EWM23521.1, cds7152 (CDS) Nannochloropsis gaditana

Overview
NameEWM23521.1
Unique Namecds7152
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:608369..609694 +

Link to JBrowse

Properties
Property NameValue
Start range608369
Start range.
Protein idEWM23521.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101309g1.10250.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:608369..609694 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008289lipid binding
Homology
BLAST of EWM23521.1 vs. NCBI_GenBank
Match: gi|585104614|gb|EWM23521.1| (hypothetical protein Naga_101309g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 847.81 bits (2189), Expect = 0.000e+0
Identity = 441/441 (100.00%), Postives = 441/441 (100.00%), Query Frame = 0
Query:    1 LSSSSSSLAWPASSTLLPPSLLQYLHAILASKRERPEVEGEGGREGKDGFEGQGEGEDGGEEGLEGRMQALPLPGARHGLSHPYQAVNEQQDDRGLQTREGYPSHACPPSLPPSLPPSPSLSTSSLSHLSHRLLPRRLSGGGDEGGKEDGGEGGREGGREGHSTAGTTSSLSQYNPLPYLLPSLSRHGTLHSSGASTSSSSQAPNPPSLPPSLPPSFSPHPRTFVELSPLSYLPGSFVKKHLGMVSLHFVKESSLTAVAVGSGGGSGGGREGGRGGRGVTLGTLLQVFLVEVNAMVRAHVAGLGGNALLSYRLVTQERGGRVYRSTTYHMVSVSGDAVRVEANAREGGGEEDGGKEGKEKKEGPRRGRGEGGTAEHPHRVPSQPRHNRQRGRESVSVLEGGREKGGSVGSAPTEFPQARAPEGEGREGRGVTGITRSLSTT 441
            LSSSSSSLAWPASSTLLPPSLLQYLHAILASKRERPEVEGEGGREGKDGFEGQGEGEDGGEEGLEGRMQALPLPGARHGLSHPYQAVNEQQDDRGLQTREGYPSHACPPSLPPSLPPSPSLSTSSLSHLSHRLLPRRLSGGGDEGGKEDGGEGGREGGREGHSTAGTTSSLSQYNPLPYLLPSLSRHGTLHSSGASTSSSSQAPNPPSLPPSLPPSFSPHPRTFVELSPLSYLPGSFVKKHLGMVSLHFVKESSLTAVAVGSGGGSGGGREGGRGGRGVTLGTLLQVFLVEVNAMVRAHVAGLGGNALLSYRLVTQERGGRVYRSTTYHMVSVSGDAVRVEANAREGGGEEDGGKEGKEKKEGPRRGRGEGGTAEHPHRVPSQPRHNRQRGRESVSVLEGGREKGGSVGSAPTEFPQARAPEGEGREGRGVTGITRSLSTT
Sbjct:    1 LSSSSSSLAWPASSTLLPPSLLQYLHAILASKRERPEVEGEGGREGKDGFEGQGEGEDGGEEGLEGRMQALPLPGARHGLSHPYQAVNEQQDDRGLQTREGYPSHACPPSLPPSLPPSPSLSTSSLSHLSHRLLPRRLSGGGDEGGKEDGGEGGREGGREGHSTAGTTSSLSQYNPLPYLLPSLSRHGTLHSSGASTSSSSQAPNPPSLPPSLPPSFSPHPRTFVELSPLSYLPGSFVKKHLGMVSLHFVKESSLTAVAVGSGGGSGGGREGGRGGRGVTLGTLLQVFLVEVNAMVRAHVAGLGGNALLSYRLVTQERGGRVYRSTTYHMVSVSGDAVRVEANAREGGGEEDGGKEGKEKKEGPRRGRGEGGTAEHPHRVPSQPRHNRQRGRESVSVLEGGREKGGSVGSAPTEFPQARAPEGEGREGRGVTGITRSLSTT 441          
BLAST of EWM23521.1 vs. NCBI_GenBank
Match: gi|698809354|ref|XP_009837706.1| (hypothetical protein, variant 1 [Aphanomyces astaci] >gi|574107407|gb|ETV72920.1| hypothetical protein, variant 1 [Aphanomyces astaci])

HSP 1 Score: 106.686 bits (265), Expect = 6.989e-21
Identity = 62/157 (39.49%), Postives = 89/157 (56.69%), Query Frame = 0
Query:  185 SRHGTLHSSGASTSSSSQAPNPPSLPPSLPPSFSPHPRTFVELSPLSYLPGSFVKKHLGMVSLHFVKESSLTAVAVGSGGGSGGGREGGRGGRGVTLGTLLQVFLVEVNAMVRAHVAGLGGNALLSYRLVTQERGGRVYRSTTYHMVSVSGDAVRVE 341
            S H +L       +SS + P  PS    +     PH R ++EL+PLSY+PG+ + ++LG ++LHF+KES      V   GG               LG    +FL E  ++VRAHV  LGGNA+LS+RLV  E   ++YR+  Y+M+SV+GDAV +E
Sbjct:  885 SDHSSLRLQILQNASSFRPPQSPS--ADIAAFIGPHAREWIELTPLSYVPGAKILRYLGRITLHFIKESW----TVRECGG---------------LGAFFHLFLSEAISVVRAHVRALGGNAMLSFRLVPIE-SSQLYRNQVYNMISVTGDAVLLE 1019          
BLAST of EWM23521.1 vs. NCBI_GenBank
Match: gi|298705587|emb|CBJ28838.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 105.531 bits (262), Expect = 1.457e-20
Identity = 55/121 (45.45%), Postives = 77/121 (63.64%), Query Frame = 0
Query:  223 TFVELSPLSYLPGSFVKKHLGMVSLHFVKESSLTAVAVGSGGGSGGGREGGRGGRGVTLGTLLQVFLVEVNAMVRAHVAGLGGNALLSYRLVTQERGGRVYRSTTYHMVSVSGDAVRVEAN 343
              VE++PL  +PG+ V ++LG VSLHF+KES                    RGG    + +    F++EV+A++RA+VA LGGNALLSYRL+ QE GG+VY++  Y+M+SV GDAV VE +
Sbjct: 1190 IMVEMTPLGRIPGARVIRYLGSVSLHFIKES----------------WAASRGGE---VASFFHEFVMEVHAVLRANVAALGGNALLSYRLLPQESGGKVYKNQVYNMISVRGDAVVVEYD 1291          
BLAST of EWM23521.1 vs. NCBI_GenBank
Match: gi|953490384|emb|CEG46609.1| (Predicted Ca2-dependent phospholipid-binding protein [Plasmopara halstedii])

HSP 1 Score: 103.605 bits (257), Expect = 6.713e-20
Identity = 59/135 (43.70%), Postives = 83/135 (61.48%), Query Frame = 0
Query:  215 PSFS-PHPRTFVELSPLSYLPGSFVKKHLGMVSLHFVKESSLTAVAVGSGGGSGGGREGGRGGRGVTLGTLLQVFLVEVNAMVRAHVAGLGGNALLSYRLVTQERGGRVYRSTTYHMVSVSGDAVRVEANAREGG 348
            P+FS P+ R ++EL+PL Y+PG+ V ++LG V+LHF+KES      V   GG               LG    +FL E  A+VRAHV  LGGNA+L++RLV  E   ++YR+  Y+M+S++GD V +E   REGG
Sbjct:  976 PAFSAPYGREWIELTPLGYIPGAHVTRYLGRVTLHFIKESW----TVRESGG---------------LGAFYHLFLSEAIAIVRAHVRSLGGNAMLTFRLVPIE-SSQLYRNQVYNMISITGDVVMIE---REGG 1087          
BLAST of EWM23521.1 vs. NCBI_GenBank
Match: gi|301112709|ref|XP_002998125.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262112419|gb|EEY70471.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 102.449 bits (254), Expect = 7.480e-20
Identity = 58/155 (37.42%), Postives = 89/155 (57.42%), Query Frame = 0
Query:  187 HGTLHSSGASTSSSSQAPNPPSLPPSLPPSFSPHPRTFVELSPLSYLPGSFVKKHLGMVSLHFVKESSLTAVAVGSGGGSGGGREGGRGGRGVTLGTLLQVFLVEVNAMVRAHVAGLGGNALLSYRLVTQERGGRVYRSTTYHMVSVSGDAVRVE 341
            H  +H + + + + S  P  P    ++P   +P+ R ++EL+PL Y+PG+ V ++LG V+LHF+KES      V   GG               LG    +FL E  A+VRAHV  LGGNA+L++RLV  E   ++YR+  Y+M+S++GD V +E
Sbjct:  370 HIHMHRTRSFSHNRSNNPMMPGTTAAIP---APYGREWIELTPLGYIPGAHVTRYLGRVTLHFIKESW----TVRESGG---------------LGAFYHLFLSEAIAIVRAHVRSLGGNAMLTFRLVPIE-SSQLYRNQVYNMISITGDVVMIE 501          
BLAST of EWM23521.1 vs. NCBI_GenBank
Match: gi|673038534|ref|XP_008873228.1| (hypothetical protein H310_09046 [Aphanomyces invadans] >gi|574471345|gb|ETV98353.1| hypothetical protein H310_09046 [Aphanomyces invadans])

HSP 1 Score: 103.219 bits (256), Expect = 7.754e-20
Identity = 63/157 (40.13%), Postives = 91/157 (57.96%), Query Frame = 0
Query:  186 RHGTLHSSGASTSSSSQAPNPPSLPPSLPPSFS-PHPRTFVELSPLSYLPGSFVKKHLGMVSLHFVKESSLTAVAVGSGGGSGGGREGGRGGRGVTLGTLLQVFLVEVNAMVRAHVAGLGGNALLSYRLVTQERGGRVYRSTTYHMVSVSGDAVRVE 341
            R   LH+  AS  S    P  PS+  +   +F  P+ R ++EL+PLSY+PG+ + ++LG ++LHF+KES      V   GG               LG    +FL E  ++VRAHV  LGGNA+LS+RLV  E   ++YR+  Y+M+SV+GDAV +E
Sbjct:  909 RLQILHN--ASAFSQVAPPMSPSVDAAATAAFVGPNAREWIELTPLSYVPGAKILRYLGRITLHFIKESW----TVRECGG---------------LGAFFHLFLSEAISVVRAHVRALGGNAMLSFRLVPIE-SSQLYRNQVYNMISVTGDAVLLE 1043          
BLAST of EWM23521.1 vs. NCBI_GenBank
Match: gi|673038536|ref|XP_008873229.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574471346|gb|ETV98354.1| hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 103.219 bits (256), Expect = 7.965e-20
Identity = 63/157 (40.13%), Postives = 91/157 (57.96%), Query Frame = 0
Query:  186 RHGTLHSSGASTSSSSQAPNPPSLPPSLPPSFS-PHPRTFVELSPLSYLPGSFVKKHLGMVSLHFVKESSLTAVAVGSGGGSGGGREGGRGGRGVTLGTLLQVFLVEVNAMVRAHVAGLGGNALLSYRLVTQERGGRVYRSTTYHMVSVSGDAVRVE 341
            R   LH+  AS  S    P  PS+  +   +F  P+ R ++EL+PLSY+PG+ + ++LG ++LHF+KES      V   GG               LG    +FL E  ++VRAHV  LGGNA+LS+RLV  E   ++YR+  Y+M+SV+GDAV +E
Sbjct:  908 RLQILHN--ASAFSQVAPPMSPSVDAAATAAFVGPNAREWIELTPLSYVPGAKILRYLGRITLHFIKESW----TVRECGG---------------LGAFFHLFLSEAISVVRAHVRALGGNAMLSFRLVPIE-SSQLYRNQVYNMISVTGDAVLLE 1042          
BLAST of EWM23521.1 vs. NCBI_GenBank
Match: gi|301112701|ref|XP_002998121.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262112415|gb|EEY70467.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 101.679 bits (252), Expect = 2.645e-19
Identity = 55/137 (40.15%), Postives = 81/137 (59.12%), Query Frame = 0
Query:  205 NPPSLPPSLPPSFSPHPRTFVELSPLSYLPGSFVKKHLGMVSLHFVKESSLTAVAVGSGGGSGGGREGGRGGRGVTLGTLLQVFLVEVNAMVRAHVAGLGGNALLSYRLVTQERGGRVYRSTTYHMVSVSGDAVRVE 341
            N P +P +     +P+ R ++EL+PL Y+PG+ V ++LG V+LHF+KES      V   GG               LG    +FL E  A+VRAHV  LGGNA+L++RLV  E   ++YR+  Y+M+S++GD V +E
Sbjct:  907 NNPMMPGTTAAIPAPYVREWIELTPLGYIPGAHVTRYLGRVTLHFIKESW----TVRESGG---------------LGAFYHLFLSEAIAIVRAHVRSLGGNAMLTFRLVPIE-SSQLYRNQVYNMISITGDVVMIE 1023          
BLAST of EWM23521.1 vs. NCBI_GenBank
Match: gi|1173946045|gb|OQR94613.1| (hypothetical protein ACHHYP_01091 [Achlya hypogyna])

HSP 1 Score: 99.3673 bits (246), Expect = 1.494e-18
Identity = 63/153 (41.18%), Postives = 87/153 (56.86%), Query Frame = 0
Query:  202 QAPNPPSLPPSLP--PSFSPHP---------RTFVELSPLSYLPGSFVKKHLGMVSLHFVKESSLTAVAVGSGGGSGGGREGGRGGRGVTLGTLLQVFLVEVNAMVRAHVAGLGGNALLSYRLVTQERGGRVYRSTTYHMVSVSGDAVRVEAN 343
            QAP   + P + P  P  S HP         R ++EL+PLSY+PGS + ++LG ++LHF+KES      V   GG               LG    +FL E  A+VRAHV  LGGNA+LS+RLV  E   ++YR+  Y+M+SV+GDAV +E +
Sbjct:  904 QAPTSVASPTARPTSPLASGHPNPFHQSSSAREWIELTPLSYVPGSKILRYLGRITLHFIKESW----TVRELGG---------------LGAFFHLFLSEAIAVVRAHVRALGGNAMLSFRLVPIE-SSQLYRNQVYNMISVTGDAVLLERD 1036          
BLAST of EWM23521.1 vs. NCBI_GenBank
Match: gi|970652120|gb|KUF90839.1| (Amino Acid-Polyamine-Organocation (APC) Family [Phytophthora nicotianae])

HSP 1 Score: 98.9821 bits (245), Expect = 1.644e-18
Identity = 52/124 (41.94%), Postives = 76/124 (61.29%), Query Frame = 0
Query:  218 SPHPRTFVELSPLSYLPGSFVKKHLGMVSLHFVKESSLTAVAVGSGGGSGGGREGGRGGRGVTLGTLLQVFLVEVNAMVRAHVAGLGGNALLSYRLVTQERGGRVYRSTTYHMVSVSGDAVRVE 341
            +P+ R ++EL+PL Y+PG+ V ++LG V+LHF+KES      V   GG               LG    +FL E  A+VRAHV  LGGNA+L++RLV  E   ++YR+  Y+M+S++GD V +E
Sbjct:  593 APYGREWIELTPLGYIPGAHVTRYLGRVTLHFIKESW----TVRESGG---------------LGAFYHLFLSEAIAIVRAHVRSLGGNAMLTFRLVPIE-SSQLYRNQVYNMISITGDVVMIE 696          
The following BLAST results are available for this feature:
BLAST of EWM23521.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104614|gb|EWM23521.1|0.000e+0100.00hypothetical protein Naga_101309g1, partial [Nanno... [more]
gi|698809354|ref|XP_009837706.1|6.989e-2139.49hypothetical protein, variant 1 [Aphanomyces astac... [more]
gi|298705587|emb|CBJ28838.1|1.457e-2045.45conserved unknown protein [Ectocarpus siliculosus][more]
gi|953490384|emb|CEG46609.1|6.713e-2043.70Predicted Ca2-dependent phospholipid-binding prote... [more]
gi|301112709|ref|XP_002998125.1|7.480e-2037.42conserved hypothetical protein [Phytophthora infes... [more]
gi|673038534|ref|XP_008873228.1|7.754e-2040.13hypothetical protein H310_09046 [Aphanomyces invad... [more]
gi|673038536|ref|XP_008873229.1|7.965e-2040.13hypothetical protein, variant [Aphanomyces invadan... [more]
gi|301112701|ref|XP_002998121.1|2.645e-1940.15conserved hypothetical protein [Phytophthora infes... [more]
gi|1173946045|gb|OQR94613.1|1.494e-1841.18hypothetical protein ACHHYP_01091 [Achlya hypogyna... [more]
gi|970652120|gb|KUF90839.1|1.644e-1841.94Amino Acid-Polyamine-Organocation (APC) Family [Ph... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7169rna7169Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications