EWM23576.1, cds7094 (CDS) Nannochloropsis gaditana

Overview
NameEWM23576.1
Unique Namecds7094
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:477645..478776 -

Link to JBrowse

Properties
Property NameValue
Start range477645
Start range.
Protein idEWM23576.1
Productla-related protein 4b
Partialtrue
Orig transcript idgnl|cribi|Naga_100610g1.2613.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:477645..478776 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR012677Nucleotide-bd_a/b_plait
IPR006630Lupus_La_RNA-bd
Homology
BLAST of EWM23576.1 vs. NCBI_GenBank
Match: gi|585104712|gb|EWM23576.1| (la-related protein 4b, partial [Nannochloropsis gaditana])

HSP 1 Score: 756.133 bits (1951), Expect = 0.000e+0
Identity = 377/377 (100.00%), Postives = 377/377 (100.00%), Query Frame = 0
Query:    1 MSVEAAAILEKKTQDSAAPATSASSPDMSPNRDKDNAAGGTEHDERSGSENGEGLEAVGGEGPAIQVSEGTPGVKKGLGEVAPITNGFHGGSTATTTVNGAVEGEAKPGAASRLPSAAGTHEGDVRAVRQALEHYLSLAYLRADQGFLASYMNPQMFIPLSVLVTLPALAALSPSLSLVVAALKDHPTLTLNEEQSSVRPNIHVPRTTVILREISSETPEEEIRSQLLGWEGCPEIKSLRKDVGDTWFVGLEDEGAAKWILERLRERLWHGKPIRARLKSENVVNKAFLAGEGVGTDGGDEGGRYARQGGDPTPTPPGRKGGKGGGGGGGGGLMNGSVAHPYHADQYQATPQAHLPPLPSQDLDRGGPYPPALRGPP 377
            MSVEAAAILEKKTQDSAAPATSASSPDMSPNRDKDNAAGGTEHDERSGSENGEGLEAVGGEGPAIQVSEGTPGVKKGLGEVAPITNGFHGGSTATTTVNGAVEGEAKPGAASRLPSAAGTHEGDVRAVRQALEHYLSLAYLRADQGFLASYMNPQMFIPLSVLVTLPALAALSPSLSLVVAALKDHPTLTLNEEQSSVRPNIHVPRTTVILREISSETPEEEIRSQLLGWEGCPEIKSLRKDVGDTWFVGLEDEGAAKWILERLRERLWHGKPIRARLKSENVVNKAFLAGEGVGTDGGDEGGRYARQGGDPTPTPPGRKGGKGGGGGGGGGLMNGSVAHPYHADQYQATPQAHLPPLPSQDLDRGGPYPPALRGPP
Sbjct:    1 MSVEAAAILEKKTQDSAAPATSASSPDMSPNRDKDNAAGGTEHDERSGSENGEGLEAVGGEGPAIQVSEGTPGVKKGLGEVAPITNGFHGGSTATTTVNGAVEGEAKPGAASRLPSAAGTHEGDVRAVRQALEHYLSLAYLRADQGFLASYMNPQMFIPLSVLVTLPALAALSPSLSLVVAALKDHPTLTLNEEQSSVRPNIHVPRTTVILREISSETPEEEIRSQLLGWEGCPEIKSLRKDVGDTWFVGLEDEGAAKWILERLRERLWHGKPIRARLKSENVVNKAFLAGEGVGTDGGDEGGRYARQGGDPTPTPPGRKGGKGGGGGGGGGLMNGSVAHPYHADQYQATPQAHLPPLPSQDLDRGGPYPPALRGPP 377          
BLAST of EWM23576.1 vs. NCBI_GenBank
Match: gi|970660433|gb|KUF97983.1| (Ammonium Transporter (Amt) Family [Phytophthora nicotianae])

HSP 1 Score: 139.813 bits (351), Expect = 1.825e-34
Identity = 68/163 (41.72%), Postives = 104/163 (63.80%), Query Frame = 0
Query:  127 AVRQALEHYLSLAYLRADQGFLASYMNPQMFIPLSVLVTLPALAALSPSLSLVVAALKDHPTLTLNEEQSSVRPNIHVPRTTVILREISSETPEEEIRSQLLGWEGCPEIKSLRKDVGDTWFVGLEDEGAAKWILERLRERLWHGKPIRARLKSENVVNKAFL 289
            A+++ +E Y S A L A+  +L S MN QM++P+ V++    +  L+   +L+V A++D    +LN  + +++PNI   RTT+ILREI S T  EE+ +    +EGC ++ S+R DVGDTWFV +  E  A   L  LR + ++G PI+ARLKSENV+ K+F 
Sbjct:   17 AIKRQVEFYFSRANL-ANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDDKALLVDAVQDSTVCSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEVGAI---FEGCGKVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAPIKARLKSENVL-KSFY 174          
BLAST of EWM23576.1 vs. NCBI_GenBank
Match: gi|301093766|ref|XP_002997728.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262109977|gb|EEY68029.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 140.584 bits (353), Expect = 2.213e-33
Identity = 67/163 (41.10%), Postives = 105/163 (64.42%), Query Frame = 0
Query:  127 AVRQALEHYLSLAYLRADQGFLASYMNPQMFIPLSVLVTLPALAALSPSLSLVVAALKDHPTLTLNEEQSSVRPNIHVPRTTVILREISSETPEEEIRSQLLGWEGCPEIKSLRKDVGDTWFVGLEDEGAAKWILERLRERLWHGKPIRARLKSENVVNKAFL 289
            A+++ +E Y S A L A+  +L S MN QM++P+ V++    +  L+ + +L+V A+++    +LN  + +++PNI   RTT+ILREISS T  EE+ +    +EGC ++ S+R DVGDTWFV +  E  A   L  LR + ++G  I+ARLKSENV+ K+F 
Sbjct:   17 AIKRQVEFYFSRANL-ANDAYLVSQMNSQMYVPVEVIINFSKITQLTDNTALLVEAVQESTVCSLNSSKDAIKPNIKSERTTIILREISSSTKPEEVEAI---FEGCGKVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAAIKARLKSENVL-KSFY 174          
BLAST of EWM23576.1 vs. NCBI_GenBank
Match: gi|675196723|ref|XP_008907246.1| (hypothetical protein PPTG_13373 [Phytophthora parasitica INRA-310] >gi|566021049|gb|ETI43960.1| hypothetical protein F443_11248 [Phytophthora parasitica P1569] >gi|567958423|gb|ETK84012.1| hypothetical protein L915_10962 [Phytophthora parasitica] >gi|567987109|gb|ETL37421.1| hypothetical protein L916_10859 [Phytophthora parasitica] >gi|568016407|gb|ETL90584.1| hypothetical protein L917_10765 [Phytophthora parasitica] >gi|568046783|gb|ETM43888.1| hypothetical protein L914_10800 [Phytophthora parasitica] >gi|568092684|gb|ETN07489.1| hypothetical protein PPTG_13373 [Phytophthora parasitica INRA-310] >gi|570324698|gb|ETO72646.1| hypothetical protein F444_11307 [Phytophthora parasitica P1976] >gi|570948514|gb|ETP13771.1| hypothetical protein F441_11163 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 139.043 bits (349), Expect = 1.226e-32
Identity = 68/163 (41.72%), Postives = 104/163 (63.80%), Query Frame = 0
Query:  127 AVRQALEHYLSLAYLRADQGFLASYMNPQMFIPLSVLVTLPALAALSPSLSLVVAALKDHPTLTLNEEQSSVRPNIHVPRTTVILREISSETPEEEIRSQLLGWEGCPEIKSLRKDVGDTWFVGLEDEGAAKWILERLRERLWHGKPIRARLKSENVVNKAFL 289
            A+++ +E Y S A L A+  +L S MN QM++P+ V++    +  L+   +L+V A++D    +LN  + +++PNI   RTT+ILREI S T  EE+ +    +EGC ++ S+R DVGDTWFV +  E  A   L  LR + ++G PI+ARLKSENV+ K+F 
Sbjct:   76 AIKRQVEFYFSRANL-ANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDDKALLVDAVQDSTVCSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEVGAI---FEGCGKVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAPIKARLKSENVL-KSFY 233          
BLAST of EWM23576.1 vs. NCBI_GenBank
Match: gi|570981428|gb|ETP41839.1| (hypothetical protein F442_11155 [Phytophthora parasitica P10297])

HSP 1 Score: 139.043 bits (349), Expect = 1.275e-32
Identity = 68/163 (41.72%), Postives = 104/163 (63.80%), Query Frame = 0
Query:  127 AVRQALEHYLSLAYLRADQGFLASYMNPQMFIPLSVLVTLPALAALSPSLSLVVAALKDHPTLTLNEEQSSVRPNIHVPRTTVILREISSETPEEEIRSQLLGWEGCPEIKSLRKDVGDTWFVGLEDEGAAKWILERLRERLWHGKPIRARLKSENVVNKAFL 289
            A+++ +E Y S A L A+  +L S MN QM++P+ V++    +  L+   +L+V A++D    +LN  + +++PNI   RTT+ILREI S T  EE+ +    +EGC ++ S+R DVGDTWFV +  E  A   L  LR + ++G PI+ARLKSENV+ K+F 
Sbjct:   76 AIKRQVEFYFSRANL-ANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDDKALLVDAVQDSTVCSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEVGAI---FEGCGKVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAPIKARLKSENVL-KSFY 233          
BLAST of EWM23576.1 vs. NCBI_GenBank
Match: gi|970633468|gb|KUF79126.1| (La-related protein 4 [Phytophthora nicotianae])

HSP 1 Score: 137.887 bits (346), Expect = 6.221e-32
Identity = 68/163 (41.72%), Postives = 104/163 (63.80%), Query Frame = 0
Query:  127 AVRQALEHYLSLAYLRADQGFLASYMNPQMFIPLSVLVTLPALAALSPSLSLVVAALKDHPTLTLNEEQSSVRPNIHVPRTTVILREISSETPEEEIRSQLLGWEGCPEIKSLRKDVGDTWFVGLEDEGAAKWILERLRERLWHGKPIRARLKSENVVNKAFL 289
            A+++ +E Y S A L A+  +L S MN QM++P+ V++    +  L+   +L+V A++D    +LN  + +++PNI   RTT+ILREI S T  EE+ +    +EGC ++ S+R DVGDTWFV +  E  A   L  LR + ++G PI+ARLKSENV+ K+F 
Sbjct:  272 AIKRQVEFYFSRANL-ANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDDKALLVDAVQDSTVCSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEVGAI---FEGCGKVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAPIKARLKSENVL-KSFY 429          
BLAST of EWM23576.1 vs. NCBI_GenBank
Match: gi|695373127|ref|XP_009514974.1| (hypothetical protein PHYSODRAFT_554114 [Phytophthora sojae] >gi|348687885|gb|EGZ27699.1| hypothetical protein PHYSODRAFT_554114 [Phytophthora sojae])

HSP 1 Score: 135.576 bits (340), Expect = 1.747e-31
Identity = 66/163 (40.49%), Postives = 103/163 (63.19%), Query Frame = 0
Query:  127 AVRQALEHYLSLAYLRADQGFLASYMNPQMFIPLSVLVTLPALAALSPSLSLVVAALKDHPTLTLNEEQSSVRPNIHVPRTTVILREISSETPEEEIRSQLLGWEGCPEIKSLRKDVGDTWFVGLEDEGAAKWILERLRERLWHGKPIRARLKSENVVNKAFL 289
            A+++ +E Y S A L A+  +L S MN QM++P+ V++    +  L+   +L+V A++D    +LN  + +++PNI   RTT+ILREI S T  EE+ +    ++GC ++ S+R DVGDTWFV +  E  A   L  LR + ++G  I+ARLKSENV+ K+F 
Sbjct:   33 AIKRQVEFYFSRANL-ANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDDAALLVEAVQDSTICSLNSAKDAIKPNIKSERTTIILREIPSSTKPEEVEAI---FDGCGKVASVRSDVGDTWFVTMNTEAEAVSTLLALRSKTFNGAAIKARLKSENVL-KSFY 190          
BLAST of EWM23576.1 vs. NCBI_GenBank
Match: gi|1173945774|gb|OQR94367.1| (hypothetical protein ACHHYP_01407 [Achlya hypogyna])

HSP 1 Score: 133.65 bits (335), Expect = 2.416e-31
Identity = 67/162 (41.36%), Postives = 99/162 (61.11%), Query Frame = 0
Query:  127 AVRQALEHYLSLAYLRADQGFLASYMNPQMFIPLSVLVTLPALAALSPSLSLVVAALKDHPTLTLNEEQSSVRPNIHVPRTTVILREISSETPEEEIRSQLLGWEGCPEIKSLRKDVGDTWFVGLEDEGAAKWILERLRERLWHGKPIRARLKSENVVNKAF 288
            A+++ +E Y S A L  D  +L S MN QMF+P+ V++    + ALS   +LVV A++D    +LN+E+++++PN+   R T+ILREI S T   E+ +    + GC  + S+R DVGDTWFV L  E  A   L  LR + ++  PI+ARLKSEN+    F
Sbjct:   17 ALKKQVEFYFSKANLATD-SYLVSQMNAQMFVPIDVILGFAKVKALSEDAALVVEAIEDSQICSLNDEKNAIKPNVKSERNTIILREIPSATEPAEVEAI---FAGCGAVTSVRSDVGDTWFVTLASEEEAVNTLLALRNKTFNNAPIKARLKSENLFKSFF 174          
BLAST of EWM23576.1 vs. NCBI_GenBank
Match: gi|673037988|ref|XP_008872955.1| (hypothetical protein H310_08825 [Aphanomyces invadans] >gi|574471751|gb|ETV98758.1| hypothetical protein H310_08825 [Aphanomyces invadans])

HSP 1 Score: 134.035 bits (336), Expect = 2.856e-31
Identity = 74/176 (42.05%), Postives = 107/176 (60.80%), Query Frame = 0
Query:  116 SAAGTHEGDV--RAVRQALEHYLSLAYLRADQGFLASYMNPQMFIPLSVLVTLPALAALSPSLSLVVAALKDHPTLTLNEEQSSVRPNIHVPRTTVILREISSETPEEEIRSQLLGWEGCPEIKSLRKDVGDTWFVGLEDEGAAKWILERLRERLWHGKPIRARLKSENVVNKAFL 289
            S A T  GD    A++  +E Y S A L  D  FL S MN QM++P+ V+V    + AL+  ++LVV ++KD    +L+ E  +++PNI   R T+ILREI S T  +++ +    +EGC  + S+R DVGDTWFV +  E  A   L  LR + +H  PI+ARLKSENV+ ++FL
Sbjct:    2 STAPTLSGDALKEALKSQVEFYFSKANLVNDT-FLVSQMNSQMYVPVDVIVGFSKIKALTTDVALVVDSIKDSTVCSLSPEGDAIKPNIKSERNTIILREIPSATDPKDVEAI---FEGCGTVASVRSDVGDTWFVTMATEEDAVNTLLALRSKTFHDAPIKARLKSENVL-RSFL 172          
BLAST of EWM23576.1 vs. NCBI_GenBank
Match: gi|299116309|emb|CBN76115.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 135.576 bits (340), Expect = 4.240e-31
Identity = 68/162 (41.98%), Postives = 101/162 (62.35%), Query Frame = 0
Query:  127 AVRQALEHYLSLAYLRADQGFLASYMNPQMFIPLSVLVTLPALAALSPSLSLVVAALKDHPTLTLNEEQSSVRPNIHVPRTTVILREISSETPEEEIRSQLLGWEGCPEIKSLRKDVGDTWFVGLEDEGAAKWILERLRERLWHGKPIRARLKSENVVNKAF 288
            A+++ +E Y S   L++D GFL S MN QM +P++V+     +  L+   +L+V ++KD    T+  +   ++P+I   R T+ILREI SETP+E+IR    G +G   IKS+R DVGDTWFV +E E  A   +  LR + + GK I+ARLKSEN++   F
Sbjct:   72 ALKKQVEFYFSKQNLQSD-GFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTSD--GIKPSIKQERNTIILREIPSETPQEKIREIFTG-DGVAPIKSIRSDVGDTWFVTMESEDDALNTILALRGKTFEGKAIKARLKSENLLRSFF 229          
The following BLAST results are available for this feature:
BLAST of EWM23576.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104712|gb|EWM23576.1|0.000e+0100.00la-related protein 4b, partial [Nannochloropsis ga... [more]
gi|970660433|gb|KUF97983.1|1.825e-3441.72Ammonium Transporter (Amt) Family [Phytophthora ni... [more]
gi|301093766|ref|XP_002997728.1|2.213e-3341.10conserved hypothetical protein [Phytophthora infes... [more]
gi|675196723|ref|XP_008907246.1|1.226e-3241.72hypothetical protein PPTG_13373 [Phytophthora para... [more]
gi|570981428|gb|ETP41839.1|1.275e-3241.72hypothetical protein F442_11155 [Phytophthora para... [more]
gi|970633468|gb|KUF79126.1|6.221e-3241.72La-related protein 4 [Phytophthora nicotianae][more]
gi|695373127|ref|XP_009514974.1|1.747e-3140.49hypothetical protein PHYSODRAFT_554114 [Phytophtho... [more]
gi|1173945774|gb|OQR94367.1|2.416e-3141.36hypothetical protein ACHHYP_01407 [Achlya hypogyna... [more]
gi|673037988|ref|XP_008872955.1|2.856e-3142.05hypothetical protein H310_08825 [Aphanomyces invad... [more]
gi|299116309|emb|CBN76115.1|4.240e-3141.98conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7111rna7111Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications