EWM23565.1, cds7108 (CDS) Nannochloropsis gaditana

Overview
NameEWM23565.1
Unique Namecds7108
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:505385..506287 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23565.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101424g1.10180.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:505385..506287 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM23565.1 vs. NCBI_GenBank
Match: gi|585104694|gb|EWM23565.1| (hypothetical protein Naga_101424g1 [Nannochloropsis gaditana])

HSP 1 Score: 599.742 bits (1545), Expect = 0.000e+0
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0
Query:    1 MATADGEDAKAATSPPTPVFPADNMQSTPTHPFPPSHAAALEEGVFSSPSSNVQSLLQTEARHTYDGPLCPPCAAAWTALMHACHRDTGGNHDRHPQPQEPEASEGSIGEGASVPTPVAGPFPDNRDRALHDRPSFSLSLPTITGMTLGARACLPPPSPPSRAPSLPSSSLPPAPRPPPASSPSPSKPTLLPSLHEIQEEGAWQASARHASALVLKFNCGLIGGVTQAGLFNPWDRALYLSVKYSRPFLSVANFQRPYQGFWQVGSVVGWKGGKEGGRGGGRGGGREGGVLLRPFVAAPA 300
            MATADGEDAKAATSPPTPVFPADNMQSTPTHPFPPSHAAALEEGVFSSPSSNVQSLLQTEARHTYDGPLCPPCAAAWTALMHACHRDTGGNHDRHPQPQEPEASEGSIGEGASVPTPVAGPFPDNRDRALHDRPSFSLSLPTITGMTLGARACLPPPSPPSRAPSLPSSSLPPAPRPPPASSPSPSKPTLLPSLHEIQEEGAWQASARHASALVLKFNCGLIGGVTQAGLFNPWDRALYLSVKYSRPFLSVANFQRPYQGFWQVGSVVGWKGGKEGGRGGGRGGGREGGVLLRPFVAAPA
Sbjct:    1 MATADGEDAKAATSPPTPVFPADNMQSTPTHPFPPSHAAALEEGVFSSPSSNVQSLLQTEARHTYDGPLCPPCAAAWTALMHACHRDTGGNHDRHPQPQEPEASEGSIGEGASVPTPVAGPFPDNRDRALHDRPSFSLSLPTITGMTLGARACLPPPSPPSRAPSLPSSSLPPAPRPPPASSPSPSKPTLLPSLHEIQEEGAWQASARHASALVLKFNCGLIGGVTQAGLFNPWDRALYLSVKYSRPFLSVANFQRPYQGFWQVGSVVGWKGGKEGGRGGGRGGGREGGVLLRPFVAAPA 300          
BLAST of EWM23565.1 vs. NCBI_GenBank
Match: gi|966499692|ref|WP_058516365.1| (hypothetical protein [Legionella parisiensis] >gi|962260235|gb|KTD44350.1| hypothetical protein Lpar_0436 [Legionella parisiensis] >gi|1069290487|gb|OEH45892.1| hypothetical protein lpari_03080 [Legionella parisiensis])

HSP 1 Score: 82.8037 bits (203), Expect = 1.570e-14
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 0
Query:  216 KFNC----GLIGGVTQAGLFNPWDRALYLSVKYSRPFLSVANFQRPYQGFWQ 263
            KFN     GLI GV+ +GLFNPWDRALYLSVKY+RPFLSV NF+ PYQGF Q
Sbjct:   23 KFNIDVASGLIAGVSNSGLFNPWDRALYLSVKYNRPFLSVQNFKSPYQGFSQ 74          
BLAST of EWM23565.1 vs. NCBI_GenBank
Match: gi|518063991|ref|WP_019234199.1| (hypothetical protein [Legionella anisa] >gi|962192057|gb|KTC77132.1| carrier protein [Legionella anisa] >gi|1175793364|gb|OQW26714.1| hypothetical protein A6J39_02285 [Legionella anisa])

HSP 1 Score: 81.2629 bits (199), Expect = 5.668e-14
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = 0
Query:  209 HASALVLKFNCGLIGGVTQAGLFNPWDRALYLSVKYSRPFLSVANFQRPYQGFWQ 263
            +   L +    GLI GV+ +GLFNPWDRALYLSVKY+RPFLSV NF+ PYQGF Q
Sbjct:   20 YKQKLNIDVASGLIAGVSNSGLFNPWDRALYLSVKYNRPFLSVQNFKSPYQGFSQ 74          
BLAST of EWM23565.1 vs. NCBI_GenBank
Match: gi|966436463|ref|WP_058476831.1| (hypothetical protein [Legionella steigerwaltii] >gi|962294860|gb|KTD78519.1| carrier protein [Legionella steigerwaltii])

HSP 1 Score: 80.8777 bits (198), Expect = 7.974e-14
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 0
Query:  213 LVLKFNC----GLIGGVTQAGLFNPWDRALYLSVKYSRPFLSVANFQRPYQGFWQ 263
             + KFN     GLI GV+ AG+FNPWDRALYLSVKY+RPFLS+ NF+ PYQGF Q
Sbjct:   19 FMQKFNIDVASGLIVGVSTAGIFNPWDRALYLSVKYNRPFLSIENFKDPYQGFSQ 73          
BLAST of EWM23565.1 vs. NCBI_GenBank
Match: gi|966505142|ref|WP_058521801.1| (hypothetical protein [Legionella tucsonensis] >gi|962287502|gb|KTD71230.1| carrier protein [Legionella tucsonensis])

HSP 1 Score: 80.4925 bits (197), Expect = 8.886e-14
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 0
Query:  216 KFNC----GLIGGVTQAGLFNPWDRALYLSVKYSRPFLSVANFQRPYQGFWQ 263
            KFN     GLI GV+ +G FNPWDRALYLSVKY+RPFLSV NF+ PYQGF Q
Sbjct:   23 KFNIDVASGLIAGVSNSGFFNPWDRALYLSVKYNRPFLSVQNFKSPYQGFSQ 74          
BLAST of EWM23565.1 vs. NCBI_GenBank
Match: gi|966494857|ref|WP_058511645.1| (hypothetical protein [Legionella steelei] >gi|1113345217|gb|OJW09042.1| hypothetical protein BGO44_15510 [Legionella sp. 39-23])

HSP 1 Score: 78.5666 bits (192), Expect = 4.642e-13
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 0
Query:  216 KFNC----GLIGGVTQAGLFNPWDRALYLSVKYSRPFLSVANFQRPYQGFWQ 263
            KFN     GLI GV  +G+FNPWDRALYLSVKY+RPFL+ ANF+ PYQGF Q
Sbjct:   19 KFNVDAASGLIVGVATSGIFNPWDRALYLSVKYNRPFLTAANFKSPYQGFSQ 70          
BLAST of EWM23565.1 vs. NCBI_GenBank
Match: gi|962283948|gb|KTD67714.1| (hypothetical protein Lste_0872 [Legionella steelei])

HSP 1 Score: 78.1814 bits (191), Expect = 5.766e-13
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 0
Query:  216 KFNC----GLIGGVTQAGLFNPWDRALYLSVKYSRPFLSVANFQRPYQGF 261
            KFN     GLI GV  +G+FNPWDRALYLSVKY+RPFL+ ANF+ PYQGF
Sbjct:   25 KFNVDAASGLIVGVATSGIFNPWDRALYLSVKYNRPFLTAANFKSPYQGF 74          
BLAST of EWM23565.1 vs. NCBI_GenBank
Match: gi|671586399|ref|WP_031562849.1| (hypothetical protein [Legionella wadsworthii])

HSP 1 Score: 75.8702 bits (185), Expect = 4.079e-12
Identity = 34/44 (77.27%), Postives = 36/44 (81.82%), Query Frame = 0
Query:  220 GLIGGVTQAGLFNPWDRALYLSVKYSRPFLSVANFQRPYQGFWQ 263
            GLI GV  +GLFNPWDRALYLSVKY+RPFLS  NF  PYQGF Q
Sbjct:   31 GLIAGVANSGLFNPWDRALYLSVKYNRPFLSWENFTAPYQGFSQ 74          
BLAST of EWM23565.1 vs. NCBI_GenBank
Match: gi|644964377|ref|WP_025385132.1| (hypothetical protein [Legionella oakridgensis] >gi|570284119|gb|AHE66306.1| mitochondrial carrier protein [Legionella oakridgensis ATCC 33761 = DSM 21215] >gi|570703034|gb|ETO93940.1| carrier protein [Legionella oakridgensis RV-2-2007] >gi|962253058|gb|KTD37244.1| carrier protein [Legionella oakridgensis])

HSP 1 Score: 75.8702 bits (185), Expect = 4.083e-12
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 0
Query:  219 CGLIGGVTQAGLFNPWDRALYLSVKYSRPFLSVANFQRPYQGFWQ 263
             GLI G + +GLFNPWDRALYLSVK++RPFLS+ NF+ PYQGF Q
Sbjct:   30 SGLIAGASNSGLFNPWDRALYLSVKHNRPFLSIQNFKSPYQGFSQ 74          
BLAST of EWM23565.1 vs. NCBI_GenBank
Match: gi|963702259|ref|WP_058387364.1| (hypothetical protein [Legionella cherrii] >gi|962197268|gb|KTC82312.1| carrier protein [Legionella cherrii])

HSP 1 Score: 74.7146 bits (182), Expect = 9.088e-12
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 0
Query:  216 KFNC----GLIGGVTQAGLFNPWDRALYLSVKYSRPFLSVANFQRPYQGFWQ 263
            KFN     GLI GV+ +G+FNPWDRALYLSVK++RPFLSV +F+ PYQGF Q
Sbjct:   22 KFNIDVASGLIVGVSTSGVFNPWDRALYLSVKHNRPFLSVEHFKSPYQGFSQ 73          
The following BLAST results are available for this feature:
BLAST of EWM23565.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104694|gb|EWM23565.1|0.000e+0100.00hypothetical protein Naga_101424g1 [Nannochloropsi... [more]
gi|966499692|ref|WP_058516365.1|1.570e-1473.08hypothetical protein [Legionella parisiensis] >gi|... [more]
gi|518063991|ref|WP_019234199.1|5.668e-1465.45hypothetical protein [Legionella anisa] >gi|962192... [more]
gi|966436463|ref|WP_058476831.1|7.974e-1467.27hypothetical protein [Legionella steigerwaltii] >g... [more]
gi|966505142|ref|WP_058521801.1|8.886e-1471.15hypothetical protein [Legionella tucsonensis] >gi|... [more]
gi|966494857|ref|WP_058511645.1|4.642e-1369.23hypothetical protein [Legionella steelei] >gi|1113... [more]
gi|962283948|gb|KTD67714.1|5.766e-1370.00hypothetical protein Lste_0872 [Legionella steelei... [more]
gi|671586399|ref|WP_031562849.1|4.079e-1277.27hypothetical protein [Legionella wadsworthii][more]
gi|644964377|ref|WP_025385132.1|4.083e-1271.11hypothetical protein [Legionella oakridgensis] >gi... [more]
gi|963702259|ref|WP_058387364.1|9.088e-1267.31hypothetical protein [Legionella cherrii] >gi|9621... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7125rna7125Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications