EWM23538.1, cds7135 (CDS) Nannochloropsis gaditana

Overview
NameEWM23538.1
Unique Namecds7135
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:573152..573674 +
Alignment locationCM002470.1:573827..573938 +
Alignment locationCM002470.1:574230..574383 +

Link to JBrowse

Properties
Property NameValue
End range.
End range574383
Protein idEWM23538.1
Producter degradation-enhancing alpha-mannosidase-like protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101044g2.3110.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:573152..573674 +
CM002470.1supercontigCM002470.1:573827..573938 +
CM002470.1supercontigCM002470.1:574230..574383 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005488binding
GO:0004571mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
GO:0005509calcium ion binding
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR001382Glyco_hydro_47
Homology
[Close]
BLAST of EWM23538.1 vs. NCBI_GenBank
Match: gi|585104649|gb|EWM23538.1| (er degradation-enhancing alpha-mannosidase-like protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 518.85 bits (1335), Expect = 0.000e+0
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0 
Query:    1 MFSPPSSSSSSSSSSSSSFSSSSSSSSSSSSSSFSSSSSSSSSTITTHPCSLAFQIRHSNAPSSASVLVRREMALRFERTSSAVLPVYSRASWLASGLLLAFFLLVHTFQLTNAQLEPAPVLPPPQTRPLPKVHLSEQERVLLRDESREMFYHAFNSYMAHAYPFDELMPLSCKGRDWRKRDRGTLDDPLGGYALTLVDSLDMLAVIGDYLDFYQAVQEVIRTLRFDRNVTVSVFEATIRVLGGLLSAHSILLSEEMAPRVSV 263
            MFSPPSSSSSSSSSSSSSFSSSSSSSSSSSSSSFSSSSSSSSSTITTHPCSLAFQIRHSNAPSSASVLVRREMALRFERTSSAVLPVYSRASWLASGLLLAFFLLVHTFQLTNAQLEPAPVLPPPQTRPLPKVHLSEQERVLLRDESREMFYHAFNSYMAHAYPFDELMPLSCKGRDWRKRDRGTLDDPLGGYALTLVDSLDMLAVIGDYLDFYQAVQEVIRTLRFDRNVTVSVFEATIRVLGGLLSAHSILLSEEMAPRVSV
Sbjct:    1 MFSPPSSSSSSSSSSSSSFSSSSSSSSSSSSSSFSSSSSSSSSTITTHPCSLAFQIRHSNAPSSASVLVRREMALRFERTSSAVLPVYSRASWLASGLLLAFFLLVHTFQLTNAQLEPAPVLPPPQTRPLPKVHLSEQERVLLRDESREMFYHAFNSYMAHAYPFDELMPLSCKGRDWRKRDRGTLDDPLGGYALTLVDSLDMLAVIGDYLDFYQAVQEVIRTLRFDRNVTVSVFEATIRVLGGLLSAHSILLSEEMAPRVSV 263
[Close]
BLAST of EWM23538.1 vs. NCBI_GenBank
Match: gi|553176537|ref|XP_005852382.1| (ER degradation enhancer, mannosidase alpha-like 1, partial [Nannochloropsis gaditana CCMP526] >gi|422299882|gb|EKU23503.1| ER degradation enhancer, mannosidase alpha-like 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 460.685 bits (1184), Expect = 3.559e-162
Identity = 226/231 (97.84%), Postives = 228/231 (98.70%), Query Frame = 0 
Query:   29 SSSSSFSSSSSSSSSTITTHPCSLAFQIRHSNAPSSASVLVRREMALRFERTSSAVLPVYSRASWLASGLLLAFFLLVHTFQLTNAQLEPAPVLPPPQTRPLPKVHLSEQERVLLRDESREMFYHAFNSYMAHAYPFDELMPLSCKGRDWRKRDRGTLDDPLGGYALTLVDSLDMLAVIGDYLDFYQAVQEVIRTLRFDRNVTVSVFEATIRVLGGLLSAHSILLSEEMAP 259
            SSSSS SSSSSSSSST TTHPCSLAFQIRHSNAPSSASVLVRREMALRF+RTSSAVLP+YSRASWLASGLLLAFFLLVHTFQLTNAQLEPAPV PPPQTRPLPKVHLSEQERVLLRDESREMFYHAFNSYMAHAYPFDELMPLSCKGRDWRKRDRGTLDDPLGGYALTLVDSLDMLAVIGDYLDFYQAVQEVIRTLRFDRNVTVSVFEATIRVLGGLLSAHSILLSEEMAP
Sbjct:    1 SSSSSSSSSSSSSSSTTTTHPCSLAFQIRHSNAPSSASVLVRREMALRFKRTSSAVLPIYSRASWLASGLLLAFFLLVHTFQLTNAQLEPAPVFPPPQTRPLPKVHLSEQERVLLRDESREMFYHAFNSYMAHAYPFDELMPLSCKGRDWRKRDRGTLDDPLGGYALTLVDSLDMLAVIGDYLDFYQAVQEVIRTLRFDRNVTVSVFEATIRVLGGLLSAHSILLSEEMAP 231
[Close]
BLAST of EWM23538.1 vs. NCBI_GenBank
Match: gi|953486948|emb|CEG49010.1| (er degradation-enhancing alpha-mannosidase-like protein [Plasmopara halstedii])

HSP 1 Score: 167.933 bits (424), Expect = 4.401e-44
Identity = 76/121 (62.81%), Postives = 97/121 (80.17%), Query Frame = 0 
Query:  135 LSEQERVLLRDESREMFYHAFNSYMAHAYPFDELMPLSCKGRDWRKRDRGTLDDPLGGYALTLVDSLDMLAVIGDYLDFYQAVQEVIRTLRFDRNVTVSVFEATIRVLGGLLSAHSILLSE 255
            + + ER  L+ ++R+MFYH + +YM HAYP+DEL PLSC GR W +R+RG LDD LGG++LTL+DSLDMLAV+GD  +F +AV  VI T+ FDRNVTVSVFE+TIRV+GGLLSAH +  SE
Sbjct:    1 MHDSERKFLQQQARDMFYHGYRNYMEHAYPWDELKPLSCSGRRWDRRERGDLDDVLGGFSLTLIDSLDMLAVLGDRDEFKRAVHLVITTVSFDRNVTVSVFESTIRVIGGLLSAHMLASSE 121
[Close]
BLAST of EWM23538.1 vs. NCBI_GenBank
Match: gi|635362822|emb|CCI48519.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 166.777 bits (421), Expect = 1.350e-43
Identity = 70/113 (61.95%), Postives = 97/113 (85.84%), Query Frame = 0 
Query:  139 ERVLLRDESREMFYHAFNSYMAHAYPFDELMPLSCKGRDWRKRDRGTLDDPLGGYALTLVDSLDMLAVIGDYLDFYQAVQEVIRTLRFDRNVTVSVFEATIRVLGGLLSAHSI 251
            ER+ L++++REMFYH +N+YM HA+P+DEL PL+C+GR W +R+RG LD  LGG++LTL+DSLDMLA++GD+ +F +AV+ VI+ + FDRNVTVSVFE+ IRV+GGLLSAH +
Sbjct:   26 ERIHLKNKAREMFYHGYNNYMEHAFPWDELKPLTCEGRRWDRRERGDLDQTLGGFSLTLIDSLDMLAILGDHKEFRRAVKLVIQHVTFDRNVTVSVFESAIRVIGGLLSAHVL 138
[Close]
BLAST of EWM23538.1 vs. NCBI_GenBank
Match: gi|325188591|emb|CCA23124.1| (ER degradationenhancing alphamannosidaselike protein putative [Albugo laibachii Nc14])

HSP 1 Score: 166.392 bits (420), Expect = 1.836e-43
Identity = 70/113 (61.95%), Postives = 96/113 (84.96%), Query Frame = 0 
Query:  139 ERVLLRDESREMFYHAFNSYMAHAYPFDELMPLSCKGRDWRKRDRGTLDDPLGGYALTLVDSLDMLAVIGDYLDFYQAVQEVIRTLRFDRNVTVSVFEATIRVLGGLLSAHSI 251
            ER+ L++++REMFYH +N+YM HA+P+DEL PL+C+GR W +R+RG LD  LGG++LTL+DSLDMLA++GD+ +F  AV+ VI+ + FDRNVTVSVFE+ IRV+GGLLSAH +
Sbjct:   26 ERIHLKNKAREMFYHGYNNYMEHAFPWDELKPLTCEGRRWDRRERGDLDQTLGGFSLTLIDSLDMLAILGDHEEFRHAVKLVIQHVTFDRNVTVSVFESAIRVIGGLLSAHVL 138
[Close]
BLAST of EWM23538.1 vs. NCBI_GenBank
Match: gi|567984080|gb|ETL34457.1| (hypothetical protein L916_13309 [Phytophthora parasitica] >gi|570945463|gb|ETP10720.1| hypothetical protein F441_13694 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 159.458 bits (402), Expect = 6.623e-41
Identity = 72/120 (60.00%), Postives = 95/120 (79.17%), Query Frame = 0 
Query:  130 LPKVHLSEQERVLLRDESREMFYHAFNSYMAHAYPFDELMPLSCKGRDWRKRDRGTLDDPLGGYALTLVDSLDMLAVIGDYLDFYQAVQEVIRTLRFDRNVTVSVFEATIRVLGGLLSAH 249
            L   H+   ER  L+ ++R+MFYH + +YM HAYP+DEL PLSC GR W +R+RG LDD LGG++LTLVDSLDMLAV+GD  +F +AV+ +  ++ FDR+VTVSVFE+TIRV+GGL+SAH
Sbjct:   26 LCSAHMHVSERRHLQQQARDMFYHGYRNYMKHAYPWDELKPLSCSGRRWDRRERGDLDDVLGGFSLTLVDSLDMLAVLGDCDEFARAVKLISSSVSFDRDVTVSVFESTIRVIGGLVSAH 145
[Close]
BLAST of EWM23538.1 vs. NCBI_GenBank
Match: gi|567955398|gb|ETK81031.1| (hypothetical protein L915_13421 [Phytophthora parasitica])

HSP 1 Score: 159.458 bits (402), Expect = 6.623e-41
Identity = 72/120 (60.00%), Postives = 95/120 (79.17%), Query Frame = 0 
Query:  130 LPKVHLSEQERVLLRDESREMFYHAFNSYMAHAYPFDELMPLSCKGRDWRKRDRGTLDDPLGGYALTLVDSLDMLAVIGDYLDFYQAVQEVIRTLRFDRNVTVSVFEATIRVLGGLLSAH 249
            L   H+   ER  L+ ++R+MFYH + +YM HAYP+DEL PLSC GR W +R+RG LDD LGG++LTLVDSLDMLAV+GD  +F +AV+ +  ++ FDR+VTVSVFE+TIRV+GGL+SAH
Sbjct:   26 LCSAHMHVSERRHLQQQARDMFYHGYRNYMKHAYPWDELKPLSCSGRRWDRRERGDLDDVLGGFSLTLVDSLDMLAVLGDCDEFARAVKLISSSVSFDRDVTVSVFESTIRVIGGLVSAH 145
[Close]
BLAST of EWM23538.1 vs. NCBI_GenBank
Match: gi|570321684|gb|ETO69632.1| (hypothetical protein F444_13823 [Phytophthora parasitica P1976])

HSP 1 Score: 159.458 bits (402), Expect = 6.823e-41
Identity = 72/120 (60.00%), Postives = 95/120 (79.17%), Query Frame = 0 
Query:  130 LPKVHLSEQERVLLRDESREMFYHAFNSYMAHAYPFDELMPLSCKGRDWRKRDRGTLDDPLGGYALTLVDSLDMLAVIGDYLDFYQAVQEVIRTLRFDRNVTVSVFEATIRVLGGLLSAH 249
            L   H+   ER  L+ ++R+MFYH + +YM HAYP+DEL PLSC GR W +R+RG LDD LGG++LTLVDSLDMLAV+GD  +F +AV+ +  ++ FDR+VTVSVFE+TIRV+GGL+SAH
Sbjct:   26 LCSAHMHVSERRHLQQQARDMFYHGYRNYMKHAYPWDELKPLSCSGRRWDRRERGDLDDVLGGFSLTLVDSLDMLAVLGDCDEFARAVKLISSSVSFDRDVTVSVFESTIRVIGGLVSAH 145
[Close]
BLAST of EWM23538.1 vs. NCBI_GenBank
Match: gi|566018019|gb|ETI40930.1| (hypothetical protein F443_13768 [Phytophthora parasitica P1569])

HSP 1 Score: 159.458 bits (402), Expect = 6.890e-41
Identity = 72/120 (60.00%), Postives = 95/120 (79.17%), Query Frame = 0 
Query:  130 LPKVHLSEQERVLLRDESREMFYHAFNSYMAHAYPFDELMPLSCKGRDWRKRDRGTLDDPLGGYALTLVDSLDMLAVIGDYLDFYQAVQEVIRTLRFDRNVTVSVFEATIRVLGGLLSAH 249
            L   H+   ER  L+ ++R+MFYH + +YM HAYP+DEL PLSC GR W +R+RG LDD LGG++LTLVDSLDMLAV+GD  +F +AV+ +  ++ FDR+VTVSVFE+TIRV+GGL+SAH
Sbjct:   26 LCSAHMHVSERRHLQQQARDMFYHGYRNYMKHAYPWDELKPLSCSGRRWDRRERGDLDDVLGGFSLTLVDSLDMLAVLGDCDEFARAVKLISSSVSFDRDVTVSVFESTIRVIGGLVSAH 145
[Close]
BLAST of EWM23538.1 vs. NCBI_GenBank
Match: gi|568013550|gb|ETL87727.1| (hypothetical protein L917_13128 [Phytophthora parasitica])

HSP 1 Score: 159.458 bits (402), Expect = 6.959e-41
Identity = 72/120 (60.00%), Postives = 95/120 (79.17%), Query Frame = 0 
Query:  130 LPKVHLSEQERVLLRDESREMFYHAFNSYMAHAYPFDELMPLSCKGRDWRKRDRGTLDDPLGGYALTLVDSLDMLAVIGDYLDFYQAVQEVIRTLRFDRNVTVSVFEATIRVLGGLLSAH 249
            L   H+   ER  L+ ++R+MFYH + +YM HAYP+DEL PLSC GR W +R+RG LDD LGG++LTLVDSLDMLAV+GD  +F +AV+ +  ++ FDR+VTVSVFE+TIRV+GGL+SAH
Sbjct:   26 LCSAHMHVSERRHLQQQARDMFYHGYRNYMKHAYPWDELKPLSCSGRRWDRRERGDLDDVLGGFSLTLVDSLDMLAVLGDCDEFARAVKLISSSVSFDRDVTVSVFESTIRVIGGLVSAH 145
The following BLAST results are available for this feature:
BLAST of EWM23538.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104649|gb|EWM23538.1|0.000e+0100.00er degradation-enhancing alpha-mannosidase-like pr... [more]
gi|553176537|ref|XP_005852382.1|3.559e-16297.84ER degradation enhancer, mannosidase alpha-like 1,... [more]
gi|953486948|emb|CEG49010.1|4.401e-4462.81er degradation-enhancing alpha-mannosidase-like pr... [more]
gi|635362822|emb|CCI48519.1|1.350e-4361.95unnamed protein product [Albugo candida][more]
gi|325188591|emb|CCA23124.1|1.836e-4361.95ER degradationenhancing alphamannosidaselike prote... [more]
gi|567984080|gb|ETL34457.1|6.623e-4160.00hypothetical protein L916_13309 [Phytophthora para... [more]
gi|567955398|gb|ETK81031.1|6.623e-4160.00hypothetical protein L915_13421 [Phytophthora para... [more]
gi|570321684|gb|ETO69632.1|6.823e-4160.00hypothetical protein F444_13823 [Phytophthora para... [more]
gi|566018019|gb|ETI40930.1|6.890e-4160.00hypothetical protein F443_13768 [Phytophthora para... [more]
gi|568013550|gb|ETL87727.1|6.959e-4160.00hypothetical protein L917_13128 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7152rna7152Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications