EWM23566.1, cds7107 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23566.1 vs. NCBI_GenBank
Match: gi|585104695|gb|EWM23566.1| (SNARE associated Golgi protein [Nannochloropsis gaditana]) HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0 Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0
Query: 1 MNPPRVSSPPSPPPCEETPFAHSPPRSQIDRPESIAYTPHAWCCRRRCHLQGGILVLWLVVVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLTREAGGESSVERGVKIAMYVVGAVALVAAVGVLSRFAREELRKIQDEGEGARGEGRDVEGGGEGEVKEVGRGREEKQEVEREKEAEER 330
MNPPRVSSPPSPPPCEETPFAHSPPRSQIDRPESIAYTPHAWCCRRRCHLQGGILVLWLVVVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLTREAGGESSVERGVKIAMYVVGAVALVAAVGVLSRFAREELRKIQDEGEGARGEGRDVEGGGEGEVKEVGRGREEKQEVEREKEAEER
Sbjct: 1 MNPPRVSSPPSPPPCEETPFAHSPPRSQIDRPESIAYTPHAWCCRRRCHLQGGILVLWLVVVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLTREAGGESSVERGVKIAMYVVGAVALVAAVGVLSRFAREELRKIQDEGEGARGEGRDVEGGGEGEVKEVGRGREEKQEVEREKEAEER 330
BLAST of EWM23566.1 vs. NCBI_GenBank
Match: gi|298705568|emb|CBJ28819.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 188.348 bits (477), Expect = 9.120e-54 Identity = 104/231 (45.02%), Postives = 148/231 (64.07%), Query Frame = 0
Query: 68 DYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGL---------TREAGGESSVERGVKIAMYVVGAVALVAAVGVLSRFAREELRKIQDE 289
DY+ G VA L++FLEWV +P GA+AFA VY + V F+PG+ LTLG G +FG+ALG G G + SLAV GA+ G++ AF LGR++L E AQ N++ +L+A++ ++ +GLK+V+LLRLSP+VPF+A NY+M VT V + Y +G VG +P VA+ F+GTTA GL E G +V+ V I VG +A V AV ++S +A+ L K+ +E
Sbjct: 61 DYTVPGLGFVADTLTSFLEWVEDNPGLGALAFALVYVFTTVCFIPGSLLTLGAGLVFGRALGTGLGILVGSLAVLAGATVGSILAFLLGRFVLQEQAQGLFNKFKVLKAVNRAIK-SQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFRDYAIGCVGFIPGTVAFVFIGTTASGLLGDDSEEEEESEDGNNGTVQLIVGI----VGGIATVIAVVLISIYAKRALNKVLEE 286
BLAST of EWM23566.1 vs. NCBI_GenBank
Match: gi|397619353|gb|EJK65235.1| (hypothetical protein THAOC_13931 [Thalassiosira oceanica]) HSP 1 Score: 178.718 bits (452), Expect = 1.317e-50 Identity = 107/273 (39.19%), Postives = 162/273 (59.34%), Query Frame = 0
Query: 40 HAWCCRRRC---HLQGGILVLWLVVVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHE-TAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLTREAGGESSVERGVKIAMYVVGAVALVAAVGVLSRFAREELRKIQDEGEGARGEGRDVEGGGEGEV 308
A +RR L GI +L + I++ A +S FLEW+ + + G AF VY ++ V FVPG+ LTLGGGF+FG+ALG+G G AS AVF+GAS GA+A+F LGR+LL + + +Y I+ AL ++L +G +I +LLRLSP++PF A+NY++ TS+ L Y L+G++P V Y F+G TAG LT E+G S+V V +A +VG V +A++ ++ +A++E KI + ++G V+G + V
Sbjct: 21 QAQTKKRRVPFVKLSVGITLLAFIAFIIV----DSATDNRAGATVSAFLEWIESNVIAGVFAFMGVYFVATVLFVPGSVLTLGGGFVFGKALGLGRGVALASSAVFIGASLGAIASFLLGRYLLRDWVTERLFKKYKIMTALGSALE-EKGFQIAILLRLSPIIPFNAINYILGATSMRLVHYIFSLLGILPGTVLYCFIGATAGSLT-ESG--SAVSGPVAVASLIVGIVFGLASLFLVGYYAKKEFDKIVPQQAQSQGTSEQVQGDTDDMV 285
BLAST of EWM23566.1 vs. NCBI_GenBank
Match: gi|219118318|ref|XP_002179936.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408989|gb|EEC48922.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 164.851 bits (416), Expect = 6.449e-45 Identity = 96/256 (37.50%), Postives = 144/256 (56.25%), Query Frame = 0
Query: 39 PHAWCCRRRCHLQGGILVLWLVVVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALG-VGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLTREAGGESSVERGVKIAMYVVGAVALVAAVGVLSRFAREELRKI-QDEGEG 292
PH R C + +++ ++L V + + + R ++F W+ HP G +A VY + + FVPG+ LT+G GF F A G G +SLAVFVGAS G+V +F LGR+L E + Y I RA+D +L + GLKI++LLRLSPL+P+ AL+Y+ VTS+SL +Y++ LVG++P + + +G TA L G + S G+++ V G + GV S +++ EL I QDE EG
Sbjct: 32 PHQHTRLRSC-------IFFVMGILLALVVFDSMKEKRIERTAASFFTWIESHPFLGVLAVILVYTAATICFVPGSVLTIGTGFAFRSAFDDFGKGLALSSLAVFVGASCGSVCSFLLGRYLFREWVVRLASSYPIFRAIDRALE-NNGLKIMVLLRLSPLIPYNALDYISGVTSISLFSYSVALVGLLPGTITFCAIGATASSLAE--GTDRSENGGLRVFALVFGLIFAFLGAGVASFYSKIELDMILQDESEG 277
BLAST of EWM23566.1 vs. NCBI_GenBank
Match: gi|219129885|ref|XP_002185108.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403287|gb|EEC43240.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 162.54 bits (410), Expect = 4.887e-44 Identity = 98/284 (34.51%), Postives = 156/284 (54.93%), Query Frame = 0
Query: 27 SQIDRPESIAYTPHAWCCRRRCHLQGGILVLWLVVVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLTREAGGESSVERGVKIAMYVVGAVALVAAVGVLSRFAREELRKIQDEGEGARGEGRDVEGGGEGEVKE 310
++ D P++ +P R L G+L+L V +++ +R+V + +FL+W+ + + G F VY + + F+PG+ LTLG GF+F + G+G G V AVF+GAS GA A+F +GR+LL + A +Y + ALD +L GLKI++LLRLSP+VPF A+NY+ VT+VS++ Y L L ++P Y FLG +A + S + V I + V+G V A+ + +R+AR+EL ++ E R E E E +++
Sbjct: 4 TENDGPKAARDSPRG---RTTIKLVIGLLLLGFVAFVIL----DSLTNRYVRDGIDSFLDWIEENSVEGIFLFVLVYFAATILFIPGSILTLGAGFVFASSFGLGLGLVIGVFAVFLGASLGATASFFIGRYLLRDQATKLTKKYAVFEALDVALQ-ENGLKILVLLRLSPIVPFNAINYICGVTAVSIRDYILALFAILPGTTLYVFLGASA--GSLSDSASSGDDSTVTITVVVLGIVLGFIAIWISARYARKELNRVL---EQRRAESEQSEETAESNIEQ 274
BLAST of EWM23566.1 vs. NCBI_GenBank
Match: gi|298715828|emb|CBJ28293.1| (Hypothetical UPF0043 protein slr0305 [Ectocarpus siliculosus]) HSP 1 Score: 157.147 bits (396), Expect = 2.704e-42 Identity = 79/191 (41.36%), Postives = 123/191 (64.40%), Query Frame = 0
Query: 55 LVLWLVVVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLTRE 245
+++++VV ++++ A H +V L T +W+ +P G + FA ++ LS + FVPG LT+G G FG+ALG G G ++ S+AV +GA V AF LGR++LHE AQS RY IL A++ ++ G+K+++LLRLSPLVPF+ N++ +T VSL+ Y LG VG+VP +A+ ++G + G E
Sbjct: 67 IMMFVVVALVVSAIVDIACHDNVRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIE-RNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNE 256
BLAST of EWM23566.1 vs. NCBI_GenBank
Match: gi|397625974|gb|EJK67984.1| (hypothetical protein THAOC_10891 [Thalassiosira oceanica]) HSP 1 Score: 155.992 bits (393), Expect = 4.013e-42 Identity = 87/178 (48.88%), Postives = 116/178 (65.17%), Query Frame = 0
Query: 59 LVVVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLG 236
L V+ L+ D S +GH V + FL+WV H G +AF VYA++ VFFVPGA LTLGGG++FG A G+G G + ASLAVF GAS GA+A+F LGR+LL + A +RY I++ALDA++ G KI +LLRLS VPF ALNY+ T++ L Y + L+GM + + LG
Sbjct: 62 LSVLALVVADASTSGH--VQAITRRFLDWVQNHVYVGILAFVLVYAIATVFFVPGAVLTLGGGYVFGSAFGLGKGVLVASLAVFAGASGGAIASFLLGRYLLRDYASGLADRYPIMKALDAAI-GRNSFKIFVLLRLSVNVPFNALNYISGATAIGLGVYCVTLLGMCLVLCCTASLG 236
BLAST of EWM23566.1 vs. NCBI_GenBank
Match: gi|1072237104|gb|OEU21831.1| (SNARE_assoc-domain-containing protein, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 153.295 bits (386), Expect = 2.564e-41 Identity = 88/239 (36.82%), Postives = 141/239 (59.00%), Query Frame = 0
Query: 59 LVVVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQAL--GVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLT----REAGGESSVERGVKIAMYVVGAVALVAAVGVLSRFAREELRKIQDEGE 291
L++V + VD S G +++ ++ FLEW+ +P G +AF VY ++ V VPGA LT G GF+F + + G V ++AVF+GA A A+ AF LGR+L H++ + RYT+ ALD +L +GL+I+ LLRLSP+ PF LNY+ V++V +Y L ++P + Y FLG +AG LT + +S+ + V I + V+G + + A+ + S +A++EL K+ +
Sbjct: 3 LILVCFVIVD-STFGQKYIRHGITIFLEWIKENPGEGVIAFIFVYFIATVLCVPGALLTFGSGFVFSASFDGSIFWGVVLGTVAVFIGAFASAIVAFLLGRYLFHDSVRRLSTRYTLFEALDIAL-AEKGLRIMCLLRLSPITPFVVLNYIAGVSTVRFGSYCLSNFAILPGTIFYVFLGASAGSLTDSVNNNSDNDSNDNKAVTITVVVLGVIFGLLAIALTSYYAKKELNKMVTNQQ 239
BLAST of EWM23566.1 vs. NCBI_GenBank
Match: gi|1072228439|gb|OEU13175.1| (SNARE_assoc-domain-containing protein, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 145.206 bits (365), Expect = 5.327e-39 Identity = 69/168 (41.07%), Postives = 110/168 (65.48%), Query Frame = 0
Query: 84 FLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALG-VGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTL-NRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLTREAGGE 249
FL WV ++P+ G +AF VY + +FF+PG+ LTLG GF+F + + G + ++A F+GAS GA+ +F LGR+L E+ + L +Y + A+D +L+ +GL+I++LLRLSP++PF LNY+ +T + L Y + +GM+P + Y FLG++AG L+ G E
Sbjct: 8 FLNWVEQNPIYGVLAFVLVYVVCTIFFIPGSILTLGAGFVFTASTSSLWTGVLLGTIATFIGASIGAILSFLLGRYLFRESISTKLITKYPVFTAIDTALN-EKGLRIMILLRLSPIIPFNVLNYVSGITGIKLFDYCIACIGMLPGTILYVFLGSSAGSLSEIGGNE 174
BLAST of EWM23566.1 vs. NCBI_GenBank
Match: gi|873233189|emb|CEM03564.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 148.288 bits (373), Expect = 2.706e-38 Identity = 91/235 (38.72%), Postives = 133/235 (56.60%), Query Frame = 0
Query: 70 SPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTT---AGGLTREAGGESSVERGVKIAMYVVGAVALVAAVGVLSRFAREELRKI--QDEGEGARGEGRD 299
S G R VA L F EWV +P G +A+ AVY + V F+PG+ LTLG GF F A G GPG AV VGA GA AF GR+L Q +++ ++RA+D +GLK+ +LLRLSP+VPF+A NY+M T + Y +G +G++P Y ++G AG + +A G + V +A VG VA AV +++ FAR+ LR+I ++ E ++ +G++
Sbjct: 73 STTGQR-VAEGLDIFKEWVQDNPATGILAYMAVYMVCTVAFIPGSILTLGAGFTFVCAFGNGPGMAAGIGAVLVGAFVGAQLAFFCGRFLFKSWVQGLTDKFKVMRAIDKVFE-TQGLKLNILLRLSPVVPFSAFNYIMGGTRTRYRDYAIGTLGIIPGTALYVYIGAIPAFAGACSGKAEGSGHWSQWVFLA---VGLVATFIAVFIVTWFARKALREITEKEAAEASKADGKE 302 The following BLAST results are available for this feature:
BLAST of EWM23566.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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