EWM23446.1, cds7227 (CDS) Nannochloropsis gaditana

Overview
NameEWM23446.1
Unique Namecds7227
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:109831..110106 -
Alignment locationCM002471.1:109499..109707 -
Alignment locationCM002471.1:109131..109285 -
Alignment locationCM002471.1:108872..108976 -
Alignment locationCM002471.1:108636..108666 -

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Properties
Property NameValue
Start range108636
Start range.
Protein idEWM23446.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101389g1.4399.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:109831..110106 -
CM002471.1supercontigCM002471.1:109499..109707 -
CM002471.1supercontigCM002471.1:109131..109285 -
CM002471.1supercontigCM002471.1:108872..108976 -
CM002471.1supercontigCM002471.1:108636..108666 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM23446.1 vs. NCBI_GenBank
Match: gi|585104480|gb|EWM23446.1| (hypothetical protein Naga_101389g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 531.561 bits (1368), Expect = 0.000e+0
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0 
Query:    1 MKAFLRPEYAKRTKLPWLHVFVCCLGVFCLLPDIKAFSPCLHLPGSSFLPTVLEPQARLGGRGRRIRVGTCLQCENYEHGAHGAVQSSHEGQTDHVCQGKPALTCNEDPVVTKKGEKRGLDRVRSSKGLPGREEGEGGNVVELLKASSAVLLAAIGPNPWDRGLGINPTPPSALAMWGPYVGTLLFLTFGMRGLEPLKRFLYDRQKRRKQAKKAAQKPKKNQYYRTPSRLYDLAKAKLEQRQEGGTEAVEGTSDTAASG 259
            MKAFLRPEYAKRTKLPWLHVFVCCLGVFCLLPDIKAFSPCLHLPGSSFLPTVLEPQARLGGRGRRIRVGTCLQCENYEHGAHGAVQSSHEGQTDHVCQGKPALTCNEDPVVTKKGEKRGLDRVRSSKGLPGREEGEGGNVVELLKASSAVLLAAIGPNPWDRGLGINPTPPSALAMWGPYVGTLLFLTFGMRGLEPLKRFLYDRQKRRKQAKKAAQKPKKNQYYRTPSRLYDLAKAKLEQRQEGGTEAVEGTSDTAASG
Sbjct:    1 MKAFLRPEYAKRTKLPWLHVFVCCLGVFCLLPDIKAFSPCLHLPGSSFLPTVLEPQARLGGRGRRIRVGTCLQCENYEHGAHGAVQSSHEGQTDHVCQGKPALTCNEDPVVTKKGEKRGLDRVRSSKGLPGREEGEGGNVVELLKASSAVLLAAIGPNPWDRGLGINPTPPSALAMWGPYVGTLLFLTFGMRGLEPLKRFLYDRQKRRKQAKKAAQKPKKNQYYRTPSRLYDLAKAKLEQRQEGGTEAVEGTSDTAASG 259
[Close]
BLAST of EWM23446.1 vs. NCBI_GenBank
Match: gi|585104481|gb|EWM23447.1| (hypothetical protein Naga_101389g1 [Nannochloropsis gaditana])

HSP 1 Score: 510.375 bits (1313), Expect = 0.000e+0
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0 
Query:    1 MKAFLRPEYAKRTKLPWLHVFVCCLGVFCLLPDIKAFSPCLHLPGSSFLPTVLEPQARLGGRGRRIRVGTCLQCENYEHGAHGAVQSSHEGQTDHVCQGKPALTCNEDPVVTKKGEKRGLDRVRSSKGLPGREEGEGGNVVELLKASSAVLLAAIGPNPWDRGLGINPTPPSALAMWGPYVGTLLFLTFGMRGLEPLKRFLYDRQKRRKQAKKAAQKPKKNQYYRTPSRLYDLAKAKLEQRQEGGTEA 248
            MKAFLRPEYAKRTKLPWLHVFVCCLGVFCLLPDIKAFSPCLHLPGSSFLPTVLEPQARLGGRGRRIRVGTCLQCENYEHGAHGAVQSSHEGQTDHVCQGKPALTCNEDPVVTKKGEKRGLDRVRSSKGLPGREEGEGGNVVELLKASSAVLLAAIGPNPWDRGLGINPTPPSALAMWGPYVGTLLFLTFGMRGLEPLKRFLYDRQKRRKQAKKAAQKPKKNQYYRTPSRLYDLAKAKLEQRQEGGTEA
Sbjct:    1 MKAFLRPEYAKRTKLPWLHVFVCCLGVFCLLPDIKAFSPCLHLPGSSFLPTVLEPQARLGGRGRRIRVGTCLQCENYEHGAHGAVQSSHEGQTDHVCQGKPALTCNEDPVVTKKGEKRGLDRVRSSKGLPGREEGEGGNVVELLKASSAVLLAAIGPNPWDRGLGINPTPPSALAMWGPYVGTLLFLTFGMRGLEPLKRFLYDRQKRRKQAKKAAQKPKKNQYYRTPSRLYDLAKAKLEQRQEGGTEA 248
The following BLAST results are available for this feature:
BLAST of EWM23446.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Position :
0
Zoom :
x 1
01SequenceEWM23446.1EWM23447.1
Match NameE-valueIdentityDescription
gi|585104480|gb|EWM23446.1|0.000e+0100.00hypothetical protein Naga_101389g1, partial [Nanno... [more]
gi|585104481|gb|EWM23447.1|0.000e+0100.00hypothetical protein Naga_101389g1 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7244rna7244Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications