EWM23463.1, cds7209 (CDS) Nannochloropsis gaditana

Overview
NameEWM23463.1
Unique Namecds7209
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:59960..59995 -
Alignment locationCM002471.1:59633..59728 -
Alignment locationCM002471.1:59288..59476 -
Alignment locationCM002471.1:58951..59082 -

Link to JBrowse

Properties
Property NameValue
Start range58951
Start range.
Protein idEWM23463.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101315g2.4734.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:59960..59995 -
CM002471.1supercontigCM002471.1:59633..59728 -
CM002471.1supercontigCM002471.1:59288..59476 -
CM002471.1supercontigCM002471.1:58951..59082 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM23463.1 vs. NCBI_GenBank
Match: gi|585104520|gb|EWM23463.1| (hypothetical protein Naga_101315g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 303.908 bits (777), Expect = 1.817e-104
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0 
Query:    1 MDQTVSLGGSAPEERPATEAKGFDWAEKREEASRTVKETAAYLQEHGQKTVTYLKTHGAAAAGAAAATSQRTREEVVREWIKSTGLGSIVYRSLVPGHWRMPAISLGVTLALLAAAIAIVVATGGGALLILMLLVLTLFNQMVHAYCDGGE 151
            MDQTVSLGGSAPEERPATEAKGFDWAEKREEASRTVKETAAYLQEHGQKTVTYLKTHGAAAAGAAAATSQRTREEVVREWIKSTGLGSIVYRSLVPGHWRMPAISLGVTLALLAAAIAIVVATGGGALLILMLLVLTLFNQMVHAYCDGGE
Sbjct:    1 MDQTVSLGGSAPEERPATEAKGFDWAEKREEASRTVKETAAYLQEHGQKTVTYLKTHGAAAAGAAAATSQRTREEVVREWIKSTGLGSIVYRSLVPGHWRMPAISLGVTLALLAAAIAIVVATGGGALLILMLLVLTLFNQMVHAYCDGGE 151
The following BLAST results are available for this feature:
BLAST of EWM23463.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585104520|gb|EWM23463.1|1.817e-104100.00hypothetical protein Naga_101315g2, partial [Nanno... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7226rna7226Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications