EWM23513.1, cds7160 (CDS) Nannochloropsis gaditana

Overview
NameEWM23513.1
Unique Namecds7160
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:634360..634474 -
Alignment locationCM002470.1:634185..634246 -
Alignment locationCM002470.1:633932..633990 -
Alignment locationCM002470.1:633652..633682 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23513.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100352g1.221.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:634360..634474 -
CM002470.1supercontigCM002470.1:634185..634246 -
CM002470.1supercontigCM002470.1:633932..633990 -
CM002470.1supercontigCM002470.1:633652..633682 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM23513.1 vs. NCBI_GenBank
Match: gi|585104595|gb|EWM23513.1| (hypothetical protein Naga_100352g1 [Nannochloropsis gaditana])

HSP 1 Score: 176.022 bits (445), Expect = 8.115e-56
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
Query:    1 MAFLADVQKEVCDGEVPALPLRWWGLFAGILNFFFFGWGTILAGVRSDRPTTIFIGVLQFILPVVGWIWSMVWGYLLISRAEQYSSLI 88
            MAFLADVQKEVCDGEVPALPLRWWGLFAGILNFFFFGWGTILAGVRSDRPTTIFIGVLQFILPVVGWIWSMVWGYLLISRAEQYSSLI
Sbjct:    1 MAFLADVQKEVCDGEVPALPLRWWGLFAGILNFFFFGWGTILAGVRSDRPTTIFIGVLQFILPVVGWIWSMVWGYLLISRAEQYSSLI 88          
BLAST of EWM23513.1 vs. NCBI_GenBank
Match: gi|553181651|ref|XP_005853602.1| (hypothetical protein NGA_0134302 [Nannochloropsis gaditana CCMP526] >gi|553191545|ref|XP_005855396.1| hypothetical protein NGA_0134301 [Nannochloropsis gaditana CCMP526] >gi|422293659|gb|EKU20959.1| hypothetical protein NGA_0134301 [Nannochloropsis gaditana CCMP526] >gi|422295458|gb|EKU22757.1| hypothetical protein NGA_0134302 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 124.79 bits (312), Expect = 1.704e-35
Identity = 60/64 (93.75%), Postives = 61/64 (95.31%), Query Frame = 0
Query:    1 MAFLADVQKEVCDGEVPALPLRWWGLFAGILNFFFFGWGTILAGVRSDRPTTIFIGVLQFILPV 64
            MAFLADVQKEVCDGEVPALPLRWWGLFAGILNFFFFGWGTILAGVRSDRPTTIFIGVLQ   P+
Sbjct:    1 MAFLADVQKEVCDGEVPALPLRWWGLFAGILNFFFFGWGTILAGVRSDRPTTIFIGVLQIFFPL 64          
BLAST of EWM23513.1 vs. NCBI_GenBank
Match: gi|1103665148|emb|CRG95341.1| (conserved Plasmodium protein, unknown function [Plasmodium gallinaceum])

HSP 1 Score: 66.6254 bits (161), Expect = 1.178e-12
Identity = 30/80 (37.50%), Postives = 49/80 (61.25%), Query Frame = 0
Query:    4 LADVQKEVCDGEVPALPLRWWGLFAGILNFFFFGWGTILAGVRSDRPTTIFIGVLQFILPVVGWIWSMVWGYLLISRAEQ 83
            ++ +  ++ + EVP        +  G+LN FFFG G I+ G+ +     + IG+LQFI P+VGWIW+++WG L+I R  +
Sbjct:    1 MSTIINKISNLEVPENGNSSVNIILGVLNIFFFGMGMIILGIINKDIDDLIIGILQFITPIVGWIWAIIWGVLIIIRNAK 80          
BLAST of EWM23513.1 vs. NCBI_GenBank
Match: gi|675225098|emb|CDS45009.1| (conserved Plasmodium protein, unknown function [Plasmodium berghei ANKA] >gi|991454298|emb|CXI02013.1| conserved Plasmodium protein, unknown function [Plasmodium berghei] >gi|1061780913|emb|SCL91907.1| conserved Plasmodium protein, unknown function [Plasmodium berghei] >gi|1063415228|emb|SCN22574.1| conserved Plasmodium protein, unknown function [Plasmodium berghei] >gi|1068928417|emb|SCM15554.1| conserved Plasmodium protein, unknown function [Plasmodium berghei] >gi|1068933047|emb|SCM17346.1| conserved Plasmodium protein, unknown function [Plasmodium berghei])

HSP 1 Score: 62.3882 bits (150), Expect = 4.571e-11
Identity = 28/75 (37.33%), Postives = 46/75 (61.33%), Query Frame = 0
Query:    9 KEVCDGEVPALPLRWWGLFAGILNFFFFGWGTILAGVRSDRPTTIFIGVLQFILPVVGWIWSMVWGYLLISRAEQ 83
             ++ + EVP        +  G++N FFFG+G I  G+ +  P  + IG+LQ  +P+VGWIWS++WG L+I +  +
Sbjct:    7 DKIRNMEVPENGNSSINVMLGVINIFFFGFGMIAIGILNKDPDDLIIGILQLFVPLVGWIWSILWGILIIIKNSK 81          
BLAST of EWM23513.1 vs. NCBI_GenBank
Match: gi|675230732|emb|CDU16498.1| (conserved Plasmodium protein, unknown function [Plasmodium yoelii] >gi|675235940|emb|CDZ11022.1| conserved Plasmodium protein, unknown function [Plasmodium yoelii])

HSP 1 Score: 62.3882 bits (150), Expect = 4.880e-11
Identity = 27/75 (36.00%), Postives = 47/75 (62.67%), Query Frame = 0
Query:    9 KEVCDGEVPALPLRWWGLFAGILNFFFFGWGTILAGVRSDRPTTIFIGVLQFILPVVGWIWSMVWGYLLISRAEQ 83
             ++ + EVP        +  G++N FFFG+G I  G+ +  P  + IG+LQ ++P+VGWIW+++WG L+I +  +
Sbjct:    7 DKIRNMEVPEDGNNSINVMLGVINIFFFGFGMIAIGIINKDPDDLIIGILQLLVPLVGWIWAILWGILIIIKNSK 81          
BLAST of EWM23513.1 vs. NCBI_GenBank
Match: gi|564277756|gb|ETB59176.1| (hypothetical protein YYC_03428 [Plasmodium yoelii 17X])

HSP 1 Score: 63.1586 bits (152), Expect = 5.276e-11
Identity = 27/78 (34.62%), Postives = 48/78 (61.54%), Query Frame = 0
Query:   10 EVCDGEVPALPLRWWGLFAGILNFFFFGWGTILAGVRSDRPTTIFIGVLQFILPVVGWIWSMVWGYLLISRAEQYSSL 87
            ++ + EVP        +  G++N FFFG+G I  G+ +  P  + IG+LQ ++P+VGWIW+++W   L  R  +Y+++
Sbjct:    8 KIRNMEVPEDGNNSINVMLGVINIFFFGFGMIAIGIINKDPDDLIIGILQLLVPLVGWIWAILWDISLKGRTSKYTNI 85          
BLAST of EWM23513.1 vs. NCBI_GenBank
Match: gi|1008950858|gb|KYK68147.1| (putative transmembrane protein [Toxoplasma gondii TgCatPRC2])

HSP 1 Score: 62.003 bits (149), Expect = 1.040e-10
Identity = 35/87 (40.23%), Postives = 50/87 (57.47%), Query Frame = 0
Query:    5 ADVQKEVCDGEVPALPL---RWWGLFAGILNFFFFGWGTILAGVRSDRPTTIFIGVLQFILPVVGWIWSMVWGYLLISRAEQYSSLI 88
            +DV + +    VP  P    +   +  GILN FFFG G I+ G        + IGVLQ +LP+VGWIW++VWG +++ R+   SS I
Sbjct:    4 SDVFQRILHFRVPEPPSPKDKAAYILLGILNCFFFGLGMIIIGFMQSDVVNMMIGVLQLLLPIVGWIWAVVWGVMIVVRSIVPSSNI 90          
BLAST of EWM23513.1 vs. NCBI_GenBank
Match: gi|70951844|ref|XP_745131.1| (conserved Plasmodium protein, unknown function [Plasmodium chabaudi chabaudi] >gi|56525356|emb|CAH80249.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] >gi|675219175|emb|CDR11280.1| conserved Plasmodium protein, unknown function [Plasmodium chabaudi chabaudi] >gi|1061785941|emb|SCL98312.1| conserved Plasmodium protein, unknown function [Plasmodium chabaudi chabaudi])

HSP 1 Score: 61.6178 bits (148), Expect = 1.167e-10
Identity = 26/75 (34.67%), Postives = 47/75 (62.67%), Query Frame = 0
Query:    9 KEVCDGEVPALPLRWWGLFAGILNFFFFGWGTILAGVRSDRPTTIFIGVLQFILPVVGWIWSMVWGYLLISRAEQ 83
             ++ + EVP        +  G++N FFFG+G I  G+ +  P  + IG+LQ ++P+VGWIW+++WG L++ +  +
Sbjct:    7 DKIRNMEVPENGNSSINVMLGVVNIFFFGFGMIAIGILNKDPDDLIIGILQLLVPLVGWIWAILWGILIVIKNSK 81          
BLAST of EWM23513.1 vs. NCBI_GenBank
Match: gi|557733968|gb|ESS30095.1| (putative transmembrane protein [Toxoplasma gondii VEG] >gi|672261842|gb|KFG36183.1| putative transmembrane protein [Toxoplasma gondii p89] >gi|672268632|gb|KFG41638.1| putative transmembrane protein [Toxoplasma gondii GAB2-2007-GAL-DOM2])

HSP 1 Score: 61.6178 bits (148), Expect = 1.425e-10
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 0
Query:   15 EVPALPLRWWGLFAGILNFFFFGWGTILAGVRSDRPTTIFIGVLQFILPVVGWIWSMVWGYLLISRA----EQYSS 86
            E P+   R    F G+LN F FG G I+ G   +  + + IGVLQ +LP+VGWIW++VWG L++ +A     +YSS
Sbjct:   17 EPPSSKDRVAYSFLGLLNCFIFGLGVIILGFIENDVSNMMIGVLQLLLPIVGWIWALVWGVLIVLKAVLKDTEYSS 92          
BLAST of EWM23513.1 vs. NCBI_GenBank
Match: gi|675128630|ref|XP_008886202.1| (hypothetical protein HHA_222260 [Hammondia hammondi] >gi|661334947|gb|KEP63088.1| hypothetical protein HHA_222260 [Hammondia hammondi])

HSP 1 Score: 61.6178 bits (148), Expect = 1.642e-10
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 0
Query:    4 LADVQKEVCDGEVPALPLRW----WGLFAGILNFFFFGWGTILAGVRSDRPTTIFIGVLQFILPVVGWIWSMVWGYLLISRA 81
            L++V +      VP  P       +GL  G+LN FFFG G I+ G   +  + + IGVLQ +LP+VGWIW++VWG L++ +A
Sbjct:    3 LSEVGQRALHLRVPEPPSSKDRVAYGLL-GLLNCFFFGLGVIILGFIENDVSNMMIGVLQLLLPIVGWIWALVWGVLIVLKA 83          
The following BLAST results are available for this feature:
BLAST of EWM23513.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104595|gb|EWM23513.1|8.115e-56100.00hypothetical protein Naga_100352g1 [Nannochloropsi... [more]
gi|553181651|ref|XP_005853602.1|1.704e-3593.75hypothetical protein NGA_0134302 [Nannochloropsis ... [more]
gi|1103665148|emb|CRG95341.1|1.178e-1237.50conserved Plasmodium protein, unknown function [Pl... [more]
gi|675225098|emb|CDS45009.1|4.571e-1137.33conserved Plasmodium protein, unknown function [Pl... [more]
gi|675230732|emb|CDU16498.1|4.880e-1136.00conserved Plasmodium protein, unknown function [Pl... [more]
gi|564277756|gb|ETB59176.1|5.276e-1134.62hypothetical protein YYC_03428 [Plasmodium yoelii ... [more]
gi|1008950858|gb|KYK68147.1|1.040e-1040.23putative transmembrane protein [Toxoplasma gondii ... [more]
gi|70951844|ref|XP_745131.1|1.167e-1034.67conserved Plasmodium protein, unknown function [Pl... [more]
gi|557733968|gb|ESS30095.1|1.425e-1043.42putative transmembrane protein [Toxoplasma gondii ... [more]
gi|675128630|ref|XP_008886202.1|1.642e-1041.46hypothetical protein HHA_222260 [Hammondia hammond... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7177rna7177Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications