EWM29945.1, cds721 (CDS) Nannochloropsis gaditana

Overview
NameEWM29945.1
Unique Namecds721
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:261679..262191 +
Alignment locationCM002456.1:262396..263112 +
Alignment locationCM002456.1:263497..263499 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29945.1
Product16s rrna methyltransferase
Orig transcript idgnl|cribi|Naga_100247g3.2328.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:261679..262191 +
CM002456.1supercontigCM002456.1:262396..263112 +
CM002456.1supercontigCM002456.1:263497..263499 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006364rRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0008649rRNA methyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR003682rRNA_ssu_MeTfrase_G
Homology
BLAST of EWM29945.1 vs. NCBI_GenBank
Match: gi|585112533|gb|EWM29945.1| (16s rrna methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 835.484 bits (2157), Expect = 0.000e+0
Identity = 410/410 (100.00%), Postives = 410/410 (100.00%), Query Frame = 0
Query:    1 MVCIRASTVPIKAARHFVLLATTATLSLAACVLNHRPYRSYPAFVSRSAPPRGLLGSIKHEQNIPDPFTTRCQHFVQFPGHIEGKDSHKDVHIRHKFACRSHAGSGANQENVNTGGTDLGGLPQAPIVVDAKTKEAWPDLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLRKAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPKLKVPRQGGRGREKTGESEEKGPLEDEFGVPVPGVLYVTGLEPTPSTKMARGGGEGGREGGEGEEDGEEEEEEELAECVPDHVYPVQALLGPVYEGDKHVFHFSAAALVKGRVFVPEWEGGRGGRREGNG 410
            MVCIRASTVPIKAARHFVLLATTATLSLAACVLNHRPYRSYPAFVSRSAPPRGLLGSIKHEQNIPDPFTTRCQHFVQFPGHIEGKDSHKDVHIRHKFACRSHAGSGANQENVNTGGTDLGGLPQAPIVVDAKTKEAWPDLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLRKAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPKLKVPRQGGRGREKTGESEEKGPLEDEFGVPVPGVLYVTGLEPTPSTKMARGGGEGGREGGEGEEDGEEEEEEELAECVPDHVYPVQALLGPVYEGDKHVFHFSAAALVKGRVFVPEWEGGRGGRREGNG
Sbjct:    1 MVCIRASTVPIKAARHFVLLATTATLSLAACVLNHRPYRSYPAFVSRSAPPRGLLGSIKHEQNIPDPFTTRCQHFVQFPGHIEGKDSHKDVHIRHKFACRSHAGSGANQENVNTGGTDLGGLPQAPIVVDAKTKEAWPDLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLRKAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPKLKVPRQGGRGREKTGESEEKGPLEDEFGVPVPGVLYVTGLEPTPSTKMARGGGEGGREGGEGEEDGEEEEEEELAECVPDHVYPVQALLGPVYEGDKHVFHFSAAALVKGRVFVPEWEGGRGGRREGNG 410          
BLAST of EWM29945.1 vs. NCBI_GenBank
Match: gi|585111203|gb|EWM28780.1| (16s rrna methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 209.149 bits (531), Expect = 2.937e-61
Identity = 116/262 (44.27%), Postives = 156/262 (59.54%), Query Frame = 0
Query:  131 AKTKEAWPDLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLRKAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPKLKVPRQGGRGREKTGESEEKGPLEDEFGVPVPGVLYVTGLEPTPSTKMARGGGEGGREGGEGEEDGEEEEEEELAECVPDHVYPVQALL-GPVYEGDKHVFHFSAAALVKG 391
            A+ K  +P+L P QW+++E L  L+ E N K+NVISRKD++NVL +H+LP +G++ LL KA  GT V+D+GTGGGFPGLPLAI CPQ+   LVD+ GKK+R V  M+ RL L+NV   H R+EEV+ +RF++V GRSVTA+PRF+ W + KL               +    PL+   GVP  G+LY+ G                      G  D  E +EE+L   +P   YP+  L+ G VY GDK V HFS   L +G
Sbjct:   62 AQAKARFPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVR-ERFNFVTGRSVTAMPRFVGWVKDKL--------------HAAPSAPLK---GVPDDGILYIKG----------------------GVSD--ETQEEDLGGWMPTGRYPIGELIGGDVYGGDKSVLHFSVQDLRRG 281          
BLAST of EWM29945.1 vs. NCBI_GenBank
Match: gi|1082596922|gb|OFZ27364.1| (16S rRNA (guanine(527)-N(7))-methyltransferase [Bacteroidetes bacterium RIFCSPHIGHO2_02_FULL_44_7])

HSP 1 Score: 153.68 bits (387), Expect = 5.663e-41
Identity = 85/174 (48.85%), Postives = 116/174 (66.67%), Query Frame = 0
Query:  137 WPDLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLRKAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPK-LKVPR---QGGRGREKTGE-SEEKGPLE 305
            +PDL   Q +Q +AL  L    N +INVISRKD +N    H+L AL +A +++  P GT +LDIGTGGGFPG+PLAI  P+ + LLVD+ GKKI+ V  +++ L LKNV  LHAR E+V+ Q FD+V+ R+VTA+P F+ W + K LKV R   + G    K G+ SEE  P++
Sbjct:   11 FPDLTAEQMRQFDALQELYAHWNAQINVISRKDTENFYERHVLHALAIAKVIQFVP-GTQLLDIGTGGGFPGIPLAILFPECDFLLVDSIGKKIKVVDEVASALGLKNVRGLHARAEQVEEQ-FDFVISRAVTAMPTFINWTKGKFLKVDRNTLKNGILYLKGGDLSEEMAPVK 182          
BLAST of EWM29945.1 vs. NCBI_GenBank
Match: gi|1189723198|ref|WP_085774116.1| (16S rRNA (guanine(527)-N(7))-methyltransferase RsmG [Nonlabens sediminis] >gi|1189023645|gb|ARN70265.1| 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG [Nonlabens sediminis])

HSP 1 Score: 150.214 bits (378), Expect = 1.465e-39
Identity = 73/156 (46.79%), Postives = 105/156 (67.31%), Query Frame = 0
Query:  134 KEAWPDLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLR------KAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPKLK 283
            K+ +P +   Q+ Q +AL +L  E N++INVISRKDI  +   H+L +LG+ +++R        P GT VLD+GTGGGFPG+PLAI  P+    L+DA GKKI+ V A+   L L+NV T H R E+V+G RFD+VV R+VT +P F++W + K++
Sbjct:    6 KDYFPHITDEQFSQFQALESLYKEWNSQINVISRKDIDELYTRHVLHSLGIVSVVRFRESLPNTPGGTRVLDVGTGGGFPGIPLAIMFPKTKFYLIDAIGKKIKVVNAVVEALGLQNVTTEHGRAEKVKG-RFDFVVSRAVTNMPDFVKWTRNKIR 160          
BLAST of EWM29945.1 vs. NCBI_GenBank
Match: gi|1172810912|gb|OQP47565.1| (16S rRNA (guanine(527)-N(7))-methyltransferase [Niastella yeongjuensis])

HSP 1 Score: 149.828 bits (377), Expect = 1.830e-39
Identity = 69/147 (46.94%), Postives = 103/147 (70.07%), Query Frame = 0
Query:  139 DLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLRKAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPKLKVP 285
            D  P Q +Q  AL  L  + N+KINVISRKD++++   H+L +L +AT     P G++++D+GTGGGFPG+PLAI  P++  LLVD+ GKK++ V A++A L LKNV T H R+EE++ ++FD+VV R+V  +    +W++P LK P
Sbjct:   10 DFTPVQLQQFAALDELYNDWNSKINVISRKDMESLYEKHVLHSLAIATAFEFKP-GSTIVDLGTGGGFPGIPLAIFFPEVKFLLVDSIGKKLKVVDAVAAALELKNVTTRHTRVEEIKDRKFDFVVSRAVAPLKDLWQWSKPLLKKP 155          
BLAST of EWM29945.1 vs. NCBI_GenBank
Match: gi|1173344691|ref|WP_081201314.1| (16S rRNA (guanine(527)-N(7))-methyltransferase RsmG [Niastella yeongjuensis] >gi|1095276766|emb|SEN76827.1| 16S rRNA (guanine527-N7)-methyltransferase [Niastella yeongjuensis])

HSP 1 Score: 149.828 bits (377), Expect = 1.952e-39
Identity = 69/147 (46.94%), Postives = 103/147 (70.07%), Query Frame = 0
Query:  139 DLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLRKAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPKLKVP 285
            D  P Q +Q  AL  L  + N+KINVISRKD++++   H+L +L +AT     P G++++D+GTGGGFPG+PLAI  P++  LLVD+ GKK++ V A++A L LKNV T H R+EE++ ++FD+VV R+V  +    +W++P LK P
Sbjct:   17 DFTPVQLQQFAALDELYNDWNSKINVISRKDMESLYEKHVLHSLAIATAFEFKP-GSTIVDLGTGGGFPGIPLAIFFPEVKFLLVDSIGKKLKVVDAVAAALELKNVTTRHTRVEEIKDRKFDFVVSRAVAPLKDLWQWSKPLLKKP 162          
BLAST of EWM29945.1 vs. NCBI_GenBank
Match: gi|754917869|ref|WP_042275879.1| (MULTISPECIES: 16S rRNA methyltransferase G [Nonlabens] >gi|946540752|gb|ALM20678.1| 16S rRNA methyltransferase [Nonlabens sp. MIC269])

HSP 1 Score: 149.058 bits (375), Expect = 3.199e-39
Identity = 73/156 (46.79%), Postives = 105/156 (67.31%), Query Frame = 0
Query:  134 KEAWPDLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLR------KAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPKLK 283
            K+ +P +   Q+ Q +AL +L  E N++INVISRKDI  +   H+L +LG+ +++R        P GT VLD+GTGGGFPG+PLAI  P+    L+DA GKKI+ V A+   L L+NV T H R E+V+G RFD+VV R+VT +P F++W + K++
Sbjct:    6 KDYFPHITDEQFSQFQALESLYKEWNSQINVISRKDIDELYTRHVLHSLGIVSVVRFRESLPNTPGGTRVLDVGTGGGFPGIPLAIMFPKTKFHLIDAIGKKIKVVNAVVEALGLQNVTTEHGRAEKVKG-RFDFVVSRAVTNMPDFVKWTRNKIR 160          
BLAST of EWM29945.1 vs. NCBI_GenBank
Match: gi|946937474|ref|WP_055859379.1| (16S rRNA methyltransferase G [Chryseobacterium sp. Leaf180] >gi|945132429|gb|KQR94745.1| 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG [Chryseobacterium sp. Leaf180])

HSP 1 Score: 149.058 bits (375), Expect = 3.729e-39
Identity = 74/154 (48.05%), Postives = 104/154 (67.53%), Query Frame = 0
Query:  137 WPDLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLRKAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPKLKVPRQGGR 290
            +PDL   Q  Q E L  L  E N KINVISRKD++++   HIL +LG+A +++ AP GT +LD+GTGGGFPG+PLAI  P+ +  L+D+ GKKI  V  +S  L+LKNV  +H R E+V+ ++F +VV R+VT +P FLRW + K +  +   R
Sbjct:   10 FPDLTEQQISQFEKLEALYNEWNEKINVISRKDMESLYEKHILHSLGIAKVMQFAP-GTKILDVGTGGGFPGIPLAILFPEAHFTLIDSIGKKITVVNTVSEGLDLKNVKAIHGRAEKVK-EKFHFVVSRAVTQMPEFLRWLKGKFEKEQLNSR 161          
BLAST of EWM29945.1 vs. NCBI_GenBank
Match: gi|678227137|dbj|GAK95402.1| (rRNA small subunit methyltransferase [Nonlabens sediminis])

HSP 1 Score: 149.058 bits (375), Expect = 4.036e-39
Identity = 73/156 (46.79%), Postives = 105/156 (67.31%), Query Frame = 0
Query:  134 KEAWPDLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLR------KAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPKLK 283
            K+ +P +   Q+ Q +AL +L  E N++INVISRKDI  +   H+L +LG+ +++R        P GT VLD+GTGGGFPG+PLAI  P+    L+DA GKKI+ V A+   L L+NV T H R E+V+G RFD+VV R+VT +P F++W + K++
Sbjct:   16 KDYFPHITDEQFSQFQALESLYKEWNSQINVISRKDIDELYTRHVLHSLGIVSVVRFRESLPNTPGGTRVLDVGTGGGFPGIPLAIMFPKTKFHLIDAIGKKIKVVNAVVEALGLQNVTTEHGRAEKVKG-RFDFVVSRAVTNMPDFVKWTRNKIR 170          
BLAST of EWM29945.1 vs. NCBI_GenBank
Match: gi|754940587|ref|WP_042296924.1| (16S rRNA methyltransferase G [Nonlabens ulvanivorans])

HSP 1 Score: 149.058 bits (375), Expect = 4.120e-39
Identity = 81/194 (41.75%), Postives = 115/194 (59.28%), Query Frame = 0
Query:  134 KEAWPDLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLR------KAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPKLKVPR----QGGRGREKTGE-SEEKGPLEDEFGVPVPGVL 316
            K  +P L   Q +Q   L +L  E N++INVISRKDI  +   H+L +LG+A ++R        P GT V+D+GTGGGFPG+PLAI  P+ N  L+DA GKKI+ V A+   L LKNV T H R E+V+G +FD++V R+VT +P F+ W + K++       + G    K G+ +EE  P  D +   +P   
Sbjct:    6 KNYFPHLSDHQMEQFAQLGDLYAEWNSQINVISRKDIDQLYTRHVLHSLGIACVVRFRESLPNTPGGTRVMDVGTGGGFPGIPLAIMFPKTNFHLIDAIGKKIKVVDAVVEALQLKNVTTQHGRAEKVKG-KFDFIVSRAVTNMPDFVSWTRNKIRKDSYHEIENGILYLKGGDLTEELKPFPDTYIYELPDYF 198          
The following BLAST results are available for this feature:
BLAST of EWM29945.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112533|gb|EWM29945.1|0.000e+0100.0016s rrna methyltransferase [Nannochloropsis gadita... [more]
gi|585111203|gb|EWM28780.1|2.937e-6144.2716s rrna methyltransferase [Nannochloropsis gadita... [more]
gi|1082596922|gb|OFZ27364.1|5.663e-4148.8516S rRNA (guanine(527)-N(7))-methyltransferase [Ba... [more]
gi|1189723198|ref|WP_085774116.1|1.465e-3946.7916S rRNA (guanine(527)-N(7))-methyltransferase Rsm... [more]
gi|1172810912|gb|OQP47565.1|1.830e-3946.9416S rRNA (guanine(527)-N(7))-methyltransferase [Ni... [more]
gi|1173344691|ref|WP_081201314.1|1.952e-3946.9416S rRNA (guanine(527)-N(7))-methyltransferase Rsm... [more]
gi|754917869|ref|WP_042275879.1|3.199e-3946.79MULTISPECIES: 16S rRNA methyltransferase G [Nonlab... [more]
gi|946937474|ref|WP_055859379.1|3.729e-3948.0516S rRNA methyltransferase G [Chryseobacterium sp.... [more]
gi|678227137|dbj|GAK95402.1|4.036e-3946.79rRNA small subunit methyltransferase [Nonlabens se... [more]
gi|754940587|ref|WP_042296924.1|4.120e-3941.7516S rRNA methyltransferase G [Nonlabens ulvanivora... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna721rna721Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications