVHVLVPNKAVSFLIGKAGINVIAIEKKSGAKVEFTREASPPAAERLVNIKGNAKAVKIAEALLEAKTLEWQTSPTLIR
Sbjct:    1 MARVKEQEREMRENSFAWDAKGSESVEEEWSGSEVTENGRGAYQVVHVLVPNKAVSFLIGKAGINVIAIEKKSGAKVEFTREASPPAAERLVNIKGNAKAVKIAEALLEAKTLEWQTSPTLIR 123          
BLAST of EWM23411.1 vs. NCBI_GenBank
Match: gi|1035240706|ref|XP_016892110.1| (PREDICTED: poly(rC)-binding protein 2-like isoform X6 [Cynoglossus semilaevis])

HSP 1 Score: 62.3882 bits (150), Expect = 8.382e-7
Identity = 68/225 (30.22%), Postives = 102/225 (45.33%), Query Frame = 0
Query:  149 RAQKSVAQTMEEDVDSSFFLQDATDRQLMTLVMLVPDTPPVLADLIGKGGSTVGEIQRLTGTQVSIE-RLVHRGRERKVALMGSILAVATAQQIITARIRHLEEHCGVGREYVPPPSTPKGYGEGAGTLSSSPSSSTSSSASSSASSSSSS-SPSFESLGMPASQSLP-PFPPGHHHHHPVWKDAQ-GCLKLKLCVPNCTVRHLIGRAGTVVSAIERDSGCILKF 369
            +A   + + +EED+ SS     AT +  +TL ++VP +      LIGKGG  + EI+  TG QV +   ++    ER + + G      T Q I    I  +++ C V  E     S PKG      T+   P  S S    +   SSS++ SP    L   A Q  P P  P +     +   AQ GC ++   +PN  +  +IGR G  +S I + SG  +K 
Sbjct:   70 KAFSMIIEKLEEDISSSMTNSTATSKPPVTLRIVVPASQ--CGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG------TPQSI----IECVKQICVVMLE-----SPPKGV-----TIPYRPKPSGSPVIFAGGQSSSAAISPQLTKLHQLAMQQTPFPIAPSNQGFAGIDASAQTGCQEMT--IPNDLIGCIIGRQGAKISEIRQMSGAQIKI 270          
BLAST of EWM23411.1 vs. NCBI_GenBank
Match: gi|1188097474|ref|XP_020795347.1| (poly(rC)-binding protein 3-like [Boleophthalmus pectinirostris])

HSP 1 Score: 63.1586 bits (152), Expect = 8.996e-7
Identity = 65/232 (28.02%), Postives = 101/232 (43.53%), Query Frame = 0
Query:  149 RAQKSVAQTMEEDVDSSFFLQDATDRQLMTLVMLVPDTPPVLADLIGKGGSTVGEIQRLTGTQVSIE-RLVHRGRERKVALMGSILAVATAQQIITARIRHLEEHCGVGREYVPP----PSTPKGYGEGAGTLSSSPSSSTSSSASSSASSSSSSSPSFESLGMPASQSLPPFPPGHHH-HHPVWKDAQGCLKLKLCVPNCTVRHLIGRAGTVVSAIERDSGCILKFQSEGE 374
            RA   +A   EED+ S+    + T +  +TL ++ P +      LIGKGGS + EI+  TG QV +   ++    ER V + G+        Q IT  +RH+   C V  E  P     P  PK    GA  +    +   ++ A +     + +   F  L   A Q LP  P G  H   P    +      +L +PN  +  +IGR G+ ++ I + SG  +K  S  +
Sbjct:   72 RAFSMIALKFEEDITSAMLNSNVTSKPPVTLRLVFPGSQ--CGSLIGKGGSKIKEIRESTGAQVQVAGDMLPESTERAVTISGT-------PQAITQCVRHI---CSVMLESPPKGATIPYRPKAMSAGAHAVL---APQHAAQAFAIPGQYAFAHQDFTKLQQLALQHLPLPPLGQSHPTFPGLDASASTSSQELSIPNDFIGCIIGRQGSKINEIRQASGAHIKIASAAD 288          
The following BLAST results are available for this feature:
BLAST of EWM23411.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585104427|gb|EWM23411.1|0.000e+0100.00hypothetical protein Naga_100077g12 [Nannochlorops... [more]
gi|553182381|ref|XP_005853721.1|0.000e+0100.00poly -binding protein 3 isoform 2, partial [Nannoc... [more]
gi|553182385|ref|XP_005853722.1|3.155e-75100.00rna binding protein [Nannochloropsis gaditana CCMP... [more]
gi|1035240706|ref|XP_016892110.1|8.382e-730.22PREDICTED: poly(rC)-binding protein 2-like isoform... [more]
gi|1188097474|ref|XP_020795347.1|8.996e-728.02poly(rC)-binding protein 3-like [Boleophthalmus pe... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7283rna7283Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications