EWM23498.1, cds7174 (CDS) Nannochloropsis gaditana

Overview
NameEWM23498.1
Unique Namecds7174
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:674203..675108 +
Alignment locationCM002470.1:676027..676170 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23498.1
ProductCAP domain protein
Orig transcript idgnl|cribi|Naga_100414g4.7733.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:674203..675108 +
CM002470.1supercontigCM002470.1:676027..676170 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR014044CAP_domain
Homology
BLAST of EWM23498.1 vs. NCBI_GenBank
Match: gi|585104569|gb|EWM23498.1| (CAP domain protein [Nannochloropsis gaditana])

HSP 1 Score: 736.102 bits (1899), Expect = 0.000e+0
Identity = 349/349 (100.00%), Postives = 349/349 (100.00%), Query Frame = 0
Query:    1 MLREGSGANSPKGYSLVEDRPRCYFTLGKDYCPAATNNKWTDYYMSYIERTSQVLTNAARMDPQDFKRIYNGNDGGTYKCSTRTLPPLRYSANAQQAALKESQMLADPNCPFQHDTCNKYCRLYGGKCNWDARISKYESNWRGMGENIAMTQRNLKEEPSAPVLQWLASGPHCSNIFSGDFSHLGTGAYDRYWTQDFLKLSGSTNNPLHDGTHYLHPAKTGGKLRFMASFKSSSAPNKMEVVVNGQAKSMSLHLGSSAQGLYAYEQSQPGSSAGCISYYFVVTTSSGSTYNMPETGAFQTATRDHGSGKEKGCSSRWTPPTRHATRREMATDHKGGAPMTEDADLALAK 349
            MLREGSGANSPKGYSLVEDRPRCYFTLGKDYCPAATNNKWTDYYMSYIERTSQVLTNAARMDPQDFKRIYNGNDGGTYKCSTRTLPPLRYSANAQQAALKESQMLADPNCPFQHDTCNKYCRLYGGKCNWDARISKYESNWRGMGENIAMTQRNLKEEPSAPVLQWLASGPHCSNIFSGDFSHLGTGAYDRYWTQDFLKLSGSTNNPLHDGTHYLHPAKTGGKLRFMASFKSSSAPNKMEVVVNGQAKSMSLHLGSSAQGLYAYEQSQPGSSAGCISYYFVVTTSSGSTYNMPETGAFQTATRDHGSGKEKGCSSRWTPPTRHATRREMATDHKGGAPMTEDADLALAK
Sbjct:    1 MLREGSGANSPKGYSLVEDRPRCYFTLGKDYCPAATNNKWTDYYMSYIERTSQVLTNAARMDPQDFKRIYNGNDGGTYKCSTRTLPPLRYSANAQQAALKESQMLADPNCPFQHDTCNKYCRLYGGKCNWDARISKYESNWRGMGENIAMTQRNLKEEPSAPVLQWLASGPHCSNIFSGDFSHLGTGAYDRYWTQDFLKLSGSTNNPLHDGTHYLHPAKTGGKLRFMASFKSSSAPNKMEVVVNGQAKSMSLHLGSSAQGLYAYEQSQPGSSAGCISYYFVVTTSSGSTYNMPETGAFQTATRDHGSGKEKGCSSRWTPPTRHATRREMATDHKGGAPMTEDADLALAK 349          
BLAST of EWM23498.1 vs. NCBI_GenBank
Match: gi|528892116|gb|EPZ32534.1| (hypothetical protein O9G_002311 [Rozella allomycis CSF55])

HSP 1 Score: 98.5969 bits (244), Expect = 5.283e-20
Identity = 83/273 (30.40%), Postives = 126/273 (46.15%), Query Frame = 0
Query:   42 DYYMSYIERTSQVLTNAARMDPQDFKRIYNGNDGGTYKCSTRTLPPLRYSAN---AQQAALKESQMLADPNCPFQHDTCNKYCRLYGGKCNWDARISKYESNWRGMGENIAMTQRNLKEEPSAPVLQ---WLASGP-HCSNIFSGDFSHLGTGAYDRYWTQDFLKLSGST-NNPLHDGTHYLHPAKTG---GKLRFMASFKSSSAPNKMEVVVNGQAKSMSLHLGSSAQGLYAYEQSQPGSSAG---CISYYFVVTTSSGSTYNMPETGAFQT 300
            D   +Y+ERT   LTNA R+DP+ +  + N ++ GT  C     P      N    Q      + M   P C +QHDTC   C  +G  C+W +RI  +      + ENI          P +PV     W+ S   HC N+ +   + LG    +    QDF   S +  N+ L  G+H + P  T      L F+ ++ + + P+K+ + +  QA+ +SL  GSS +G+Y Y +   G+  G   C +Y+F V  + G  Y  PE G F T
Sbjct:   25 DIQTTYLERTIHTLTNAVRIDPKSY--LNNFSNAGTGNCLYNGSPARHLFWNMALTQSGRFHCTSMQRSPGC-WQHDTCPSECYKFG-SCSWSSRIWSFYKKPAWIAENI-------YAGPISPVEIMDGWIRSKMGHCENLLAASATELGVANSNNCVIQDFGGASNTDYNSALVIGSH-VSPKLTSLNTNNLLFLVTYVNDAPPSKIWIQIGQQARGLSLLYGSSNRGVY-YFKLNDGNLLGNQSCQNYFFRVIDTKGRNYRFPEKGRFLT 284          
BLAST of EWM23498.1 vs. NCBI_GenBank
Match: gi|1088323852|gb|OHB74681.1| (hypothetical protein A2Z25_09415 [Planctomycetes bacterium RBG_16_55_9])

HSP 1 Score: 100.523 bits (249), Expect = 1.076e-19
Identity = 82/286 (28.67%), Postives = 129/286 (45.10%), Query Frame = 0
Query:   41 TDYYMSYIERTSQVLTNAARMDPQDFKRIYNGN---DGGTYKCSTRTLPPLRYSANAQQAALKESQMLADPNCPFQHDTCNKYCRLYGGKCNWDARISKYESNWRGMGENIAMTQRNLKEEPSAPVLQWL--------------ASGPHCSNIFSGDFSHLGTG-------AYDRYWTQDFLKLSGSTNNPLHDGTHYLHPAKTGGKLRFMASFKSSS--APNKMEVVVNGQAKSMSLHLGSSAQGLYAYEQSQPGSSAGCISYYFVVTTSSGSTYNMPETGAFQT 300
             D Y +  ER + V TNA RM PQ ++  Y  +   D  +   +   + P+ Y     QAA   ++ +A+ +C FQHD C+           W+ RI  +    R + ENIA    + K    A V  WL              A+G H +++ +  +  +GTG       A+  +W +DF     ++  P+  G H        GK  F+ +++  S  AP  ++V+V+G    MSL LG+ A G Y  + S+ G+   C  YYF+  T+SG  +  P  G F T
Sbjct:  260 VDGYPNLFERRTLVYTNAMRMAPQQYRDKYMADFQPDASSILQTYSPVEPVYYQPLLNQAARFHAEDMAENDC-FQHDDCDG--------SAWNDRIRGFYPEARMIAENIAYGYPSAK----AVVDAWLCDETGGRCAADGTQAAG-HRTSMVNDGYRQIGTGWAEDEGGAWRSFWVEDFASNEPASRPPIVAGCHDFL---VSGKTSFLVNYRDVSDRAPAAVQVIVSGTTYDMSLDLGTQAAGTYRVDVSRAGN---CREYYFLALTASGQLWRYPGPGVFLT 525          
BLAST of EWM23498.1 vs. NCBI_GenBank
Match: gi|290976850|ref|XP_002671152.1| (predicted protein [Naegleria gruberi] >gi|284084718|gb|EFC38408.1| predicted protein [Naegleria gruberi])

HSP 1 Score: 90.5077 bits (223), Expect = 4.049e-16
Identity = 80/299 (26.76%), Postives = 121/299 (40.47%), Query Frame = 0
Query:   44 YMSYIERTSQVLTNAARMDPQDFKRIYNGNDGGTYKCSTRTLPPLRYSANAQQAALKESQMLADPNCPFQHDTCNKYCRLYGGKCNWDARISKYESNWRGMGENIAMTQRNLKEEPSAPVLQWLASGPHCSNIFSGDFSHLGTGAYDR--------YWTQDFLKLSGSTNNPLHDGTHYLHPAKTGGKLRFMASFKSSS------APNKMEVVVNGQAKSMSLHLGSS------AQGLYAYEQSQPGSSAGCISYYFVVTTSSGSTYNMPETGAFQTATRDHGSGKEKGCSSRWTPPTR 322
            Y  Y+E+T  VLTN ARM P  FK  +           T  LPPL    N  ++    S+ +A   C FQH++C+       G   +  R++ + +    M ENIA  Q      P +  + W+ S  H +NI    ++ LG G Y +        YWTQ+F   S   +NP+   TH      T   + F+A++   +      AP  + + +N     MS+   S         G + Y  ++  S   C  YY     S+G  Y  P  G   T       G+   C+S +    R
Sbjct:   98 YSRYVEKTVHVLTNWARMSPSGFKTRFLNLFQAEKSLETTGLPPLFEHFNLVESGRFHSKDMATVPC-FQHNSCD-------GTLTF-TRVATFYTKPAAMAENIAAGQ----TSPLSVTMAWINSDGHRANILGSSYTLLGVGHYPKVAATGFSDYWTQNFASGSHGISNPIVAATHITFATDT---VTFLANYYHKADLGKGVAPLNVSIFINDVEYPMSIPTSSMYTDSSLNAGTFEYNTTRLSSGTACRKYYIKAVDSNGYKYYYPSVGYLLT------QGENSACTSNYLRAVR 374          
BLAST of EWM23498.1 vs. NCBI_GenBank
Match: gi|290982482|ref|XP_002673959.1| (predicted protein [Naegleria gruberi] >gi|284087546|gb|EFC41215.1| predicted protein [Naegleria gruberi])

HSP 1 Score: 87.4261 bits (215), Expect = 1.742e-15
Identity = 81/277 (29.24%), Postives = 120/277 (43.32%), Query Frame = 0
Query:   44 YMSYIERTSQVLTNAARMDPQDFKRIYNGNDGGTYKCSTRTLPPLRYSANAQQAALKESQMLADPNCPFQHDTCNKYCRLYGGKCNWDARISKYESNWRGMGENIAMTQRNLKEEPSAPVLQWLASGPHCSNIFSGDFSHLGTGA--------YDRYWTQDFLKLSGSTNNPLHDGTHYLHPAKTGGKLRFMASF------KSSSAPNKMEVVVNGQAKSMSLHLGS-----SAQGLYAYE-QSQPGSSAGCISYYFVVTTSSGSTYNMPETGAFQT 300
            Y  Y E+T  VLTN ARM P  FK  +          +   L PL    N  ++A   S  ++  NC F H +CN       G+  +    + Y  N  GM ENIA  Q      P    + W+ S  H +NI  G FS LG G         Y  YWTQ+F+  S   +NP+   +H +    T G+L F+A++       +S     +++ ++ +  +M+L + +     SA G+  +E  +   S+A C  YY     S G  Y  P  G   T
Sbjct:   91 YSLYFEKTVHVLTNWARMSPVGFKSRFGSLFKSGVSLAASGLVPLFEHFNLVESARYHSYDMSFNNC-FSHASCN-------GEDTFVRIATFYNRNNIGMAENIAAGQ----TTPLDVTMTWINSDLHRANIL-GSFSLLGVGYFPKLNNADYSDYWTQNFVSGSHGISNPIVSVSHLI---LTSGQLTFLANYYHKYDITNSKQLKSIQLFIDDKGYTMTLPVTNQFDDKSANGMGTFEFTTSVNSTATCRKYYVKAIDSFGYAYYYPAFGYLLT 351          
BLAST of EWM23498.1 vs. NCBI_GenBank
Match: gi|470505421|ref|XP_004348569.1| (mucin, putative, partial [Acanthamoeba castellanii str. Neff] >gi|440801086|gb|ELR22111.1| mucin, putative, partial [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 86.6557 bits (213), Expect = 2.300e-15
Identity = 93/310 (30.00%), Postives = 125/310 (40.32%), Query Frame = 0
Query:   46 SYIERTSQVLTNAARMDPQDFKRIYNGNDGGTYKCSTRTLP---PLRYSANAQQAALKESQMLADPNCPFQHDTCNKYCRLYGGKCNWDARISKYESNWRGMGENIAMTQRNLKEEP----SAPVLQW----------------LASGPHCSNI----FSGDFSHLG--------TGAYDRYWTQDFLKLSGST-NNPLHDGTHYLHPAKTGGKLRFMASF-KSSSAPNKMEVVVNGQAKSMSLHLGSSAQGLYAYEQSQPGSSAGCISYYFVVTTSSGSTYNMPETGAFQTATRDHGSGKEKGCSSRWT 318
            SY ERT   L NAAR+ P  F   Y    G         LP   PL +     +AA   SQ LA+     Q ++C+           W  R+    S    +GE +   Q     +P    S  V  W                 +SG  C+ +     S  +S  G        TG Y  YWT D+   +  T  NP+  G+H +      G +RF A++  +  AP   +V V G    ++L  G+  QG Y Y  S  GS  GC SYYF  T++SG  Y +PETG F T         E  CS+ WT
Sbjct:   37 SYQERTVGALINAARVGPSGFAAAYMATAGYPASGIADGLPAQLPLYFDPKLSEAASGHSQDLANNCHAVQFNSCDG--------TAWYTRVRNIYSCTGLVGEGL---QYAYSGDPLTAVSDGVCGWNQDASGNYVCCPASGKTSSGSTCNGLRNMYLSSSYSRFGVGYGADAQTGYY--YWTTDYGACNTETYANPIASGSHLIQS----GNVRFFAAYYDAVGAPQSAKVFVGGSPLDLALDAGTGNQGNY-YAVSAAGS--GCRSYYFQFTSASGGVYRLPETGYFNTF-------GEGSCSTDWT 319          
BLAST of EWM23498.1 vs. NCBI_GenBank
Match: gi|330799485|ref|XP_003287775.1| (hypothetical protein DICPUDRAFT_32986 [Dictyostelium purpureum] >gi|325082230|gb|EGC35719.1| hypothetical protein DICPUDRAFT_32986 [Dictyostelium purpureum])

HSP 1 Score: 86.6557 bits (213), Expect = 2.440e-15
Identity = 84/289 (29.07%), Postives = 125/289 (43.25%), Query Frame = 0
Query:   46 SYIERTSQVLTNAARMDPQDFKRIYNGNDGGTYKCSTRT-----LPPLRYSANAQQAALKESQMLADPNCP----FQHDTCNKYCRLYGGKCNWDARISKYESNWRGMGENIA---------MTQRNL---KEEPSAPVLQWLASGPHCSNIFSGD--FSHLGTGAYDR-----YWTQDFL--KLSGSTNNPLHDGTHYLHPAKTGGKLRFMASF---KSSSAPNKMEVVVNGQAKSMSLHLGSSAQGLYAYEQSQPGSSAGCISYYFVVTTSSGSTYNMPETGAFQTA 301
            +Y+ER S  + N  RM P+++KR +     G     T +     + PL Y  +  + A   S  +A         FQH+ CN    +     NWD+ I K        GENIA          T   L   K     P  Q +A   H   I S D  F  +G G Y+      YWTQDFL  +   +  +P++ G H  +PA T G+  F+ +F   K +    KM +V +    ++ L  G+S  G+Y+++ +   +   C  YYF  TT+    +  PETG  QT 
Sbjct:   30 NYLERESHNMLNVVRMFPREYKRDFMVGFQGIDDILTESRYPSGVNPLFYYNSLNRLAKAHSFDMATKETSTSKCFQHNDCNG-TTVNDRFKNWDSCIEK-----GAYGENIAWAKPPQTGIATNNQLICEKFNAPCPSDQVVAEIGHRDIIMSFDYPFYSVGVGNYESEFNSLYWTQDFLGTQCVSAPQSPIYSGYHTYYPA-TSGETLFLVTFYSPKGALVAKKMNIVFSNTKINIPLRYGNSTFGIYSHKAT---TFTDCQQYYFETTTTDNKVFRYPETGYLQTT 308          
BLAST of EWM23498.1 vs. NCBI_GenBank
Match: gi|1160555927|ref|XP_020435860.1| (hypothetical protein PPL_02810 [Polysphondylium pallidum PN500] >gi|281209575|gb|EFA83743.1| hypothetical protein PPL_02810 [Polysphondylium pallidum PN500])

HSP 1 Score: 81.2629 bits (199), Expect = 9.707e-14
Identity = 67/244 (27.46%), Postives = 113/244 (46.31%), Query Frame = 0
Query:   85 LPPLRYSANAQQAALKESQMLADPNCPFQHDTCNKYCRLYGGKCNWDARISKYESNWRGMGENIAMTQRNLKEEPSAPVLQWLASGPHC----------SNIFSGDFSHLG-------TGAYDRYWTQDFLKLSGSTN---NPLHDGTHYLHPAKTGGKLRFMASFKSSSAPNKMEVVVNGQAKS------MSLHLGSSAQGLYAYEQSQPGSSAGCISYYFVVTTSSGSTYNMPETGAFQTAT 302
            + P+ Y     + +   S  +A   C FQHD+CN    +     N D +        R   ENIA    +  +  +  + +   +G  C            + S  ++ +G       T  +  YWTQDF +L+G      +P+  G+H         KLR++A++ S++AP  +++ +N +  S      +SLHLGS+++G+Y YE   P +   C SY+F  TT+ G+TY  P +G  +T T
Sbjct:   67 VDPVYYDDKMNKLSKLHSDDMAMNGC-FQHDSCNGTGIMQRVFANLDPKC------LRAFAENIAAGYSSGLDIINYWICEKTLTGKECYPDGTKDGHRVALMSSKYNTVGTSRVVNDTSRFKTYWTQDF-ELNGCNKVPPSPIPSGSHTF----VNNKLRYLAAWSSTAAPTSVKIHLNQRLLSDEKQYQLSLHLGSASKGIYMYE---PDTYNECQSYFFTFTTADGTTYRYPTSGFLKTVT 295          
BLAST of EWM23498.1 vs. NCBI_GenBank
Match: gi|66811472|ref|XP_639916.1| (WSC domain-containing protein [Dictyostelium discoideum AX4] >gi|60466867|gb|EAL64911.1| WSC domain-containing protein [Dictyostelium discoideum AX4])

HSP 1 Score: 82.0333 bits (201), Expect = 2.139e-13
Identity = 66/244 (27.05%), Postives = 110/244 (45.08%), Query Frame = 0
Query:   46 SYIERTSQVLTNAARMDPQDFKRIYN--GNDGGTYKCSTRTLPPLRYSANAQQAALKESQMLADPNCPFQHDTCNKYCRLYGGKCNWDARISKYESNWRGMGENIA-------------MTQRNLKEEPSAPVLQWLASGP--HCSNIFSGDFSHLGTG-------AYDRYWTQDF--LKLSGSTNNPLHDGTHYLHPAKTGGKLRFMASFKSSSAPNKMEVVVNGQAKSMSLHLGSSAQGLYA 263
            ++ ER++ VL N+ R+ P++++  Y   GN          ++PPL +  +   +AL  ++ ++  NC F H++C+          + D RI++Y       GENIA             +      +  S P     ASG   H +NI + +F  +G G        Y  YWTQDF        TN P+H G+H         KL FM  +     P    VV++G+   ++L +GS ++G+Y+
Sbjct:   31 NWFERSNHVLVNSVRIAPKEYQNRYTQFGNQDVLSPSIYPSVPPLFFEFSLGASALAHARDMSINNC-FSHESCDG--------TDSDTRINEYYHCDEIHGENIAAGYDSPLITNNQWVCDDGTNDPYSNPTCAQDASGSDGHRANIMNPNFKAIGVGFSFTSDSTYHSYWTQDFGAQPCFNITNQPIHSGSHLF---LNQNKLTFMVDWYDQVEPTVAYVVISGKPNKLNLEMGSKSKGIYS 262          
BLAST of EWM23498.1 vs. NCBI_GenBank
Match: gi|297181016|gb|ADI17217.1| (uncharacterized protein with scp/pr1 domains [uncultured delta proteobacterium HF0070_10I02])

HSP 1 Score: 78.5666 bits (192), Expect = 1.275e-12
Identity = 73/273 (26.74%), Postives = 120/273 (43.96%), Query Frame = 0
Query:   41 TDYYMSYIERTSQVLTNAARMDPQDF-------KRIYNGNDGGTYKCSTRTLP--PLRYSANAQQAALKESQMLADPNCPFQHDTCNKYCRLYGGKCNWDARISKYESNWRGMGENIAMTQRNLKEEPSAPVLQWLASGPHCSNIFSGDFSHLGTGAYDRYWTQDFLKLSGSTNNPLHDGTHYLHPAKTGGKLRFMASFKSSSAPNKMEVVVNGQAKSMSLHLGSSAQGLYAYEQSQPGSSAGCISYYFVVTTSS-GSTYNMPETGAFQTATR 303
             D Y S+ ER   + TN  R+DP  F        R  + +D         ++P  PL Y  +   +    SQ + D N  F H + +          ++  R++++      +GENIA    N +   S     W+ S  H +NI +GD++ +G G    Y+TQ+F + + +T+ P+    H   P    G +   A F+    P+  + +V+G+   +SL  G + QG+Y+ E +  G    C  YYF  T      TY  PE G++   T 
Sbjct:   19 VDGYPSWAERDVHLWTNVVRVDPSAFFGPGAPDSRPCDLDD----FVGDESVPKAPLFYEYHLNDSGRFHSQDMYD-NDWFNHSSSDG--------TSFGERVARFYQESGYIGENIANGYANGE---SVVFDGWMCSAGHRANIMNGDYNEMGVGVVSLYYTQNFAEGTLATDGPIAMANHL--PEIPTGPVEIFADFQGFE-PDSFDAIVDGKPIPLSLTYGVAHQGVYSTEMTATG-ELDCHEYYFRWTKGDRRGTY--PEDGSYMFGTE 269          
The following BLAST results are available for this feature:
BLAST of EWM23498.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104569|gb|EWM23498.1|0.000e+0100.00CAP domain protein [Nannochloropsis gaditana][more]
gi|528892116|gb|EPZ32534.1|5.283e-2030.40hypothetical protein O9G_002311 [Rozella allomycis... [more]
gi|1088323852|gb|OHB74681.1|1.076e-1928.67hypothetical protein A2Z25_09415 [Planctomycetes b... [more]
gi|290976850|ref|XP_002671152.1|4.049e-1626.76predicted protein [Naegleria gruberi] >gi|28408471... [more]
gi|290982482|ref|XP_002673959.1|1.742e-1529.24predicted protein [Naegleria gruberi] >gi|28408754... [more]
gi|470505421|ref|XP_004348569.1|2.300e-1530.00mucin, putative, partial [Acanthamoeba castellanii... [more]
gi|330799485|ref|XP_003287775.1|2.440e-1529.07hypothetical protein DICPUDRAFT_32986 [Dictyosteli... [more]
gi|1160555927|ref|XP_020435860.1|9.707e-1427.46hypothetical protein PPL_02810 [Polysphondylium pa... [more]
gi|66811472|ref|XP_639916.1|2.139e-1327.05WSC domain-containing protein [Dictyostelium disco... [more]
gi|297181016|gb|ADI17217.1|1.275e-1226.74uncharacterized protein with scp/pr1 domains [uncu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7191rna7191Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications