EWM23492.1, cds7183 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM23492.1
Unique Name	cds7183
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002470.1:696159..696209 -
Alignment location	CM002470.1:695885..696037 -
Alignment location	CM002470.1:695437..695754 -
Alignment location	CM002470.1:695196..695246 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM23492.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100198g7.5734.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:696159..696209 -
CM002470.1	supercontig	CM002470.1:695885..696037 -
CM002470.1	supercontig	CM002470.1:695437..695754 -
CM002470.1	supercontig	CM002470.1:695196..695246 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM23492.1 vs. NCBI_GenBank
Match: gi|553185345|ref|XP_005854238.1| (hypothetical protein NGA_0023802 [Nannochloropsis gaditana CCMP526] >gi|422294818|gb|EKU22118.1| hypothetical protein NGA_0023802 [Nannochloropsis gaditana CCMP526] >gi|585104562|gb|EWM23492.1| hypothetical protein Naga_100198g7 [Nannochloropsis gaditana])

HSP 1 Score: 395.586 bits (1015), Expect = 1.557e-139
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0

Query:    1 MLHFFSLFVILALTVPQGLAQTLANNGSMTLLRDLKVNKRRVRCGRNLAVIGRVRLNSFGDADSLYCALRNMNYDSAQFDLKDRVTRFTHINTRKFVMMFGDETPSDGTKKYWWSWSRDGRLFSEGLKYSLRVNLILRNATATPVTWRFYCETKKNNFTSHYFWDKTGADVNKQVRVAAPCEYTSKKDKL 190
            MLHFFSLFVILALTVPQGLAQTLANNGSMTLLRDLKVNKRRVRCGRNLAVIGRVRLNSFGDADSLYCALRNMNYDSAQFDLKDRVTRFTHINTRKFVMMFGDETPSDGTKKYWWSWSRDGRLFSEGLKYSLRVNLILRNATATPVTWRFYCETKKNNFTSHYFWDKTGADVNKQVRVAAPCEYTSKKDKL
Sbjct:    1 MLHFFSLFVILALTVPQGLAQTLANNGSMTLLRDLKVNKRRVRCGRNLAVIGRVRLNSFGDADSLYCALRNMNYDSAQFDLKDRVTRFTHINTRKFVMMFGDETPSDGTKKYWWSWSRDGRLFSEGLKYSLRVNLILRNATATPVTWRFYCETKKNNFTSHYFWDKTGADVNKQVRVAAPCEYTSKKDKL 190

The following BLAST results are available for this feature:

BLAST of EWM23492.1 vs. NCBI_GenBank

BLAST of EWM23492.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|553185345\|ref\|XP_005854238.1\|	1.557e-139	100.00	hypothetical protein NGA_0023802 [Nannochloropsis ...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna7200	rna7200	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications