EWM23426.1, cds7247 (CDS) Nannochloropsis gaditana

Overview
NameEWM23426.1
Unique Namecds7247
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:175583..175786 -
Alignment locationCM002471.1:175267..175368 -

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Properties
Property NameValue
Protein idEWM23426.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102493g1.3512.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:175583..175786 -
CM002471.1supercontigCM002471.1:175267..175368 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR011993PH-like_dom
Homology
BLAST of EWM23426.1 vs. NCBI_GenBank
Match: gi|585104450|gb|EWM23426.1| (hypothetical protein Naga_102493g1 [Nannochloropsis gaditana])

HSP 1 Score: 201.06 bits (510), Expect = 2.232e-65
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0
Query:    1 MQRRVVSSIPHPPISPPLPPSLPFQERNVIDCCRVEFLRPVSSTPDTPSCAFDVQSIERTWTLCAANETDLQQWLLLLASAIDMDVAVLPDDEVSFLVKPR 101
            MQRRVVSSIPHPPISPPLPPSLPFQERNVIDCCRVEFLRPVSSTPDTPSCAFDVQSIERTWTLCAANETDLQQWLLLLASAIDMDVAVLPDDEVSFLVKPR
Sbjct:    1 MQRRVVSSIPHPPISPPLPPSLPFQERNVIDCCRVEFLRPVSSTPDTPSCAFDVQSIERTWTLCAANETDLQQWLLLLASAIDMDVAVLPDDEVSFLVKPR 101          
BLAST of EWM23426.1 vs. NCBI_GenBank
Match: gi|1200643520|gb|OUX51096.1| (hypothetical protein CBE43_04830 [bacterium TMED283])

HSP 1 Score: 85.5001 bits (210), Expect = 5.030e-18
Identity = 39/77 (50.65%), Postives = 54/77 (70.13%), Query Frame = 0
Query:   25 QERNVIDCCRVEFLRPVSSTPDTPSCAFDVQSIERTWTLCAANETDLQQWLLLLASAIDMDVAVLPDDEVSFLVKPR 101
            +ER +ID C+V F+RPVS   D P  +FD+ +IER WTL A ++  +Q WL ++  AID D A++PDDE+ F VKPR
Sbjct:  158 RERRIIDLCKVTFVRPVSRHDDIPPNSFDICTIEREWTLSAESKASMQLWLQIVTRAIDEDTAIVPDDELVFTVKPR 234          
BLAST of EWM23426.1 vs. NCBI_GenBank
Match: gi|673041385|ref|XP_008874653.1| (hypothetical protein H310_10154 [Aphanomyces invadans] >gi|574469863|gb|ETV96876.1| hypothetical protein H310_10154 [Aphanomyces invadans])

HSP 1 Score: 59.3066 bits (142), Expect = 3.757e-8
Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 0
Query:   30 IDCCRVEFLRPVSSTPDTPSCAFDVQSIERTWTLCAANETDLQQWLLLLASAIDMDVAVLPDDEVSFLVK 99
            ID   V  +RP ++ PD P  +FD+ ++ RTW+ CAA+E D   WL +L   +D+  A++PD  +S  VK
Sbjct:  369 IDLASVLCIRPQAALPDAPPFSFDIVTLYRTWSFCAADEADRAAWLRVLGEHVDLAAALVPDAPLSCEVK 438          
BLAST of EWM23426.1 vs. NCBI_GenBank
Match: gi|698816204|ref|XP_009841131.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574103736|gb|ETV69274.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 58.9214 bits (141), Expect = 6.025e-8
Identity = 29/70 (41.43%), Postives = 43/70 (61.43%), Query Frame = 0
Query:   30 IDCCRVEFLRPVSSTPDTPSCAFDVQSIERTWTLCAANETDLQQWLLLLASAIDMDVAVLPDDEVSFLVK 99
            ID   V  +RP S+ PD P  AFD+ ++ RTW+ CA++E+D   WL +L   +D   A++PD  +S  VK
Sbjct:  402 IDLASVLCIRPQSALPDAPPFAFDIVTLYRTWSFCASDESDHATWLHILGVFVDRAAALVPDAPLSCDVK 471          
BLAST of EWM23426.1 vs. NCBI_GenBank
Match: gi|698816202|ref|XP_009841130.1| (hypothetical protein H257_14906 [Aphanomyces astaci] >gi|574103735|gb|ETV69273.1| hypothetical protein H257_14906 [Aphanomyces astaci])

HSP 1 Score: 58.5362 bits (140), Expect = 6.653e-8
Identity = 29/70 (41.43%), Postives = 43/70 (61.43%), Query Frame = 0
Query:   30 IDCCRVEFLRPVSSTPDTPSCAFDVQSIERTWTLCAANETDLQQWLLLLASAIDMDVAVLPDDEVSFLVK 99
            ID   V  +RP S+ PD P  AFD+ ++ RTW+ CA++E+D   WL +L   +D   A++PD  +S  VK
Sbjct:  402 IDLASVLCIRPQSALPDAPPFAFDIVTLYRTWSFCASDESDHATWLHILGVFVDRAAALVPDAPLSCDVK 471          
The following BLAST results are available for this feature:
BLAST of EWM23426.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585104450|gb|EWM23426.1|2.232e-65100.00hypothetical protein Naga_102493g1 [Nannochloropsi... [more]
gi|1200643520|gb|OUX51096.1|5.030e-1850.65hypothetical protein CBE43_04830 [bacterium TMED28... [more]
gi|673041385|ref|XP_008874653.1|3.757e-840.00hypothetical protein H310_10154 [Aphanomyces invad... [more]
gi|698816204|ref|XP_009841131.1|6.025e-841.43hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|698816202|ref|XP_009841130.1|6.653e-841.43hypothetical protein H257_14906 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7264rna7264Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications