EWM23474.1, cds7199 (CDS) Nannochloropsis gaditana

Overview
NameEWM23474.1
Unique Namecds7199
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:28999..29511 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23474.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101028g3.92.mrna
GbkeyCDS
End range.
End range29511
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:28999..29511 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM23474.1 vs. NCBI_GenBank
Match: gi|585104541|gb|EWM23474.1| (hypothetical protein Naga_101028g3, partial [Nannochloropsis gaditana])

HSP 1 Score: 340.502 bits (872), Expect = 2.302e-118
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0 
Query:    1 GXGADLGGRDRLVLLKPEGGGARGGDEKKKESKGREKSRVDKSQHPFISASFADVRSRRARHSRGDPLTAYPAVILALVLVFHFSIPFPTVIDLKEMGFDGQEPSILKEARETVQREEPELWDSIFREDPIARKYMEAPETVLKDVIDLTSEFETNLKGKTTLNFGTASV 170
            GXGADLGGRDRLVLLKPEGGGARGGDEKKKESKGREKSRVDKSQHPFISASFADVRSRRARHSRGDPLTAYPAVILALVLVFHFSIPFPTVIDLKEMGFDGQEPSILKEARETVQREEPELWDSIFREDPIARKYMEAPETVLKDVIDLTSEFETNLKGKTTLNFGTASV
Sbjct:    1 GXGADLGGRDRLVLLKPEGGGARGGDEKKKESKGREKSRVDKSQHPFISASFADVRSRRARHSRGDPLTAYPAVILALVLVFHFSIPFPTVIDLKEMGFDGQEPSILKEARETVQREEPELWDSIFREDPIARKYMEAPETVLKDVIDLTSEFETNLKGKTTLNFGTASV 170
[Close]
BLAST of EWM23474.1 vs. NCBI_GenBank
Match: gi|553187652|ref|XP_005854650.1| (hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526] >gi|422294407|gb|EKU21707.1| hypothetical protein NGA_0195700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 152.91 bits (385), Expect = 7.237e-44
Identity = 74/80 (92.50%), Postives = 77/80 (96.25%), Query Frame = 0 
Query:   91 VIDLKEMGFDGQEPSILKEARETVQREEPELWDSIFREDPIARKYMEAPETVLKDVIDLTSEFETNLKGKTTLNFGTASV 170
            +IDL EMGFDGQEPSILKEARETVQREEPELWDSIF EDPIARKYMEAPETVLKDV+DLTSE ETNLKGKTTL+FGTASV
Sbjct:  123 LIDLNEMGFDGQEPSILKEARETVQREEPELWDSIFSEDPIARKYMEAPETVLKDVMDLTSECETNLKGKTTLDFGTASV 202
The following BLAST results are available for this feature:
BLAST of EWM23474.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585104541|gb|EWM23474.1|2.302e-118100.00hypothetical protein Naga_101028g3, partial [Nanno... [more]
gi|553187652|ref|XP_005854650.1|7.237e-4492.50hypothetical protein NGA_0195700 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7216rna7216Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications