EWM29953.1, cds720 (CDS) Nannochloropsis gaditana

Overview
NameEWM29953.1
Unique Namecds720
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:260166..260219 +
Alignment locationCM002456.1:260346..260445 +
Alignment locationCM002456.1:260551..260664 +
Alignment locationCM002456.1:260852..261081 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29953.1
Productrieske (2fe-2s) domain protein
Orig transcript idgnl|cribi|Naga_100247g2.2336.mrna
Genefdc
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:260166..260219 +
CM002456.1supercontigCM002456.1:260346..260445 +
CM002456.1supercontigCM002456.1:260551..260664 +
CM002456.1supercontigCM002456.1:260852..261081 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
GO:00515372 iron, 2 sulfur cluster binding
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR017941Rieske_2Fe-2S
Homology
BLAST of EWM29953.1 vs. NCBI_GenBank
Match: gi|585112541|gb|EWM29953.1| (rieske (2fe-2s) domain protein [Nannochloropsis gaditana])

HSP 1 Score: 325.865 bits (834), Expect = 1.134e-112
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
Query:    1 MHLASTLLAIIAALTLSEAFLGLKSPGHLPFRRLPSLAATVPVGSVTELPPGERKVVDTEAGAVIVTNVGGSLYAVLAKCPHLGLPMKTGVIAIEGGEPTITCKFHNSKFALTDGKCKAWSESVFGIKGTEGIAGFVGGFGGAKGSPATVFPTSMSEEGIVSIEM 165
            MHLASTLLAIIAALTLSEAFLGLKSPGHLPFRRLPSLAATVPVGSVTELPPGERKVVDTEAGAVIVTNVGGSLYAVLAKCPHLGLPMKTGVIAIEGGEPTITCKFHNSKFALTDGKCKAWSESVFGIKGTEGIAGFVGGFGGAKGSPATVFPTSMSEEGIVSIEM
Sbjct:    1 MHLASTLLAIIAALTLSEAFLGLKSPGHLPFRRLPSLAATVPVGSVTELPPGERKVVDTEAGAVIVTNVGGSLYAVLAKCPHLGLPMKTGVIAIEGGEPTITCKFHNSKFALTDGKCKAWSESVFGIKGTEGIAGFVGGFGGAKGSPATVFPTSMSEEGIVSIEM 165          
BLAST of EWM29953.1 vs. NCBI_GenBank
Match: gi|551662169|ref|XP_005833850.1| (hypothetical protein GUITHDRAFT_86526 [Guillardia theta CCMP2712] >gi|428177993|gb|EKX46870.1| hypothetical protein GUITHDRAFT_86526 [Guillardia theta CCMP2712])

HSP 1 Score: 135.576 bits (340), Expect = 1.845e-37
Identity = 69/132 (52.27%), Postives = 86/132 (65.15%), Query Frame = 0
Query:   33 RLPSLAATVPVGSVTELPPGERKVVDTEAGAVIVTNVGGSLYAVLAKCPHLGLPMKTGVIAIEGGEPTITCKFHNSKFALTDGKCKAWSESVFGIKGTEGIAGFVGGFGGAKGSPATVFPTSMSEEGIVSIE 164
            R P +A    VG+V E+PPGERK+       V+V N  G++YA+  KCPHLGLPMKTG I+ +G  P I CKFH SKF L DGKC  WS  V GI GT+ + GF+G  GGAK SPATVF   +  EG + ++
Sbjct:   37 RGPRMAGE-KVGNVNEIPPGERKITKVGDQDVMVVNHKGTVYALSPKCPHLGLPMKTGEISDDG--PCIKCKFHGSKFKLDDGKCVEWSTGVLGIPGTQALGGFIGNVGGAKNSPATVFAVEVDAEGGIIVD 165          
BLAST of EWM29953.1 vs. NCBI_GenBank
Match: gi|57335947|emb|CAH25375.1| (putative ferredoxin component, partial [Guillardia theta])

HSP 1 Score: 135.191 bits (339), Expect = 1.944e-37
Identity = 69/132 (52.27%), Postives = 86/132 (65.15%), Query Frame = 0
Query:   33 RLPSLAATVPVGSVTELPPGERKVVDTEAGAVIVTNVGGSLYAVLAKCPHLGLPMKTGVIAIEGGEPTITCKFHNSKFALTDGKCKAWSESVFGIKGTEGIAGFVGGFGGAKGSPATVFPTSMSEEGIVSIE 164
            R P +A    VG+V E+PPGERK+       V+V N  G++YA+  KCPHLGLPMKTG I+ +G  P I CKFH SKF L DGKC  WS  V GI GT+ + GF+G  GGAK SPATVF   +  EG + ++
Sbjct:   28 RGPRMAGE-KVGNVNEIPPGERKITKVGDQDVMVVNHKGTVYALSPKCPHLGLPMKTGEISDDG--PCIKCKFHGSKFKLDDGKCVEWSTGVLGIPGTQALGGFIGNVGGAKNSPATVFAVEVDAEGGIIVD 156          
BLAST of EWM29953.1 vs. NCBI_GenBank
Match: gi|1129204627|gb|OLQ07073.1| (hypothetical protein AK812_SmicGene9552 [Symbiodinium microadriaticum])

HSP 1 Score: 97.4413 bits (241), Expect = 3.179e-22
Identity = 58/155 (37.42%), Postives = 80/155 (51.61%), Query Frame = 0
Query:   11 IAALTLSEAFLGLKSPGHLPFRRLPSLAATVPVGSVTELPP--GERKVVDTEAGAVIVTNVGGSLYAVLAKCPHLGLPMKTGVIAIEGGEPTITCKFHNSKFALTDGKCKAWSESVFGIKGTEGIAGFVGGFGGAKGSPATVFPTSMSEEGIVSI 163
            IA +T S  F G +SP   P   L ++ A V      + PP  G+R VVD   G ++V  + G  YAV AKCPHL LPMK G I      P +TC FHNS+F + DG C  W     G +  + IAG +   GG K +    +    +++G +S+
Sbjct:   55 IALVTQSLDFAGFRSPARSPRTSLHAVCAQV------KEPPAEGDRVVVDGSDGPIVVAKIDGKYYAVDAKCPHLNLPMKKGKIENGPDGPRLTCNFHNSQFNMKDGLCTRWVTGALGFE-NDFIAGVMSNVGGEKKN-LQAYEVVEADDGSLSV 201          
BLAST of EWM29953.1 vs. NCBI_GenBank
Match: gi|223995483|ref|XP_002287415.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976531|gb|EED94858.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 99.3673 bits (246), Expect = 2.069e-21
Identity = 51/114 (44.74%), Postives = 68/114 (59.65%), Query Frame = 0
Query:   38 AATVPVGSVTELPPGERKVVDTEAGAVIVTNVGGSLYAVLAKCPHLGLPMKTGVIAIEGGEPTITCKFHNSKFALTDGKCKAWSESVFGIKGTEGIAGFVGGFGGAKGSPATVF 151
            A T+   SV E   G+R+++D + G ++VT V GS YAV A CPHLGLPMK G ++ +GG PT+TC FHNS F L  GKC  W     G++    I+G +G  GG +      F
Sbjct:  340 ATTLSCPSVDE---GQREILDGDNGPILVTKVAGSYYAVDATCPHLGLPMKKGKVSNDGGTPTLTCSFHNSCFELGTGKCTKWVSGALGVENG-FISGIMGKVGGKQQDVKAYF 449          
BLAST of EWM29953.1 vs. NCBI_GenBank
Match: gi|922854073|gb|KOO22639.1| (ferrochelatase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 98.2117 bits (243), Expect = 7.948e-21
Identity = 52/118 (44.07%), Postives = 72/118 (61.02%), Query Frame = 0
Query:   49 LPP--GERKVVDTEAGAVIVTNVGGSLYAVLAKCPHLGLPMKTGVIAIEGGEPTITCKFHNSKFALTDGKCKAWSESVFGIKGTEGIAGFVGGFGGAKGSPATVFPTSMSEEGIVSIE 164
            +PP   +R VVD   G ++VT V GS YAV A CPHLGLPMK G +A      T+TC FHNS +A+ DG CK W     GI+  E  AG +G  GG K S  + +  +++++G +++E
Sbjct:   47 VPPADNDRTVVDGPNGPILVTKVKGSYYAVDATCPHLGLPMKRGKVADGADGVTLTCSFHNSCWAMKDGSCKKWVTGALGIE-NEAAAGVMGKLGGQKRSIKS-YKVAVNQDGSLTLE 162          
BLAST of EWM29953.1 vs. NCBI_GenBank
Match: gi|551651649|ref|XP_005828605.1| (hypothetical protein GUITHDRAFT_153789 [Guillardia theta CCMP2712] >gi|428172718|gb|EKX41625.1| hypothetical protein GUITHDRAFT_153789 [Guillardia theta CCMP2712])

HSP 1 Score: 87.8113 bits (216), Expect = 2.017e-19
Identity = 51/102 (50.00%), Postives = 66/102 (64.71%), Query Frame = 0
Query:   64 VIVTNVGGSLYAVLAKCPHLGLPMKTGVIAIEGGEPTITCKFHNSKFALTDGKCKAWSESVFGIKGTEGIAGFVGGFGGAKGSPATVFPTSMSEEGIVSIEM 165
            V++ N   ++YA+  KCPHLGL +K+G I  +G  P ITCKFH SKF L  G+C AWS+S  GI GT  I G VG  GG K SPATV+   +  EG V +++
Sbjct:    9 VLLVNHENTIYALNPKCPHLGLSLKSGKITDDGQGPVITCKFHQSKFNLKTGECAAWSQSFLGIPGTGIIGGVVGNMGGPKHSPATVYSVEVDGEGSVMVDI 110          
BLAST of EWM29953.1 vs. NCBI_GenBank
Match: gi|551663263|ref|XP_005834396.1| (hypothetical protein GUITHDRAFT_162719, partial [Guillardia theta CCMP2712] >gi|428178541|gb|EKX47416.1| hypothetical protein GUITHDRAFT_162719, partial [Guillardia theta CCMP2712])

HSP 1 Score: 87.8113 bits (216), Expect = 2.729e-18
Identity = 52/131 (39.69%), Postives = 71/131 (54.20%), Query Frame = 0
Query:   48 ELPPGERKVVDTEAGAVIVTNVGGSLYAVLAKCPHLGLPMKTGVIAIEGGEP--TITCKFHNSKFALTD-GKCKAWSESVFGIKGTEGIAGFVGGF----------GGAKGSPATVFPTSMSEEGIVSIEM 165
            ++  G+ KVV      ++VT   G L+A   KCPHLGL +K G I          + C FH SKF+L + GKCK WSESVFGIKGTE I   +G F           G K +PA V+   + E+G + +++
Sbjct:   64 DVAEGQSKVVTARNIKLVVTKKEGKLFAFNNKCPHLGLSLKRGQITGSDDRHGICVVCPFHKSKFSLEEEGKCKVWSESVFGIKGTESIGNKIGQFVAPMAKSVNPTGEKAAPAAVYGVKV-EDGEILVDL 193          
BLAST of EWM29953.1 vs. NCBI_GenBank
Match: gi|397647658|gb|EJK77799.1| (hypothetical protein THAOC_00345 [Thalassiosira oceanica])

HSP 1 Score: 87.8113 bits (216), Expect = 4.218e-17
Identity = 40/87 (45.98%), Postives = 51/87 (58.62%), Query Frame = 0
Query:   34 LPSLAATVPVGSVTELPPGERKVVDTEAGAVIVTNVGGSLYAVLAKCPHLGLPMKTGVIAIEGGEPTITCKFHNSKFALTDGKCKAW 120
            L S +A     S   +  GER++V    G ++VT V GS YAV A CPHL LPMK G I +  G+P +TC FHNS F +  G+C  W
Sbjct:  733 LSSRSAGSTSLSCQPMAEGEREIVKGPNGPILVTKVAGSYYAVDATCPHLNLPMKKGKITVNNGQPALTCNFHNSCFEMKTGRCTQW 819          
BLAST of EWM29953.1 vs. NCBI_GenBank
Match: gi|1210102754|dbj|BAY21884.1| (Rieske (2Fe-2S) region [Calothrix sp. NIES-2100])

HSP 1 Score: 79.337 bits (194), Expect = 4.249e-16
Identity = 42/114 (36.84%), Postives = 59/114 (51.75%), Query Frame = 0
Query:   47 TELPPGERKVVDTEAGAVIVTNVGGSLYAVLAKCPHLGLPMKTGVIAIEGGEPTITCKFHNSKFALTDGKCKAWSESVFGIKGTEGIAGFVGGFGGAKGSPATVFPTSMSEEGI 160
             ELPP +RKVV  E  ++++ N    +YA+   CPH+ + ++ G I  EG   TI C FH S F ++ GKC AW      I    G++  +G F   K     VFPT + E  I
Sbjct:   10 NELPPNQRKVVKVENRSILLVNQNNQIYALENSCPHMKVSLEKGKITDEG---TIVCPFHRSAFEMSTGKCTAW------ITFPPGVSKVMGMFSKEKD--IAVFPTRVEEGNI 112          
The following BLAST results are available for this feature:
BLAST of EWM29953.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112541|gb|EWM29953.1|1.134e-112100.00rieske (2fe-2s) domain protein [Nannochloropsis ga... [more]
gi|551662169|ref|XP_005833850.1|1.845e-3752.27hypothetical protein GUITHDRAFT_86526 [Guillardia ... [more]
gi|57335947|emb|CAH25375.1|1.944e-3752.27putative ferredoxin component, partial [Guillardia... [more]
gi|1129204627|gb|OLQ07073.1|3.179e-2237.42hypothetical protein AK812_SmicGene9552 [Symbiodin... [more]
gi|223995483|ref|XP_002287415.1|2.069e-2144.74predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|922854073|gb|KOO22639.1|7.948e-2144.07ferrochelatase [Chrysochromulina sp. CCMP291][more]
gi|551651649|ref|XP_005828605.1|2.017e-1950.00hypothetical protein GUITHDRAFT_153789 [Guillardia... [more]
gi|551663263|ref|XP_005834396.1|2.729e-1839.69hypothetical protein GUITHDRAFT_162719, partial [G... [more]
gi|397647658|gb|EJK77799.1|4.218e-1745.98hypothetical protein THAOC_00345 [Thalassiosira oc... [more]
gi|1210102754|dbj|BAY21884.1|4.249e-1636.84Rieske (2Fe-2S) region [Calothrix sp. NIES-2100][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna720rna720Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications