EWM23540.1, cds7133 (CDS) Nannochloropsis gaditana

Overview
NameEWM23540.1
Unique Namecds7133
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:568769..570467 +

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Properties
Property NameValue
Protein idEWM23540.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100961g2.3621.mrna
GbkeyCDS
End range.
End range570467
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:568769..570467 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR011989ARM-like
Homology
[Close]
BLAST of EWM23540.1 vs. NCBI_GenBank
Match: gi|585104652|gb|EWM23540.1| (hypothetical protein Naga_100961g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 1088.56 bits (2814), Expect = 0.000e+0
Identity = 566/566 (100.00%), Postives = 566/566 (100.00%), Query Frame = 0 
Query:    1 MRKDSTAEEGEAYTRGGRNWGCGITKPHIFILKTLASVFNLSLPPFPHMFPRFPPSLPPSFPSLTSDAVGRQFEALASVLPHLPSYSLSSLALFTRQLLQLFLLAKSPTYRALLVGFLETVDWPLLTAVAAEARRAPSSRPCSGALGKRGVEGERGSGGRGTGGGEDPVGRRAHFPTSDAPSISSPAPAVSTLASPSLLPSLPNLLRHLLNDESQADVQRRSLSLRLLGLLAHPTASPNLHLPSLLIDTSLPSLIPGIPSAACTALSTLARQHPPFLSRSLLPSLEAILLSDTHALDEAAKRPLLESCACLAASVFPLPPAHPPSLPPLEASPRPSDWVRARNLLLQALPRLHAPSTHITALSSLTALGRDRWLSPRRQKAEEGGLANREEGGEGNDEVLPILTALVDHVRTGLAVGPYVSEHASLCALRLLRALPPSLPPSLLQRPILTALLKRLFETPPLYNGSLLASYLRLLGALSLTTHPSTSSSPPSIAASILSALVADDLLVWILPSSSPPPVPLPPRAGREGGREGGRSLATSAQEEAMVRLVWTQALASTLVRVDAEG 566
            MRKDSTAEEGEAYTRGGRNWGCGITKPHIFILKTLASVFNLSLPPFPHMFPRFPPSLPPSFPSLTSDAVGRQFEALASVLPHLPSYSLSSLALFTRQLLQLFLLAKSPTYRALLVGFLETVDWPLLTAVAAEARRAPSSRPCSGALGKRGVEGERGSGGRGTGGGEDPVGRRAHFPTSDAPSISSPAPAVSTLASPSLLPSLPNLLRHLLNDESQADVQRRSLSLRLLGLLAHPTASPNLHLPSLLIDTSLPSLIPGIPSAACTALSTLARQHPPFLSRSLLPSLEAILLSDTHALDEAAKRPLLESCACLAASVFPLPPAHPPSLPPLEASPRPSDWVRARNLLLQALPRLHAPSTHITALSSLTALGRDRWLSPRRQKAEEGGLANREEGGEGNDEVLPILTALVDHVRTGLAVGPYVSEHASLCALRLLRALPPSLPPSLLQRPILTALLKRLFETPPLYNGSLLASYLRLLGALSLTTHPSTSSSPPSIAASILSALVADDLLVWILPSSSPPPVPLPPRAGREGGREGGRSLATSAQEEAMVRLVWTQALASTLVRVDAEG
Sbjct:    1 MRKDSTAEEGEAYTRGGRNWGCGITKPHIFILKTLASVFNLSLPPFPHMFPRFPPSLPPSFPSLTSDAVGRQFEALASVLPHLPSYSLSSLALFTRQLLQLFLLAKSPTYRALLVGFLETVDWPLLTAVAAEARRAPSSRPCSGALGKRGVEGERGSGGRGTGGGEDPVGRRAHFPTSDAPSISSPAPAVSTLASPSLLPSLPNLLRHLLNDESQADVQRRSLSLRLLGLLAHPTASPNLHLPSLLIDTSLPSLIPGIPSAACTALSTLARQHPPFLSRSLLPSLEAILLSDTHALDEAAKRPLLESCACLAASVFPLPPAHPPSLPPLEASPRPSDWVRARNLLLQALPRLHAPSTHITALSSLTALGRDRWLSPRRQKAEEGGLANREEGGEGNDEVLPILTALVDHVRTGLAVGPYVSEHASLCALRLLRALPPSLPPSLLQRPILTALLKRLFETPPLYNGSLLASYLRLLGALSLTTHPSTSSSPPSIAASILSALVADDLLVWILPSSSPPPVPLPPRAGREGGREGGRSLATSAQEEAMVRLVWTQALASTLVRVDAEG 566
[Close]
BLAST of EWM23540.1 vs. NCBI_GenBank
Match: gi|553179816|ref|XP_005852767.1| (hypothetical protein NGA_0721200, partial [Nannochloropsis gaditana CCMP526] >gi|422295766|gb|EKU23065.1| hypothetical protein NGA_0721200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 116.701 bits (291), Expect = 2.945e-27
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 0 
Query:   63 SLTSDAVGRQFEALASVLPHLPSYSLSSLALFTRQLLQLFLLAKSPTYRALLVGFLETVDW 123
            ++ SDAVGRQFEALASVLPHLPSYSLSSLALFTRQLLQLFLLAKSPTYRALLVGFLETVDW
Sbjct:   76 AIASDAVGRQFEALASVLPHLPSYSLSSLALFTRQLLQLFLLAKSPTYRALLVGFLETVDW 136
The following BLAST results are available for this feature:
BLAST of EWM23540.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585104652|gb|EWM23540.1|0.000e+0100.00hypothetical protein Naga_100961g2, partial [Nanno... [more]
gi|553179816|ref|XP_005852767.1|2.945e-2795.08hypothetical protein NGA_0721200, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7150rna7150Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications