EWM23503.1, cds7170 (CDS) Nannochloropsis gaditana

Overview
NameEWM23503.1
Unique Namecds7170
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:660308..660442 +
Alignment locationCM002470.1:660600..660633 +
Alignment locationCM002470.1:660859..660899 +
Alignment locationCM002470.1:660968..660985 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23503.1
Productbeta-lactamase
Orig transcript idgnl|cribi|Naga_102309g1.10369.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:660308..660442 +
CM002470.1supercontigCM002470.1:660600..660633 +
CM002470.1supercontigCM002470.1:660859..660899 +
CM002470.1supercontigCM002470.1:660968..660985 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR012338Beta-lactam/transpept-like
Homology
BLAST of EWM23503.1 vs. NCBI_GenBank
Match: gi|585104579|gb|EWM23503.1| (beta-lactamase [Nannochloropsis gaditana])

HSP 1 Score: 152.91 bits (385), Expect = 3.731e-47
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0
Query:    1 MCRSTSYTVMPSGRLQFIFRPRADFVSYSPPTFKSLGGGIVSTAKDFTRFGQMLLNGGTLDGVRILSPQSRPQHR 75
            MCRSTSYTVMPSGRLQFIFRPRADFVSYSPPTFKSLGGGIVSTAKDFTRFGQMLLNGGTLDGVRILSPQSRPQHR
Sbjct:    1 MCRSTSYTVMPSGRLQFIFRPRADFVSYSPPTFKSLGGGIVSTAKDFTRFGQMLLNGGTLDGVRILSPQSRPQHR 75          
BLAST of EWM23503.1 vs. NCBI_GenBank
Match: gi|737023048|ref|WP_035018427.1| (serine hydrolase [Caulobacter sp. UNC358MFTsu5.1])

HSP 1 Score: 63.1586 bits (152), Expect = 5.622e-10
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 0
Query:   30 PPTFKSLGGGIVSTAKDFTRFGQMLLNGGTLDGVRILSPQS 70
            PP   S GGG++STA DF RF QM+LNGGTLDGVRIL+P+S
Sbjct:  294 PPAAPSGGGGLLSTAGDFARFAQMILNGGTLDGVRILTPES 334          
BLAST of EWM23503.1 vs. NCBI_GenBank
Match: gi|1200435291|gb|OUV51668.1| (serine hydrolase [Alphaproteobacteria bacterium TMED110])

HSP 1 Score: 62.7734 bits (151), Expect = 8.306e-10
Identity = 27/42 (64.29%), Postives = 36/42 (85.71%), Query Frame = 0
Query:   29 SPPTFKSLGGGIVSTAKDFTRFGQMLLNGGTLDGVRILSPQS 70
            SPP+F+S G G+VSTA+D+ RF QM+LN G LDG+RILSP++
Sbjct:  317 SPPSFESGGAGLVSTARDYLRFSQMMLNKGELDGIRILSPKT 358          
BLAST of EWM23503.1 vs. NCBI_GenBank
Match: gi|499223486|ref|WP_010921026.1| (serine hydrolase [Caulobacter vibrioides] >gi|16127420|ref|NP_421984.1| hypothetical protein CC_3190 [Caulobacter crescentus CB15] >gi|13424864|gb|AAK25152.1| conserved hypothetical protein [Caulobacter crescentus CB15])

HSP 1 Score: 62.7734 bits (151), Expect = 9.035e-10
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 0
Query:    4 STSYTVMPSGRLQFIFRPRADFVSYSPPTFKSLGGGIVSTAKDFTRFGQMLLNGGTLDGVRILSPQS 70
            +  Y + PSG++     P       S P+ KS GGG+VSTA D+ RF +MLLNGG LDGVR+LSP++
Sbjct:  319 TACYALTPSGKVVLQDDPEKSRY-LSDPSVKSGGGGLVSTADDYMRFCRMLLNGGELDGVRLLSPKT 384          
BLAST of EWM23503.1 vs. NCBI_GenBank
Match: gi|919130718|ref|WP_052686350.1| (hypothetical protein [Burkholderiaceae bacterium 16] >gi|770092296|gb|KJK09615.1| beta-lactamase [Burkholderiaceae bacterium 16])

HSP 1 Score: 62.3882 bits (150), Expect = 1.089e-9
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 0
Query:   24 DFVSYSPPTFKSLGGGIVSTAKDFTRFGQMLLNGGTLDGVRILSPQS 70
            D+   +PP + S G G++STA D+ RF QMLLNGG LDGVR+LSP+S
Sbjct:  264 DYEDDNPPQWHSGGAGLLSTAGDYARFCQMLLNGGVLDGVRLLSPKS 310          
BLAST of EWM23503.1 vs. NCBI_GenBank
Match: gi|594552908|ref|WP_024265923.1| (serine hydrolase [Caulobacter vibrioides] >gi|594552361|ref|YP_002518666.2| beta-lactamase family protein [Caulobacter crescentus NA1000] >gi|584304228|gb|ACL96758.2| beta-lactamase family protein [Caulobacter crescentus NA1000])

HSP 1 Score: 62.3882 bits (150), Expect = 1.095e-9
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 0
Query:    4 STSYTVMPSGRLQFIFRPRADFVSYSPPTFKSLGGGIVSTAKDFTRFGQMLLNGGTLDGVRILSPQS 70
            +  Y + PSG++     P       S P+ KS GGG+VSTA D+ RF +MLLNGG LDGVR+LSP++
Sbjct:  237 TACYALTPSGKVVLQDDPEKSRY-LSDPSVKSGGGGLVSTADDYMRFCRMLLNGGELDGVRLLSPKT 302          
BLAST of EWM23503.1 vs. NCBI_GenBank
Match: gi|1011175032|ref|WP_062096161.1| (serine hydrolase [Caulobacter sp. CCH5-E12])

HSP 1 Score: 62.3882 bits (150), Expect = 1.128e-9
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 0
Query:    4 STSYTVMPSGRLQFIFRPRADFVSYSPPTFKSLGGGIVSTAKDFTRFGQMLLNGGTLDGVRILSPQS 70
            +  Y + PSG++     P       S P+ KS GGG+VSTA D+ RF +MLLNGG LDGVR+LSP++
Sbjct:  237 TACYALTPSGKVVLQDDPEKSRY-LSDPSVKSGGGGLVSTADDYMRFCRMLLNGGELDGVRLLSPKT 302          
BLAST of EWM23503.1 vs. NCBI_GenBank
Match: gi|295430104|gb|ADG09276.1| (beta-lactamase [Caulobacter segnis ATCC 21756])

HSP 1 Score: 62.003 bits (149), Expect = 1.772e-9
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 0
Query:    4 STSYTVMPSGRLQFIFRP-RADFVSYSPPTFKSLGGGIVSTAKDFTRFGQMLLNGGTLDGVRILSPQS 70
            +  Y + PSG++     P ++ F+S   P+ KS GGG+VSTA D+ RF +MLLNGG LDG R+LSP++
Sbjct:  266 TACYALTPSGKVVLQDDPEKSRFLS--DPSLKSGGGGLVSTADDYMRFCRMLLNGGELDGARLLSPKT 331          
BLAST of EWM23503.1 vs. NCBI_GenBank
Match: gi|753782528|ref|WP_041538171.1| (serine hydrolase [Caulobacter segnis])

HSP 1 Score: 62.003 bits (149), Expect = 1.805e-9
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 0
Query:    4 STSYTVMPSGRLQFIFRP-RADFVSYSPPTFKSLGGGIVSTAKDFTRFGQMLLNGGTLDGVRILSPQS 70
            +  Y + PSG++     P ++ F+S   P+ KS GGG+VSTA D+ RF +MLLNGG LDG R+LSP++
Sbjct:  237 TACYALTPSGKVVLQDDPEKSRFLS--DPSLKSGGGGLVSTADDYMRFCRMLLNGGELDGARLLSPKT 302          
BLAST of EWM23503.1 vs. NCBI_GenBank
Match: gi|1113123001|gb|OJT98672.1| (serine hydrolase [Alphaproteobacteria bacterium 65-7])

HSP 1 Score: 61.6178 bits (148), Expect = 2.345e-9
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 0
Query:    2 CRSTSYTVMPSGRLQFIFRPRADFVSYSPPTFKSLGGGIVSTAKDFTRFGQMLLNGGTLDGVRILSPQS 70
             R  +   +  GRL+ +F    D   +SPP  +S GGG+V TA+D+ RF +MLLN G LDG R+LSP++
Sbjct:  222 ARFAACYALKDGRLE-LFDDARDSPWFSPPKLESGGGGLVGTAQDYLRFARMLLNEGELDGARLLSPKT 289          
The following BLAST results are available for this feature:
BLAST of EWM23503.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104579|gb|EWM23503.1|3.731e-47100.00beta-lactamase [Nannochloropsis gaditana][more]
gi|737023048|ref|WP_035018427.1|5.622e-1070.73serine hydrolase [Caulobacter sp. UNC358MFTsu5.1][more]
gi|1200435291|gb|OUV51668.1|8.306e-1064.29serine hydrolase [Alphaproteobacteria bacterium TM... [more]
gi|499223486|ref|WP_010921026.1|9.035e-1049.25serine hydrolase [Caulobacter vibrioides] >gi|1612... [more]
gi|919130718|ref|WP_052686350.1|1.089e-959.57hypothetical protein [Burkholderiaceae bacterium 1... [more]
gi|594552908|ref|WP_024265923.1|1.095e-949.25serine hydrolase [Caulobacter vibrioides] >gi|5945... [more]
gi|1011175032|ref|WP_062096161.1|1.128e-949.25serine hydrolase [Caulobacter sp. CCH5-E12][more]
gi|295430104|gb|ADG09276.1|1.772e-948.53beta-lactamase [Caulobacter segnis ATCC 21756][more]
gi|753782528|ref|WP_041538171.1|1.805e-948.53serine hydrolase [Caulobacter segnis][more]
gi|1113123001|gb|OJT98672.1|2.345e-944.93serine hydrolase [Alphaproteobacteria bacterium 65... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7187rna7187Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications