EWM23566.1, cds7107 (CDS) Nannochloropsis gaditana

Overview
NameEWM23566.1
Unique Namecds7107
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:503827..504819 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23566.1
ProductSNARE associated Golgi protein
Orig transcript idgnl|cribi|Naga_101424g2.10181.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:503827..504819 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR015414Tvp38/TMEM64-like
Homology
BLAST of EWM23566.1 vs. NCBI_GenBank
Match: gi|585104695|gb|EWM23566.1| (SNARE associated Golgi protein [Nannochloropsis gaditana])

HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0
Query:    1 MNPPRVSSPPSPPPCEETPFAHSPPRSQIDRPESIAYTPHAWCCRRRCHLQGGILVLWLVVVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLTREAGGESSVERGVKIAMYVVGAVALVAAVGVLSRFAREELRKIQDEGEGARGEGRDVEGGGEGEVKEVGRGREEKQEVEREKEAEER 330
            MNPPRVSSPPSPPPCEETPFAHSPPRSQIDRPESIAYTPHAWCCRRRCHLQGGILVLWLVVVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLTREAGGESSVERGVKIAMYVVGAVALVAAVGVLSRFAREELRKIQDEGEGARGEGRDVEGGGEGEVKEVGRGREEKQEVEREKEAEER
Sbjct:    1 MNPPRVSSPPSPPPCEETPFAHSPPRSQIDRPESIAYTPHAWCCRRRCHLQGGILVLWLVVVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLTREAGGESSVERGVKIAMYVVGAVALVAAVGVLSRFAREELRKIQDEGEGARGEGRDVEGGGEGEVKEVGRGREEKQEVEREKEAEER 330          
BLAST of EWM23566.1 vs. NCBI_GenBank
Match: gi|298705568|emb|CBJ28819.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 188.348 bits (477), Expect = 9.120e-54
Identity = 104/231 (45.02%), Postives = 148/231 (64.07%), Query Frame = 0
Query:   68 DYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGL---------TREAGGESSVERGVKIAMYVVGAVALVAAVGVLSRFAREELRKIQDE 289
            DY+  G   VA  L++FLEWV  +P  GA+AFA VY  + V F+PG+ LTLG G +FG+ALG G G +  SLAV  GA+ G++ AF LGR++L E AQ   N++ +L+A++ ++   +GLK+V+LLRLSP+VPF+A NY+M VT V  + Y +G VG +P  VA+ F+GTTA GL           E G   +V+  V I    VG +A V AV ++S +A+  L K+ +E
Sbjct:   61 DYTVPGLGFVADTLTSFLEWVEDNPGLGALAFALVYVFTTVCFIPGSLLTLGAGLVFGRALGTGLGILVGSLAVLAGATVGSILAFLLGRFVLQEQAQGLFNKFKVLKAVNRAIK-SQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFRDYAIGCVGFIPGTVAFVFIGTTASGLLGDDSEEEEESEDGNNGTVQLIVGI----VGGIATVIAVVLISIYAKRALNKVLEE 286          
BLAST of EWM23566.1 vs. NCBI_GenBank
Match: gi|397619353|gb|EJK65235.1| (hypothetical protein THAOC_13931 [Thalassiosira oceanica])

HSP 1 Score: 178.718 bits (452), Expect = 1.317e-50
Identity = 107/273 (39.19%), Postives = 162/273 (59.34%), Query Frame = 0
Query:   40 HAWCCRRRC---HLQGGILVLWLVVVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHE-TAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLTREAGGESSVERGVKIAMYVVGAVALVAAVGVLSRFAREELRKIQDEGEGARGEGRDVEGGGEGEV 308
             A   +RR     L  GI +L  +  I++      A        +S FLEW+  + + G  AF  VY ++ V FVPG+ LTLGGGF+FG+ALG+G G   AS AVF+GAS GA+A+F LGR+LL +   +    +Y I+ AL ++L   +G +I +LLRLSP++PF A+NY++  TS+ L  Y   L+G++P  V Y F+G TAG LT E+G  S+V   V +A  +VG V  +A++ ++  +A++E  KI  +   ++G    V+G  +  V
Sbjct:   21 QAQTKKRRVPFVKLSVGITLLAFIAFIIV----DSATDNRAGATVSAFLEWIESNVIAGVFAFMGVYFVATVLFVPGSVLTLGGGFVFGKALGLGRGVALASSAVFIGASLGAIASFLLGRYLLRDWVTERLFKKYKIMTALGSALE-EKGFQIAILLRLSPIIPFNAINYILGATSMRLVHYIFSLLGILPGTVLYCFIGATAGSLT-ESG--SAVSGPVAVASLIVGIVFGLASLFLVGYYAKKEFDKIVPQQAQSQGTSEQVQGDTDDMV 285          
BLAST of EWM23566.1 vs. NCBI_GenBank
Match: gi|219118318|ref|XP_002179936.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408989|gb|EEC48922.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 164.851 bits (416), Expect = 6.449e-45
Identity = 96/256 (37.50%), Postives = 144/256 (56.25%), Query Frame = 0
Query:   39 PHAWCCRRRCHLQGGILVLWLVVVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALG-VGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLTREAGGESSVERGVKIAMYVVGAVALVAAVGVLSRFAREELRKI-QDEGEG 292
            PH     R C       + +++ ++L  V +     + + R  ++F  W+  HP  G +A   VY  + + FVPG+ LT+G GF F  A    G G   +SLAVFVGAS G+V +F LGR+L  E      + Y I RA+D +L  + GLKI++LLRLSPL+P+ AL+Y+  VTS+SL +Y++ LVG++P  + +  +G TA  L    G + S   G+++   V G +      GV S +++ EL  I QDE EG
Sbjct:   32 PHQHTRLRSC-------IFFVMGILLALVVFDSMKEKRIERTAASFFTWIESHPFLGVLAVILVYTAATICFVPGSVLTIGTGFAFRSAFDDFGKGLALSSLAVFVGASCGSVCSFLLGRYLFREWVVRLASSYPIFRAIDRALE-NNGLKIMVLLRLSPLIPYNALDYISGVTSISLFSYSVALVGLLPGTITFCAIGATASSLAE--GTDRSENGGLRVFALVFGLIFAFLGAGVASFYSKIELDMILQDESEG 277          
BLAST of EWM23566.1 vs. NCBI_GenBank
Match: gi|219129885|ref|XP_002185108.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403287|gb|EEC43240.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 162.54 bits (410), Expect = 4.887e-44
Identity = 98/284 (34.51%), Postives = 156/284 (54.93%), Query Frame = 0
Query:   27 SQIDRPESIAYTPHAWCCRRRCHLQGGILVLWLVVVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLTREAGGESSVERGVKIAMYVVGAVALVAAVGVLSRFAREELRKIQDEGEGARGEGRDVEGGGEGEVKE 310
            ++ D P++   +P     R    L  G+L+L  V  +++        +R+V   + +FL+W+  + + G   F  VY  + + F+PG+ LTLG GF+F  + G+G G V    AVF+GAS GA A+F +GR+LL + A     +Y +  ALD +L    GLKI++LLRLSP+VPF A+NY+  VT+VS++ Y L L  ++P    Y FLG +A   +      S  +  V I + V+G V    A+ + +R+AR+EL ++    E  R E    E   E  +++
Sbjct:    4 TENDGPKAARDSPRG---RTTIKLVIGLLLLGFVAFVIL----DSLTNRYVRDGIDSFLDWIEENSVEGIFLFVLVYFAATILFIPGSILTLGAGFVFASSFGLGLGLVIGVFAVFLGASLGATASFFIGRYLLRDQATKLTKKYAVFEALDVALQ-ENGLKILVLLRLSPIVPFNAINYICGVTAVSIRDYILALFAILPGTTLYVFLGASA--GSLSDSASSGDDSTVTITVVVLGIVLGFIAIWISARYARKELNRVL---EQRRAESEQSEETAESNIEQ 274          
BLAST of EWM23566.1 vs. NCBI_GenBank
Match: gi|298715828|emb|CBJ28293.1| (Hypothetical UPF0043 protein slr0305 [Ectocarpus siliculosus])

HSP 1 Score: 157.147 bits (396), Expect = 2.704e-42
Identity = 79/191 (41.36%), Postives = 123/191 (64.40%), Query Frame = 0
Query:   55 LVLWLVVVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLTRE 245
            +++++VV ++++     A H +V   L T  +W+  +P  G + FA ++ LS + FVPG  LT+G G  FG+ALG G G ++ S+AV +GA    V AF LGR++LHE AQS   RY IL A++ ++    G+K+++LLRLSPLVPF+  N++  +T VSL+ Y LG VG+VP  +A+ ++G +  G   E
Sbjct:   67 IMMFVVVALVVSAIVDIACHDNVRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIE-RNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNE 256          
BLAST of EWM23566.1 vs. NCBI_GenBank
Match: gi|397625974|gb|EJK67984.1| (hypothetical protein THAOC_10891 [Thalassiosira oceanica])

HSP 1 Score: 155.992 bits (393), Expect = 4.013e-42
Identity = 87/178 (48.88%), Postives = 116/178 (65.17%), Query Frame = 0
Query:   59 LVVVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLG 236
            L V+ L+  D S +GH  V  +   FL+WV  H   G +AF  VYA++ VFFVPGA LTLGGG++FG A G+G G + ASLAVF GAS GA+A+F LGR+LL + A    +RY I++ALDA++ G    KI +LLRLS  VPF ALNY+   T++ L  Y + L+GM   +   + LG
Sbjct:   62 LSVLALVVADASTSGH--VQAITRRFLDWVQNHVYVGILAFVLVYAIATVFFVPGAVLTLGGGYVFGSAFGLGKGVLVASLAVFAGASGGAIASFLLGRYLLRDYASGLADRYPIMKALDAAI-GRNSFKIFVLLRLSVNVPFNALNYISGATAIGLGVYCVTLLGMCLVLCCTASLG 236          
BLAST of EWM23566.1 vs. NCBI_GenBank
Match: gi|1072237104|gb|OEU21831.1| (SNARE_assoc-domain-containing protein, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 153.295 bits (386), Expect = 2.564e-41
Identity = 88/239 (36.82%), Postives = 141/239 (59.00%), Query Frame = 0
Query:   59 LVVVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQAL--GVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLT----REAGGESSVERGVKIAMYVVGAVALVAAVGVLSRFAREELRKIQDEGE 291
            L++V  + VD S  G +++   ++ FLEW+  +P  G +AF  VY ++ V  VPGA LT G GF+F  +    +  G V  ++AVF+GA A A+ AF LGR+L H++ +    RYT+  ALD +L   +GL+I+ LLRLSP+ PF  LNY+  V++V   +Y L    ++P  + Y FLG +AG LT      +  +S+  + V I + V+G +  + A+ + S +A++EL K+    +
Sbjct:    3 LILVCFVIVD-STFGQKYIRHGITIFLEWIKENPGEGVIAFIFVYFIATVLCVPGALLTFGSGFVFSASFDGSIFWGVVLGTVAVFIGAFASAIVAFLLGRYLFHDSVRRLSTRYTLFEALDIAL-AEKGLRIMCLLRLSPITPFVVLNYIAGVSTVRFGSYCLSNFAILPGTIFYVFLGASAGSLTDSVNNNSDNDSNDNKAVTITVVVLGVIFGLLAIALTSYYAKKELNKMVTNQQ 239          
BLAST of EWM23566.1 vs. NCBI_GenBank
Match: gi|1072228439|gb|OEU13175.1| (SNARE_assoc-domain-containing protein, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 145.206 bits (365), Expect = 5.327e-39
Identity = 69/168 (41.07%), Postives = 110/168 (65.48%), Query Frame = 0
Query:   84 FLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALG-VGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTL-NRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLTREAGGE 249
            FL WV ++P+ G +AF  VY +  +FF+PG+ LTLG GF+F  +   +  G +  ++A F+GAS GA+ +F LGR+L  E+  + L  +Y +  A+D +L+  +GL+I++LLRLSP++PF  LNY+  +T + L  Y +  +GM+P  + Y FLG++AG L+   G E
Sbjct:    8 FLNWVEQNPIYGVLAFVLVYVVCTIFFIPGSILTLGAGFVFTASTSSLWTGVLLGTIATFIGASIGAILSFLLGRYLFRESISTKLITKYPVFTAIDTALN-EKGLRIMILLRLSPIIPFNVLNYVSGITGIKLFDYCIACIGMLPGTILYVFLGSSAGSLSEIGGNE 174          
BLAST of EWM23566.1 vs. NCBI_GenBank
Match: gi|873233189|emb|CEM03564.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 148.288 bits (373), Expect = 2.706e-38
Identity = 91/235 (38.72%), Postives = 133/235 (56.60%), Query Frame = 0
Query:   70 SPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTT---AGGLTREAGGESSVERGVKIAMYVVGAVALVAAVGVLSRFAREELRKI--QDEGEGARGEGRD 299
            S  G R VA  L  F EWV  +P  G +A+ AVY +  V F+PG+ LTLG GF F  A G GPG      AV VGA  GA  AF  GR+L     Q   +++ ++RA+D      +GLK+ +LLRLSP+VPF+A NY+M  T    + Y +G +G++P    Y ++G     AG  + +A G     + V +A   VG VA   AV +++ FAR+ LR+I  ++  E ++ +G++
Sbjct:   73 STTGQR-VAEGLDIFKEWVQDNPATGILAYMAVYMVCTVAFIPGSILTLGAGFTFVCAFGNGPGMAAGIGAVLVGAFVGAQLAFFCGRFLFKSWVQGLTDKFKVMRAIDKVFE-TQGLKLNILLRLSPVVPFSAFNYIMGGTRTRYRDYAIGTLGIIPGTALYVYIGAIPAFAGACSGKAEGSGHWSQWVFLA---VGLVATFIAVFIVTWFARKALREITEKEAAEASKADGKE 302          
The following BLAST results are available for this feature:
BLAST of EWM23566.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104695|gb|EWM23566.1|0.000e+0100.00SNARE associated Golgi protein [Nannochloropsis ga... [more]
gi|298705568|emb|CBJ28819.1|9.120e-5445.02conserved unknown protein [Ectocarpus siliculosus][more]
gi|397619353|gb|EJK65235.1|1.317e-5039.19hypothetical protein THAOC_13931 [Thalassiosira oc... [more]
gi|219118318|ref|XP_002179936.1|6.449e-4537.50predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|219129885|ref|XP_002185108.1|4.887e-4434.51predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|298715828|emb|CBJ28293.1|2.704e-4241.36Hypothetical UPF0043 protein slr0305 [Ectocarpus s... [more]
gi|397625974|gb|EJK67984.1|4.013e-4248.88hypothetical protein THAOC_10891 [Thalassiosira oc... [more]
gi|1072237104|gb|OEU21831.1|2.564e-4136.82SNARE_assoc-domain-containing protein, partial [Fr... [more]
gi|1072228439|gb|OEU13175.1|5.327e-3941.07SNARE_assoc-domain-containing protein, partial [Fr... [more]
gi|873233189|emb|CEM03564.1|2.706e-3838.72unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7124rna7124Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications