EWM23522.1, cds7151 (CDS) Nannochloropsis gaditana

Overview
NameEWM23522.1
Unique Namecds7151
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:605308..605458 -
Alignment locationCM002470.1:605015..605127 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23522.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101879g1.5177.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:605308..605458 -
CM002470.1supercontigCM002470.1:605015..605127 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM23522.1 vs. NCBI_GenBank
Match: gi|553186188|ref|XP_005854375.1| (hypothetical protein NGA_0222900 [Nannochloropsis gaditana CCMP526] >gi|422294681|gb|EKU21981.1| hypothetical protein NGA_0222900 [Nannochloropsis gaditana CCMP526] >gi|585104618|gb|EWM23522.1| hypothetical protein Naga_101879g1 [Nannochloropsis gaditana])

HSP 1 Score: 181.8 bits (460), Expect = 4.097e-58
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0
Query:    1 MPGFSLRSQDAWRNHPMLASGFKRPIPNFTLACGIFLGLVAVDWANKAINGDGHHHANPVSVTFVDDIDGPSTTVIEESKGSHGARH 87
            MPGFSLRSQDAWRNHPMLASGFKRPIPNFTLACGIFLGLVAVDWANKAINGDGHHHANPVSVTFVDDIDGPSTTVIEESKGSHGARH
Sbjct:    1 MPGFSLRSQDAWRNHPMLASGFKRPIPNFTLACGIFLGLVAVDWANKAINGDGHHHANPVSVTFVDDIDGPSTTVIEESKGSHGARH 87          
BLAST of EWM23522.1 vs. NCBI_GenBank
Match: gi|1173950685|gb|OQR98634.1| (hypothetical protein ACHHYP_08332 [Achlya hypogyna])

HSP 1 Score: 54.299 bits (129), Expect = 5.342e-8
Identity = 28/62 (45.16%), Postives = 36/62 (58.06%), Query Frame = 0
Query:    6 LRSQDAWRNHPMLASGFKRPIPNFTLACGIFLGLVAVDWANKAINGDGHHHANPVSVTFVDD 67
            L  QDAWR HP L +  K+P+P   +A GIF     V  A  AI G GHH A+  +VT+V +
Sbjct:    3 LAHQDAWRKHPFLTNCTKKPLPGLGIAAGIF----GVYLAVGAITGSGHHDAHHANVTYVKE 60          
BLAST of EWM23522.1 vs. NCBI_GenBank
Match: gi|673039203|ref|XP_008873562.1| (hypothetical protein H310_09302 [Aphanomyces invadans] >gi|574470992|gb|ETV98001.1| hypothetical protein H310_09302 [Aphanomyces invadans])

HSP 1 Score: 53.5286 bits (127), Expect = 1.406e-7
Identity = 26/65 (40.00%), Postives = 34/65 (52.31%), Query Frame = 0
Query:    6 LRSQDAWRNHPMLASGFKRPIPNFTLACGIFLGLVAVDWANKAINGDGHHHANPVSVTFVDDIDG 70
            L  QDAWR+HP L    K+P+P F +A GIF   + VD      N   H HA+   V +V +  G
Sbjct:    3 LAGQDAWRSHPFLTGCIKKPVPGFGMAAGIFAVYLTVDTIANLGNKTSHSHAHHAPVVYVKEEIG 67          
BLAST of EWM23522.1 vs. NCBI_GenBank
Match: gi|669149946|ref|XP_008610535.1| (hypothetical protein SDRG_06532 [Saprolegnia diclina VS20] >gi|530737531|gb|EQC35773.1| hypothetical protein SDRG_06532 [Saprolegnia diclina VS20])

HSP 1 Score: 52.7582 bits (125), Expect = 2.491e-7
Identity = 27/65 (41.54%), Postives = 37/65 (56.92%), Query Frame = 0
Query:    6 LRSQDAWRNHPMLASGFKRPIPNFTLACGIFLGLVAVDWANKAINGDGHHHANPVSVTFVDDIDG 70
            L  QDAWR HP L++  K+P+P F +A GIF   +A+     + N    HHA   SVT+V +  G
Sbjct:    3 LAHQDAWRKHPFLSNCTKKPLPGFVIAVGIFSAYLAIGAVTGSGNSHAGHHA---SVTYVKEEIG 64          
The following BLAST results are available for this feature:
BLAST of EWM23522.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|553186188|ref|XP_005854375.1|4.097e-58100.00hypothetical protein NGA_0222900 [Nannochloropsis ... [more]
gi|1173950685|gb|OQR98634.1|5.342e-845.16hypothetical protein ACHHYP_08332 [Achlya hypogyna... [more]
gi|673039203|ref|XP_008873562.1|1.406e-740.00hypothetical protein H310_09302 [Aphanomyces invad... [more]
gi|669149946|ref|XP_008610535.1|2.491e-741.54hypothetical protein SDRG_06532 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7168rna7168Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications