EWM23547.1, cds7126 (CDS) Nannochloropsis gaditana

Overview
NameEWM23547.1
Unique Namecds7126
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:547036..547392 -
Alignment locationCM002470.1:546608..546769 -
Alignment locationCM002470.1:546453..546482 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23547.1
Productexpressed unknown protein
Orig transcript idgnl|cribi|Naga_101203g2.3194.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:547036..547392 -
CM002470.1supercontigCM002470.1:546608..546769 -
CM002470.1supercontigCM002470.1:546453..546482 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR012675Beta-grasp_dom
IPR0010412Fe-2S_ferredoxin-type
Homology
BLAST of EWM23547.1 vs. NCBI_GenBank
Match: gi|585104663|gb|EWM23547.1| (expressed unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 370.163 bits (949), Expect = 1.292e-129
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
Query:    1 MARHRRREDRGSPSIFPSSSALLLFLSCLCDNSRAFCLYQRPAHHFTSFLLHGRQPFSSFPLASSFSPSASLPTSSLASSTSPAEPLDNVRETIQVRFINTPDGNDVVTTAQEGDNLMKVGDKAGISIPRACCTGLCGTCTSDLRDPSYTFKGEDKPAGAREGYQTIRACSTQPLARRLSSG 182
            MARHRRREDRGSPSIFPSSSALLLFLSCLCDNSRAFCLYQRPAHHFTSFLLHGRQPFSSFPLASSFSPSASLPTSSLASSTSPAEPLDNVRETIQVRFINTPDGNDVVTTAQEGDNLMKVGDKAGISIPRACCTGLCGTCTSDLRDPSYTFKGEDKPAGAREGYQTIRACSTQPLARRLSSG
Sbjct:    1 MARHRRREDRGSPSIFPSSSALLLFLSCLCDNSRAFCLYQRPAHHFTSFLLHGRQPFSSFPLASSFSPSASLPTSSLASSTSPAEPLDNVRETIQVRFINTPDGNDVVTTAQEGDNLMKVGDKAGISIPRACCTGLCGTCTSDLRDPSYTFKGEDKPAGAREGYQTIRACSTQPLARRLSSG 182          
BLAST of EWM23547.1 vs. NCBI_GenBank
Match: gi|1189383611|gb|OSX70920.1| (hypothetical protein BU14_0634s0006 [Porphyra umbilicalis])

HSP 1 Score: 88.5817 bits (218), Expect = 8.853e-18
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 0
Query:   94 IQVRFINTPDGNDVVTTAQEGDNLMKVGDKAGISIPRACCTGLCGTCTSDLRDPSYT---FKGEDKPAGAREGYQTIRACSTQ 173
            + VRFINTP G DV+  A  G+ L+ VGD  G++IPR+C +GLCG+CT +L+DPS+       +    G R G+QTIRACST+
Sbjct:  122 VAVRFINTPTGEDVLAVANPGERLLSVGDGVGLTIPRSCVSGLCGSCTCELQDPSWVPEDDDADGDGDGGRPGWQTIRACSTE 204          
BLAST of EWM23547.1 vs. NCBI_GenBank
Match: gi|545712926|ref|XP_005708767.1| (hypothetical protein Gasu_06560 [Galdieria sulphuraria] >gi|452825249|gb|EME32247.1| hypothetical protein Gasu_06560 [Galdieria sulphuraria])

HSP 1 Score: 72.0182 bits (175), Expect = 5.903e-12
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 0
Query:   94 IQVRFINTPDGNDVVTTAQEGDNLMKVGDKAGISIPRACCTGLCGTCTSDLRDPS 148
            I VRFINTP G D+V  A+  +NLM V D  G+ IPR C TG+CGTCT++L D S
Sbjct:  104 IAVRFINTPTGEDIVVAAKPSENLMDVADSVGLKIPRYCETGVCGTCTAELEDLS 158          
BLAST of EWM23547.1 vs. NCBI_GenBank
Match: gi|544214309|ref|XP_005537301.1| (hypothetical protein CYME_CMN164C [Cyanidioschyzon merolae strain 10D] >gi|449017863|dbj|BAM81265.1| hypothetical protein CYME_CMN164C [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 65.4698 bits (158), Expect = 2.359e-9
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 0
Query:   94 IQVRFINTPDGNDVVTTAQEGDNLMKVGDKAGISIPRACCTGLCGTCTSDLRDPSYTFKGEDKPAGAREGYQTIRACSTQ 173
            ++VRFINTP G ++ T A  G  ++ V D+ G+ IPR C +G+CG CT D+  PS        P     G QT+R CST+
Sbjct:  125 VKVRFINTPGGLELETMAPPGSIVLAVADELGLRIPRGCTSGVCGACTCDMVHPSL-------PG----GRQTVRVCSTK 193          
BLAST of EWM23547.1 vs. NCBI_GenBank
Match: gi|299472290|emb|CBN79703.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 60.077 bits (144), Expect = 1.934e-7
Identity = 32/79 (40.51%), Postives = 43/79 (54.43%), Query Frame = 0
Query:   94 IQVRFINTPDGNDVVTTAQEGDNLMKVGDKAGISIPRACCTGLCGTCTSDLRDPSYTFKGEDKPAGAREGYQTIRACST 172
            + VRFINT    DV T A  G+ + KV  + G+ I  AC +G+CGTC +DL D +            R G+Q +RAC T
Sbjct:   39 VGVRFINTSGDPDVCTAAYPGEIVTKVAKRCGVKIATACNSGICGTCMTDLEDAN--------GKSYRPGFQVVRACVT 109          
BLAST of EWM23547.1 vs. NCBI_GenBank
Match: gi|551677410|ref|XP_005841458.1| (hypothetical protein GUITHDRAFT_160680, partial [Guillardia theta CCMP2712] >gi|428185626|gb|EKX54478.1| hypothetical protein GUITHDRAFT_160680, partial [Guillardia theta CCMP2712])

HSP 1 Score: 60.077 bits (144), Expect = 2.505e-7
Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 0
Query:  102 PDGND-----VVTTAQEGDNLMKVGDKAGISIPRACCTGLCGTCTSDLRDPSY 149
            PD N      V+  A  GD L+ VGD  GIS+PR C TGLCG+CT D+ DPS+
Sbjct:   67 PDKNKRLKDYVIAAANPGDVLLAVGDSVGISLPRGCQTGLCGSCTCDIEDPSF 119          
The following BLAST results are available for this feature:
BLAST of EWM23547.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585104663|gb|EWM23547.1|1.292e-129100.00expressed unknown protein [Nannochloropsis gaditan... [more]
gi|1189383611|gb|OSX70920.1|8.853e-1850.60hypothetical protein BU14_0634s0006 [Porphyra umbi... [more]
gi|545712926|ref|XP_005708767.1|5.903e-1258.18hypothetical protein Gasu_06560 [Galdieria sulphur... [more]
gi|544214309|ref|XP_005537301.1|2.359e-942.50hypothetical protein CYME_CMN164C [Cyanidioschyzon... [more]
gi|299472290|emb|CBN79703.1|1.934e-740.51expressed unknown protein [Ectocarpus siliculosus][more]
gi|551677410|ref|XP_005841458.1|2.505e-752.83hypothetical protein GUITHDRAFT_160680, partial [G... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7143rna7143Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications