EWM29953.1, cds720 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29953.1 vs. NCBI_GenBank
Match: gi|585112541|gb|EWM29953.1| (rieske (2fe-2s) domain protein [Nannochloropsis gaditana]) HSP 1 Score: 325.865 bits (834), Expect = 1.134e-112 Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0 Query: 1 MHLASTLLAIIAALTLSEAFLGLKSPGHLPFRRLPSLAATVPVGSVTELPPGERKVVDTEAGAVIVTNVGGSLYAVLAKCPHLGLPMKTGVIAIEGGEPTITCKFHNSKFALTDGKCKAWSESVFGIKGTEGIAGFVGGFGGAKGSPATVFPTSMSEEGIVSIEM 165 MHLASTLLAIIAALTLSEAFLGLKSPGHLPFRRLPSLAATVPVGSVTELPPGERKVVDTEAGAVIVTNVGGSLYAVLAKCPHLGLPMKTGVIAIEGGEPTITCKFHNSKFALTDGKCKAWSESVFGIKGTEGIAGFVGGFGGAKGSPATVFPTSMSEEGIVSIEM Sbjct: 1 MHLASTLLAIIAALTLSEAFLGLKSPGHLPFRRLPSLAATVPVGSVTELPPGERKVVDTEAGAVIVTNVGGSLYAVLAKCPHLGLPMKTGVIAIEGGEPTITCKFHNSKFALTDGKCKAWSESVFGIKGTEGIAGFVGGFGGAKGSPATVFPTSMSEEGIVSIEM 165
BLAST of EWM29953.1 vs. NCBI_GenBank
Match: gi|551662169|ref|XP_005833850.1| (hypothetical protein GUITHDRAFT_86526 [Guillardia theta CCMP2712] >gi|428177993|gb|EKX46870.1| hypothetical protein GUITHDRAFT_86526 [Guillardia theta CCMP2712]) HSP 1 Score: 135.576 bits (340), Expect = 1.845e-37 Identity = 69/132 (52.27%), Postives = 86/132 (65.15%), Query Frame = 0 Query: 33 RLPSLAATVPVGSVTELPPGERKVVDTEAGAVIVTNVGGSLYAVLAKCPHLGLPMKTGVIAIEGGEPTITCKFHNSKFALTDGKCKAWSESVFGIKGTEGIAGFVGGFGGAKGSPATVFPTSMSEEGIVSIE 164 R P +A VG+V E+PPGERK+ V+V N G++YA+ KCPHLGLPMKTG I+ +G P I CKFH SKF L DGKC WS V GI GT+ + GF+G GGAK SPATVF + EG + ++ Sbjct: 37 RGPRMAGE-KVGNVNEIPPGERKITKVGDQDVMVVNHKGTVYALSPKCPHLGLPMKTGEISDDG--PCIKCKFHGSKFKLDDGKCVEWSTGVLGIPGTQALGGFIGNVGGAKNSPATVFAVEVDAEGGIIVD 165
BLAST of EWM29953.1 vs. NCBI_GenBank
Match: gi|57335947|emb|CAH25375.1| (putative ferredoxin component, partial [Guillardia theta]) HSP 1 Score: 135.191 bits (339), Expect = 1.944e-37 Identity = 69/132 (52.27%), Postives = 86/132 (65.15%), Query Frame = 0 Query: 33 RLPSLAATVPVGSVTELPPGERKVVDTEAGAVIVTNVGGSLYAVLAKCPHLGLPMKTGVIAIEGGEPTITCKFHNSKFALTDGKCKAWSESVFGIKGTEGIAGFVGGFGGAKGSPATVFPTSMSEEGIVSIE 164 R P +A VG+V E+PPGERK+ V+V N G++YA+ KCPHLGLPMKTG I+ +G P I CKFH SKF L DGKC WS V GI GT+ + GF+G GGAK SPATVF + EG + ++ Sbjct: 28 RGPRMAGE-KVGNVNEIPPGERKITKVGDQDVMVVNHKGTVYALSPKCPHLGLPMKTGEISDDG--PCIKCKFHGSKFKLDDGKCVEWSTGVLGIPGTQALGGFIGNVGGAKNSPATVFAVEVDAEGGIIVD 156
BLAST of EWM29953.1 vs. NCBI_GenBank
Match: gi|1129204627|gb|OLQ07073.1| (hypothetical protein AK812_SmicGene9552 [Symbiodinium microadriaticum]) HSP 1 Score: 97.4413 bits (241), Expect = 3.179e-22 Identity = 58/155 (37.42%), Postives = 80/155 (51.61%), Query Frame = 0 Query: 11 IAALTLSEAFLGLKSPGHLPFRRLPSLAATVPVGSVTELPP--GERKVVDTEAGAVIVTNVGGSLYAVLAKCPHLGLPMKTGVIAIEGGEPTITCKFHNSKFALTDGKCKAWSESVFGIKGTEGIAGFVGGFGGAKGSPATVFPTSMSEEGIVSI 163 IA +T S F G +SP P L ++ A V + PP G+R VVD G ++V + G YAV AKCPHL LPMK G I P +TC FHNS+F + DG C W G + + IAG + GG K + + +++G +S+ Sbjct: 55 IALVTQSLDFAGFRSPARSPRTSLHAVCAQV------KEPPAEGDRVVVDGSDGPIVVAKIDGKYYAVDAKCPHLNLPMKKGKIENGPDGPRLTCNFHNSQFNMKDGLCTRWVTGALGFE-NDFIAGVMSNVGGEKKN-LQAYEVVEADDGSLSV 201
BLAST of EWM29953.1 vs. NCBI_GenBank
Match: gi|223995483|ref|XP_002287415.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976531|gb|EED94858.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 99.3673 bits (246), Expect = 2.069e-21 Identity = 51/114 (44.74%), Postives = 68/114 (59.65%), Query Frame = 0 Query: 38 AATVPVGSVTELPPGERKVVDTEAGAVIVTNVGGSLYAVLAKCPHLGLPMKTGVIAIEGGEPTITCKFHNSKFALTDGKCKAWSESVFGIKGTEGIAGFVGGFGGAKGSPATVF 151 A T+ SV E G+R+++D + G ++VT V GS YAV A CPHLGLPMK G ++ +GG PT+TC FHNS F L GKC W G++ I+G +G GG + F Sbjct: 340 ATTLSCPSVDE---GQREILDGDNGPILVTKVAGSYYAVDATCPHLGLPMKKGKVSNDGGTPTLTCSFHNSCFELGTGKCTKWVSGALGVENG-FISGIMGKVGGKQQDVKAYF 449
BLAST of EWM29953.1 vs. NCBI_GenBank
Match: gi|922854073|gb|KOO22639.1| (ferrochelatase [Chrysochromulina sp. CCMP291]) HSP 1 Score: 98.2117 bits (243), Expect = 7.948e-21 Identity = 52/118 (44.07%), Postives = 72/118 (61.02%), Query Frame = 0 Query: 49 LPP--GERKVVDTEAGAVIVTNVGGSLYAVLAKCPHLGLPMKTGVIAIEGGEPTITCKFHNSKFALTDGKCKAWSESVFGIKGTEGIAGFVGGFGGAKGSPATVFPTSMSEEGIVSIE 164 +PP +R VVD G ++VT V GS YAV A CPHLGLPMK G +A T+TC FHNS +A+ DG CK W GI+ E AG +G GG K S + + +++++G +++E Sbjct: 47 VPPADNDRTVVDGPNGPILVTKVKGSYYAVDATCPHLGLPMKRGKVADGADGVTLTCSFHNSCWAMKDGSCKKWVTGALGIE-NEAAAGVMGKLGGQKRSIKS-YKVAVNQDGSLTLE 162
BLAST of EWM29953.1 vs. NCBI_GenBank
Match: gi|551651649|ref|XP_005828605.1| (hypothetical protein GUITHDRAFT_153789 [Guillardia theta CCMP2712] >gi|428172718|gb|EKX41625.1| hypothetical protein GUITHDRAFT_153789 [Guillardia theta CCMP2712]) HSP 1 Score: 87.8113 bits (216), Expect = 2.017e-19 Identity = 51/102 (50.00%), Postives = 66/102 (64.71%), Query Frame = 0 Query: 64 VIVTNVGGSLYAVLAKCPHLGLPMKTGVIAIEGGEPTITCKFHNSKFALTDGKCKAWSESVFGIKGTEGIAGFVGGFGGAKGSPATVFPTSMSEEGIVSIEM 165 V++ N ++YA+ KCPHLGL +K+G I +G P ITCKFH SKF L G+C AWS+S GI GT I G VG GG K SPATV+ + EG V +++ Sbjct: 9 VLLVNHENTIYALNPKCPHLGLSLKSGKITDDGQGPVITCKFHQSKFNLKTGECAAWSQSFLGIPGTGIIGGVVGNMGGPKHSPATVYSVEVDGEGSVMVDI 110
BLAST of EWM29953.1 vs. NCBI_GenBank
Match: gi|551663263|ref|XP_005834396.1| (hypothetical protein GUITHDRAFT_162719, partial [Guillardia theta CCMP2712] >gi|428178541|gb|EKX47416.1| hypothetical protein GUITHDRAFT_162719, partial [Guillardia theta CCMP2712]) HSP 1 Score: 87.8113 bits (216), Expect = 2.729e-18 Identity = 52/131 (39.69%), Postives = 71/131 (54.20%), Query Frame = 0 Query: 48 ELPPGERKVVDTEAGAVIVTNVGGSLYAVLAKCPHLGLPMKTGVIAIEGGEP--TITCKFHNSKFALTD-GKCKAWSESVFGIKGTEGIAGFVGGF----------GGAKGSPATVFPTSMSEEGIVSIEM 165 ++ G+ KVV ++VT G L+A KCPHLGL +K G I + C FH SKF+L + GKCK WSESVFGIKGTE I +G F G K +PA V+ + E+G + +++ Sbjct: 64 DVAEGQSKVVTARNIKLVVTKKEGKLFAFNNKCPHLGLSLKRGQITGSDDRHGICVVCPFHKSKFSLEEEGKCKVWSESVFGIKGTESIGNKIGQFVAPMAKSVNPTGEKAAPAAVYGVKV-EDGEILVDL 193
BLAST of EWM29953.1 vs. NCBI_GenBank
Match: gi|397647658|gb|EJK77799.1| (hypothetical protein THAOC_00345 [Thalassiosira oceanica]) HSP 1 Score: 87.8113 bits (216), Expect = 4.218e-17 Identity = 40/87 (45.98%), Postives = 51/87 (58.62%), Query Frame = 0 Query: 34 LPSLAATVPVGSVTELPPGERKVVDTEAGAVIVTNVGGSLYAVLAKCPHLGLPMKTGVIAIEGGEPTITCKFHNSKFALTDGKCKAW 120 L S +A S + GER++V G ++VT V GS YAV A CPHL LPMK G I + G+P +TC FHNS F + G+C W Sbjct: 733 LSSRSAGSTSLSCQPMAEGEREIVKGPNGPILVTKVAGSYYAVDATCPHLNLPMKKGKITVNNGQPALTCNFHNSCFEMKTGRCTQW 819
BLAST of EWM29953.1 vs. NCBI_GenBank
Match: gi|1210102754|dbj|BAY21884.1| (Rieske (2Fe-2S) region [Calothrix sp. NIES-2100]) HSP 1 Score: 79.337 bits (194), Expect = 4.249e-16 Identity = 42/114 (36.84%), Postives = 59/114 (51.75%), Query Frame = 0 Query: 47 TELPPGERKVVDTEAGAVIVTNVGGSLYAVLAKCPHLGLPMKTGVIAIEGGEPTITCKFHNSKFALTDGKCKAWSESVFGIKGTEGIAGFVGGFGGAKGSPATVFPTSMSEEGI 160 ELPP +RKVV E ++++ N +YA+ CPH+ + ++ G I EG TI C FH S F ++ GKC AW I G++ +G F K VFPT + E I Sbjct: 10 NELPPNQRKVVKVENRSILLVNQNNQIYALENSCPHMKVSLEKGKITDEG---TIVCPFHRSAFEMSTGKCTAW------ITFPPGVSKVMGMFSKEKD--IAVFPTRVEEGNI 112 The following BLAST results are available for this feature:
BLAST of EWM29953.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|