EWM29945.1, cds721 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29945.1 vs. NCBI_GenBank
Match: gi|585112533|gb|EWM29945.1| (16s rrna methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 835.484 bits (2157), Expect = 0.000e+0 Identity = 410/410 (100.00%), Postives = 410/410 (100.00%), Query Frame = 0 Query: 1 MVCIRASTVPIKAARHFVLLATTATLSLAACVLNHRPYRSYPAFVSRSAPPRGLLGSIKHEQNIPDPFTTRCQHFVQFPGHIEGKDSHKDVHIRHKFACRSHAGSGANQENVNTGGTDLGGLPQAPIVVDAKTKEAWPDLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLRKAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPKLKVPRQGGRGREKTGESEEKGPLEDEFGVPVPGVLYVTGLEPTPSTKMARGGGEGGREGGEGEEDGEEEEEEELAECVPDHVYPVQALLGPVYEGDKHVFHFSAAALVKGRVFVPEWEGGRGGRREGNG 410 MVCIRASTVPIKAARHFVLLATTATLSLAACVLNHRPYRSYPAFVSRSAPPRGLLGSIKHEQNIPDPFTTRCQHFVQFPGHIEGKDSHKDVHIRHKFACRSHAGSGANQENVNTGGTDLGGLPQAPIVVDAKTKEAWPDLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLRKAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPKLKVPRQGGRGREKTGESEEKGPLEDEFGVPVPGVLYVTGLEPTPSTKMARGGGEGGREGGEGEEDGEEEEEEELAECVPDHVYPVQALLGPVYEGDKHVFHFSAAALVKGRVFVPEWEGGRGGRREGNG Sbjct: 1 MVCIRASTVPIKAARHFVLLATTATLSLAACVLNHRPYRSYPAFVSRSAPPRGLLGSIKHEQNIPDPFTTRCQHFVQFPGHIEGKDSHKDVHIRHKFACRSHAGSGANQENVNTGGTDLGGLPQAPIVVDAKTKEAWPDLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLRKAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPKLKVPRQGGRGREKTGESEEKGPLEDEFGVPVPGVLYVTGLEPTPSTKMARGGGEGGREGGEGEEDGEEEEEEELAECVPDHVYPVQALLGPVYEGDKHVFHFSAAALVKGRVFVPEWEGGRGGRREGNG 410
BLAST of EWM29945.1 vs. NCBI_GenBank
Match: gi|585111203|gb|EWM28780.1| (16s rrna methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 209.149 bits (531), Expect = 2.937e-61 Identity = 116/262 (44.27%), Postives = 156/262 (59.54%), Query Frame = 0 Query: 131 AKTKEAWPDLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLRKAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPKLKVPRQGGRGREKTGESEEKGPLEDEFGVPVPGVLYVTGLEPTPSTKMARGGGEGGREGGEGEEDGEEEEEEELAECVPDHVYPVQALL-GPVYEGDKHVFHFSAAALVKG 391 A+ K +P+L P QW+++E L L+ E N K+NVISRKD++NVL +H+LP +G++ LL KA GT V+D+GTGGGFPGLPLAI CPQ+ LVD+ GKK+R V M+ RL L+NV H R+EEV+ +RF++V GRSVTA+PRF+ W + KL + PL+ GVP G+LY+ G G D E +EE+L +P YP+ L+ G VY GDK V HFS L +G Sbjct: 62 AQAKARFPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVR-ERFNFVTGRSVTAMPRFVGWVKDKL--------------HAAPSAPLK---GVPDDGILYIKG----------------------GVSD--ETQEEDLGGWMPTGRYPIGELIGGDVYGGDKSVLHFSVQDLRRG 281
BLAST of EWM29945.1 vs. NCBI_GenBank
Match: gi|1082596922|gb|OFZ27364.1| (16S rRNA (guanine(527)-N(7))-methyltransferase [Bacteroidetes bacterium RIFCSPHIGHO2_02_FULL_44_7]) HSP 1 Score: 153.68 bits (387), Expect = 5.663e-41 Identity = 85/174 (48.85%), Postives = 116/174 (66.67%), Query Frame = 0 Query: 137 WPDLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLRKAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPK-LKVPR---QGGRGREKTGE-SEEKGPLE 305 +PDL Q +Q +AL L N +INVISRKD +N H+L AL +A +++ P GT +LDIGTGGGFPG+PLAI P+ + LLVD+ GKKI+ V +++ L LKNV LHAR E+V+ Q FD+V+ R+VTA+P F+ W + K LKV R + G K G+ SEE P++ Sbjct: 11 FPDLTAEQMRQFDALQELYAHWNAQINVISRKDTENFYERHVLHALAIAKVIQFVP-GTQLLDIGTGGGFPGIPLAILFPECDFLLVDSIGKKIKVVDEVASALGLKNVRGLHARAEQVEEQ-FDFVISRAVTAMPTFINWTKGKFLKVDRNTLKNGILYLKGGDLSEEMAPVK 182
BLAST of EWM29945.1 vs. NCBI_GenBank
Match: gi|1189723198|ref|WP_085774116.1| (16S rRNA (guanine(527)-N(7))-methyltransferase RsmG [Nonlabens sediminis] >gi|1189023645|gb|ARN70265.1| 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG [Nonlabens sediminis]) HSP 1 Score: 150.214 bits (378), Expect = 1.465e-39 Identity = 73/156 (46.79%), Postives = 105/156 (67.31%), Query Frame = 0 Query: 134 KEAWPDLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLR------KAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPKLK 283 K+ +P + Q+ Q +AL +L E N++INVISRKDI + H+L +LG+ +++R P GT VLD+GTGGGFPG+PLAI P+ L+DA GKKI+ V A+ L L+NV T H R E+V+G RFD+VV R+VT +P F++W + K++ Sbjct: 6 KDYFPHITDEQFSQFQALESLYKEWNSQINVISRKDIDELYTRHVLHSLGIVSVVRFRESLPNTPGGTRVLDVGTGGGFPGIPLAIMFPKTKFYLIDAIGKKIKVVNAVVEALGLQNVTTEHGRAEKVKG-RFDFVVSRAVTNMPDFVKWTRNKIR 160
BLAST of EWM29945.1 vs. NCBI_GenBank
Match: gi|1172810912|gb|OQP47565.1| (16S rRNA (guanine(527)-N(7))-methyltransferase [Niastella yeongjuensis]) HSP 1 Score: 149.828 bits (377), Expect = 1.830e-39 Identity = 69/147 (46.94%), Postives = 103/147 (70.07%), Query Frame = 0 Query: 139 DLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLRKAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPKLKVP 285 D P Q +Q AL L + N+KINVISRKD++++ H+L +L +AT P G++++D+GTGGGFPG+PLAI P++ LLVD+ GKK++ V A++A L LKNV T H R+EE++ ++FD+VV R+V + +W++P LK P Sbjct: 10 DFTPVQLQQFAALDELYNDWNSKINVISRKDMESLYEKHVLHSLAIATAFEFKP-GSTIVDLGTGGGFPGIPLAIFFPEVKFLLVDSIGKKLKVVDAVAAALELKNVTTRHTRVEEIKDRKFDFVVSRAVAPLKDLWQWSKPLLKKP 155
BLAST of EWM29945.1 vs. NCBI_GenBank
Match: gi|1173344691|ref|WP_081201314.1| (16S rRNA (guanine(527)-N(7))-methyltransferase RsmG [Niastella yeongjuensis] >gi|1095276766|emb|SEN76827.1| 16S rRNA (guanine527-N7)-methyltransferase [Niastella yeongjuensis]) HSP 1 Score: 149.828 bits (377), Expect = 1.952e-39 Identity = 69/147 (46.94%), Postives = 103/147 (70.07%), Query Frame = 0 Query: 139 DLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLRKAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPKLKVP 285 D P Q +Q AL L + N+KINVISRKD++++ H+L +L +AT P G++++D+GTGGGFPG+PLAI P++ LLVD+ GKK++ V A++A L LKNV T H R+EE++ ++FD+VV R+V + +W++P LK P Sbjct: 17 DFTPVQLQQFAALDELYNDWNSKINVISRKDMESLYEKHVLHSLAIATAFEFKP-GSTIVDLGTGGGFPGIPLAIFFPEVKFLLVDSIGKKLKVVDAVAAALELKNVTTRHTRVEEIKDRKFDFVVSRAVAPLKDLWQWSKPLLKKP 162
BLAST of EWM29945.1 vs. NCBI_GenBank
Match: gi|754917869|ref|WP_042275879.1| (MULTISPECIES: 16S rRNA methyltransferase G [Nonlabens] >gi|946540752|gb|ALM20678.1| 16S rRNA methyltransferase [Nonlabens sp. MIC269]) HSP 1 Score: 149.058 bits (375), Expect = 3.199e-39 Identity = 73/156 (46.79%), Postives = 105/156 (67.31%), Query Frame = 0 Query: 134 KEAWPDLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLR------KAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPKLK 283 K+ +P + Q+ Q +AL +L E N++INVISRKDI + H+L +LG+ +++R P GT VLD+GTGGGFPG+PLAI P+ L+DA GKKI+ V A+ L L+NV T H R E+V+G RFD+VV R+VT +P F++W + K++ Sbjct: 6 KDYFPHITDEQFSQFQALESLYKEWNSQINVISRKDIDELYTRHVLHSLGIVSVVRFRESLPNTPGGTRVLDVGTGGGFPGIPLAIMFPKTKFHLIDAIGKKIKVVNAVVEALGLQNVTTEHGRAEKVKG-RFDFVVSRAVTNMPDFVKWTRNKIR 160
BLAST of EWM29945.1 vs. NCBI_GenBank
Match: gi|946937474|ref|WP_055859379.1| (16S rRNA methyltransferase G [Chryseobacterium sp. Leaf180] >gi|945132429|gb|KQR94745.1| 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG [Chryseobacterium sp. Leaf180]) HSP 1 Score: 149.058 bits (375), Expect = 3.729e-39 Identity = 74/154 (48.05%), Postives = 104/154 (67.53%), Query Frame = 0 Query: 137 WPDLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLRKAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPKLKVPRQGGR 290 +PDL Q Q E L L E N KINVISRKD++++ HIL +LG+A +++ AP GT +LD+GTGGGFPG+PLAI P+ + L+D+ GKKI V +S L+LKNV +H R E+V+ ++F +VV R+VT +P FLRW + K + + R Sbjct: 10 FPDLTEQQISQFEKLEALYNEWNEKINVISRKDMESLYEKHILHSLGIAKVMQFAP-GTKILDVGTGGGFPGIPLAILFPEAHFTLIDSIGKKITVVNTVSEGLDLKNVKAIHGRAEKVK-EKFHFVVSRAVTQMPEFLRWLKGKFEKEQLNSR 161
BLAST of EWM29945.1 vs. NCBI_GenBank
Match: gi|678227137|dbj|GAK95402.1| (rRNA small subunit methyltransferase [Nonlabens sediminis]) HSP 1 Score: 149.058 bits (375), Expect = 4.036e-39 Identity = 73/156 (46.79%), Postives = 105/156 (67.31%), Query Frame = 0 Query: 134 KEAWPDLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLR------KAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPKLK 283 K+ +P + Q+ Q +AL +L E N++INVISRKDI + H+L +LG+ +++R P GT VLD+GTGGGFPG+PLAI P+ L+DA GKKI+ V A+ L L+NV T H R E+V+G RFD+VV R+VT +P F++W + K++ Sbjct: 16 KDYFPHITDEQFSQFQALESLYKEWNSQINVISRKDIDELYTRHVLHSLGIVSVVRFRESLPNTPGGTRVLDVGTGGGFPGIPLAIMFPKTKFHLIDAIGKKIKVVNAVVEALGLQNVTTEHGRAEKVKG-RFDFVVSRAVTNMPDFVKWTRNKIR 170
BLAST of EWM29945.1 vs. NCBI_GenBank
Match: gi|754940587|ref|WP_042296924.1| (16S rRNA methyltransferase G [Nonlabens ulvanivorans]) HSP 1 Score: 149.058 bits (375), Expect = 4.120e-39 Identity = 81/194 (41.75%), Postives = 115/194 (59.28%), Query Frame = 0 Query: 134 KEAWPDLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLR------KAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPKLKVPR----QGGRGREKTGE-SEEKGPLEDEFGVPVPGVL 316 K +P L Q +Q L +L E N++INVISRKDI + H+L +LG+A ++R P GT V+D+GTGGGFPG+PLAI P+ N L+DA GKKI+ V A+ L LKNV T H R E+V+G +FD++V R+VT +P F+ W + K++ + G K G+ +EE P D + +P Sbjct: 6 KNYFPHLSDHQMEQFAQLGDLYAEWNSQINVISRKDIDQLYTRHVLHSLGIACVVRFRESLPNTPGGTRVMDVGTGGGFPGIPLAIMFPKTNFHLIDAIGKKIKVVDAVVEALQLKNVTTQHGRAEKVKG-KFDFIVSRAVTNMPDFVSWTRNKIRKDSYHEIENGILYLKGGDLTEELKPFPDTYIYELPDYF 198 The following BLAST results are available for this feature:
BLAST of EWM29945.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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