EWM23547.1, cds7126 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23547.1 vs. NCBI_GenBank
Match: gi|585104663|gb|EWM23547.1| (expressed unknown protein [Nannochloropsis gaditana]) HSP 1 Score: 370.163 bits (949), Expect = 1.292e-129 Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
Query: 1 MARHRRREDRGSPSIFPSSSALLLFLSCLCDNSRAFCLYQRPAHHFTSFLLHGRQPFSSFPLASSFSPSASLPTSSLASSTSPAEPLDNVRETIQVRFINTPDGNDVVTTAQEGDNLMKVGDKAGISIPRACCTGLCGTCTSDLRDPSYTFKGEDKPAGAREGYQTIRACSTQPLARRLSSG 182
MARHRRREDRGSPSIFPSSSALLLFLSCLCDNSRAFCLYQRPAHHFTSFLLHGRQPFSSFPLASSFSPSASLPTSSLASSTSPAEPLDNVRETIQVRFINTPDGNDVVTTAQEGDNLMKVGDKAGISIPRACCTGLCGTCTSDLRDPSYTFKGEDKPAGAREGYQTIRACSTQPLARRLSSG
Sbjct: 1 MARHRRREDRGSPSIFPSSSALLLFLSCLCDNSRAFCLYQRPAHHFTSFLLHGRQPFSSFPLASSFSPSASLPTSSLASSTSPAEPLDNVRETIQVRFINTPDGNDVVTTAQEGDNLMKVGDKAGISIPRACCTGLCGTCTSDLRDPSYTFKGEDKPAGAREGYQTIRACSTQPLARRLSSG 182
BLAST of EWM23547.1 vs. NCBI_GenBank
Match: gi|1189383611|gb|OSX70920.1| (hypothetical protein BU14_0634s0006 [Porphyra umbilicalis]) HSP 1 Score: 88.5817 bits (218), Expect = 8.853e-18 Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 0
Query: 94 IQVRFINTPDGNDVVTTAQEGDNLMKVGDKAGISIPRACCTGLCGTCTSDLRDPSYT---FKGEDKPAGAREGYQTIRACSTQ 173
+ VRFINTP G DV+ A G+ L+ VGD G++IPR+C +GLCG+CT +L+DPS+ + G R G+QTIRACST+
Sbjct: 122 VAVRFINTPTGEDVLAVANPGERLLSVGDGVGLTIPRSCVSGLCGSCTCELQDPSWVPEDDDADGDGDGGRPGWQTIRACSTE 204
BLAST of EWM23547.1 vs. NCBI_GenBank
Match: gi|545712926|ref|XP_005708767.1| (hypothetical protein Gasu_06560 [Galdieria sulphuraria] >gi|452825249|gb|EME32247.1| hypothetical protein Gasu_06560 [Galdieria sulphuraria]) HSP 1 Score: 72.0182 bits (175), Expect = 5.903e-12 Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 0
Query: 94 IQVRFINTPDGNDVVTTAQEGDNLMKVGDKAGISIPRACCTGLCGTCTSDLRDPS 148
I VRFINTP G D+V A+ +NLM V D G+ IPR C TG+CGTCT++L D S
Sbjct: 104 IAVRFINTPTGEDIVVAAKPSENLMDVADSVGLKIPRYCETGVCGTCTAELEDLS 158
BLAST of EWM23547.1 vs. NCBI_GenBank
Match: gi|544214309|ref|XP_005537301.1| (hypothetical protein CYME_CMN164C [Cyanidioschyzon merolae strain 10D] >gi|449017863|dbj|BAM81265.1| hypothetical protein CYME_CMN164C [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 65.4698 bits (158), Expect = 2.359e-9 Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 0
Query: 94 IQVRFINTPDGNDVVTTAQEGDNLMKVGDKAGISIPRACCTGLCGTCTSDLRDPSYTFKGEDKPAGAREGYQTIRACSTQ 173
++VRFINTP G ++ T A G ++ V D+ G+ IPR C +G+CG CT D+ PS P G QT+R CST+
Sbjct: 125 VKVRFINTPGGLELETMAPPGSIVLAVADELGLRIPRGCTSGVCGACTCDMVHPSL-------PG----GRQTVRVCSTK 193
BLAST of EWM23547.1 vs. NCBI_GenBank
Match: gi|299472290|emb|CBN79703.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 60.077 bits (144), Expect = 1.934e-7 Identity = 32/79 (40.51%), Postives = 43/79 (54.43%), Query Frame = 0
Query: 94 IQVRFINTPDGNDVVTTAQEGDNLMKVGDKAGISIPRACCTGLCGTCTSDLRDPSYTFKGEDKPAGAREGYQTIRACST 172
+ VRFINT DV T A G+ + KV + G+ I AC +G+CGTC +DL D + R G+Q +RAC T
Sbjct: 39 VGVRFINTSGDPDVCTAAYPGEIVTKVAKRCGVKIATACNSGICGTCMTDLEDAN--------GKSYRPGFQVVRACVT 109
BLAST of EWM23547.1 vs. NCBI_GenBank
Match: gi|551677410|ref|XP_005841458.1| (hypothetical protein GUITHDRAFT_160680, partial [Guillardia theta CCMP2712] >gi|428185626|gb|EKX54478.1| hypothetical protein GUITHDRAFT_160680, partial [Guillardia theta CCMP2712]) HSP 1 Score: 60.077 bits (144), Expect = 2.505e-7 Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 0
Query: 102 PDGND-----VVTTAQEGDNLMKVGDKAGISIPRACCTGLCGTCTSDLRDPSY 149
PD N V+ A GD L+ VGD GIS+PR C TGLCG+CT D+ DPS+
Sbjct: 67 PDKNKRLKDYVIAAANPGDVLLAVGDSVGISLPRGCQTGLCGSCTCDIEDPSF 119 The following BLAST results are available for this feature:
BLAST of EWM23547.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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