EWM23620.1, cds7054 (CDS) Nannochloropsis gaditana

Overview
NameEWM23620.1
Unique Namecds7054
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:379012..379179 -
Alignment locationCM002470.1:378567..378839 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23620.1
ProductComplex 1 LYR protein
Orig transcript idgnl|cribi|Naga_100137g5.22.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:379012..379179 -
CM002470.1supercontigCM002470.1:378567..378839 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
Homology
BLAST of EWM23620.1 vs. NCBI_GenBank
Match: gi|553180658|ref|XP_005853440.1| (hypothetical protein NGA_0427300 [Nannochloropsis gaditana CCMP526] >gi|422295622|gb|EKU22921.1| hypothetical protein NGA_0427300 [Nannochloropsis gaditana CCMP526] >gi|585104771|gb|EWM23620.1| Complex 1 LYR protein [Nannochloropsis gaditana])

HSP 1 Score: 296.975 bits (759), Expect = 6.282e-102
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
Query:    1 MSTSAAAAAKASTGLKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQDHRELEGLVAGIREVEEMFSENIVQGRLNEAGNYEVRLRPEVHLKGKEHEMVTHVDDRLVGDTVVVERSRAPRDGSAPGGSCQSGKG 146
            MSTSAAAAAKASTGLKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQDHRELEGLVAGIREVEEMFSENIVQGRLNEAGNYEVRLRPEVHLKGKEHEMVTHVDDRLVGDTVVVERSRAPRDGSAPGGSCQSGKG
Sbjct:    1 MSTSAAAAAKASTGLKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQDHRELEGLVAGIREVEEMFSENIVQGRLNEAGNYEVRLRPEVHLKGKEHEMVTHVDDRLVGDTVVVERSRAPRDGSAPGGSCQSGKG 146          
BLAST of EWM23620.1 vs. NCBI_GenBank
Match: gi|299116009|emb|CBN76009.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 86.6557 bits (213), Expect = 1.262e-19
Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 0
Query:   15 LKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQDHRELEGLVAGIREVEEMFSENIVQGRLNEAGNY 93
            L+  VLGGYRRL+R+R+  F+ D   ++ ++ QLR EFNK++ V D  ++ GL+ GI EVEEM   NI Q RLN+ GNY
Sbjct:    4 LRREVLGGYRRLMRVRVVAFEDDTTMLEASKQQLRIEFNKNKAVTDPSKIAGLIKGINEVEEMLKYNIAQARLNDRGNY 82          
BLAST of EWM23620.1 vs. NCBI_GenBank
Match: gi|669151798|ref|XP_008611461.1| (hypothetical protein SDRG_07408 [Saprolegnia diclina VS20] >gi|530736935|gb|EQC35177.1| hypothetical protein SDRG_07408 [Saprolegnia diclina VS20])

HSP 1 Score: 82.4185 bits (202), Expect = 1.654e-17
Identity = 48/123 (39.02%), Postives = 68/123 (55.28%), Query Frame = 0
Query:   14 GLKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQDHRELEGLVAGIREVEEMFSENIVQGRLNEAGNYEVRLRPEVHLKGKEHEMVTHVDDRLVGDTVVVERSRAPRDGSA 136
             L+S  L GYRRL+R   R F GD YA+ +AR  +R  F ++R   D   ++ +V GI E E+M   NIVQG+ NE+G++ V+L      K ++ E +T V    V  T  + RS A  D  A
Sbjct:    2 SLRSQALWGYRRLVRASERAFVGDVYAITEARKAIRANFVENRAETDTETIQAMVKGITEAEDMLLFNIVQGKKNESGSFAVKLTDPQKSKMRKDEEITAVTPTTV-KTPEITRSCATGDCPA 123          
BLAST of EWM23620.1 vs. NCBI_GenBank
Match: gi|1210531693|dbj|GAX09660.1| (hypothetical protein FisN_19Lh126 [Fistulifera solaris])

HSP 1 Score: 81.6481 bits (200), Expect = 3.094e-17
Identity = 48/112 (42.86%), Postives = 68/112 (60.71%), Query Frame = 0
Query:   12 STGLKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQ---DHRELEGLVAGIREVEEMFSENIVQGRLN-EAGNYEVRLRPEVHLKGKEHEMVTHVDDRLV 119
            S   K+ VL GYRRL R R  +F GDQ AM+++RL ++ EF K++ V    DH   EGL+  + E E+M   +IV+G LN E GNY+V+++PE H  G +   V  +  R V
Sbjct:    2 SLAPKARVLSGYRRLFRARKNLFAGDQRAMEESRLAIKAEFVKNKAVPTVGDH--FEGLMTMVDEAEDMLRHHIVRGELNQETGNYQVKIKPE-HTVGDDQTHVEPITQRTV 110          
BLAST of EWM23620.1 vs. NCBI_GenBank
Match: gi|1173941751|gb|OQR90857.1| (hypothetical protein ACHHYP_05182 [Achlya hypogyna])

HSP 1 Score: 81.6481 bits (200), Expect = 3.562e-17
Identity = 50/123 (40.65%), Postives = 67/123 (54.47%), Query Frame = 0
Query:   14 GLKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQDHRELEGLVAGIREVEEMFSENIVQGRLNEAGNYEVRLRPEVHLKGKEHEMVTHVDDRLVGDTVVVERSRAPRDGSA 136
             L+S  L GYR L+R   + F+GD YA+ +AR  +R  F ++R   D   +  +V GI E E M   NIVQG+ NEAG+YEV+L      K ++ E +T V    V  T  V RS A  D  A
Sbjct:    2 SLRSQALWGYRSLIRASEQAFRGDVYAIKEARKAIRAAFVENRRETDTETIAAMVKGIEEAESMLRFNIVQGKKNEAGSYEVKLTDPQKGKMRKDEELTAVTTSSV-KTPEVTRSCASGDCPA 123          
BLAST of EWM23620.1 vs. NCBI_GenBank
Match: gi|813192082|ref|XP_012207923.1| (hypothetical protein SPRG_13680 [Saprolegnia parasitica CBS 223.65] >gi|641527051|gb|KDO21367.1| hypothetical protein SPRG_13680 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 80.4925 bits (197), Expect = 9.015e-17
Identity = 48/123 (39.02%), Postives = 67/123 (54.47%), Query Frame = 0
Query:   14 GLKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQDHRELEGLVAGIREVEEMFSENIVQGRLNEAGNYEVRLRPEVHLKGKEHEMVTHVDDRLVGDTVVVERSRAPRDGSA 136
             L+S  L GYRRL+R   + F GD YA+ +AR  +R  F ++R   D   ++ +V GI E E M   NIVQG+ NE+G++ V+L      K ++ E +T V    V  T  V RS A  D  A
Sbjct:    2 SLRSQALWGYRRLVRASEKAFVGDVYAITEARKAIRANFAENRAETDAETIQAMVKGIDEAESMLLFNIVQGKKNESGSFAVKLTDPQKSKMRKDEELTAVTPTTV-KTPEVTRSCATGDCPA 123          
BLAST of EWM23620.1 vs. NCBI_GenBank
Match: gi|1210521558|dbj|GAX19548.1| (hypothetical protein FisN_19Hh126 [Fistulifera solaris])

HSP 1 Score: 80.1073 bits (196), Expect = 1.601e-16
Identity = 48/116 (41.38%), Postives = 68/116 (58.62%), Query Frame = 0
Query:   12 STGLKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQ---DHRELEGLVAGIREVEEMFSENIVQGRLNE-AGNYEVRLRPEVHLKGKEHEMVTHVDDRLVGDTV 123
            S   K+ VL GYRRL R R  +F GD  AM+++RL ++ EF K++ V    DH   EGL+  + E E+M   +IV+G LN+  GNY+V+++PE H  G E   V  +  R V   V
Sbjct:    2 SLAPKARVLSGYRRLFRARKNLFAGDHRAMEESRLAIKAEFVKNKAVPTVGDH--FEGLLTMVDEAEDMLRHHIVRGELNQDTGNYQVKIKPE-HTVGAEQTHVEPITQRTVEKLV 114          
BLAST of EWM23620.1 vs. NCBI_GenBank
Match: gi|698809296|ref|XP_009837677.1| (hypothetical protein H257_12229 [Aphanomyces astaci] >gi|574107378|gb|ETV72891.1| hypothetical protein H257_12229 [Aphanomyces astaci])

HSP 1 Score: 79.7221 bits (195), Expect = 1.652e-16
Identity = 51/134 (38.06%), Postives = 71/134 (52.99%), Query Frame = 0
Query:   11 ASTGLKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQDHRELEGLVAGIREVEEMFSENIVQGRLNEAGNYEVRLR-PEVHLKGKEHEMVTHVDDRLVGDTVVVERSRAPRDGSAPGGSCQS 143
            A++ ++  VLGGYRRLLR   + F  D+ A+ +AR  +R  F ++R V D   L GL+ GI E E M   NIVQG+ NE G ++V L  P+     K+ E+     D   G T VV +       S P G C +
Sbjct:    2 ATSTVRVQVLGGYRRLLRASQQTFGADKRAVVEARKAVRAAFLENRDVHDGHALTGLIKGIEEAEAMLLYNIVQGKANEKGVFQVELSDPQASRIRKDEELSELTPDS--GKTPVVTK-------SCPDGGCPA 126          
BLAST of EWM23620.1 vs. NCBI_GenBank
Match: gi|673038466|ref|XP_008873194.1| (hypothetical protein H310_09019 [Aphanomyces invadans] >gi|574471311|gb|ETV98319.1| hypothetical protein H310_09019 [Aphanomyces invadans])

HSP 1 Score: 79.7221 bits (195), Expect = 1.815e-16
Identity = 54/144 (37.50%), Postives = 74/144 (51.39%), Query Frame = 0
Query:    1 MSTSAAAAAKASTGLKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQDHRELEGLVAGIREVEEMFSENIVQGRLNEAGNYEVRLR-PEVHLKGKEHEMVTHVDDRLVGDTVVVERSRAPRDGSAPGGSCQS 143
            M++ AAAA       +  VLGGYRRLLR   + F  D+ A+ +AR  +R  F ++R V D + L  L+ GI E E M   NIVQG+ NE G +EV+L  P+     K+ E+     D   G   VV +       S P G C +
Sbjct:    1 MASQAAAA-------RVHVLGGYRRLLRASQQTFGADKRAVVEARKAVRAAFLENRDVHDTQALSALIKGIDEAEAMLLYNIVQGKANEKGTFEVKLTDPQKSRIRKDEELTEITPDS--GKAPVVTK-------SCPDGGCSA 128          
BLAST of EWM23620.1 vs. NCBI_GenBank
Match: gi|1173956387|gb|OQS03180.1| (hypothetical protein THRCLA_21220 [Thraustotheca clavata])

HSP 1 Score: 79.337 bits (194), Expect = 2.486e-16
Identity = 48/129 (37.21%), Postives = 73/129 (56.59%), Query Frame = 0
Query:   15 LKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQDHRELEGLVAGIREVEEMFSENIVQGRLNEAGNYEVRLRPEVHLKGKEHEMVTHVDDRLVGDTVVVERSRAPRDGSAPGGSCQS 143
            ++S  L GYRRL+R   + F+GD +A+ +AR  +R+ + ++R+ +D   +E +V GI E E M   NIVQG+ N+ G++EVRL      K ++ E +T V    V  T  V RS A       GG C +
Sbjct:    3 VRSKALWGYRRLIRASEQTFRGDLFAISEARKTIRSTYVENRNEKDPAMIEEMVGGIDEAESMLLFNIVQGKKNDTGSFEVRLTDPQKSKMRKDEELTAVTPTTV-KTPEVTRSCA-------GGDCPA 123          
The following BLAST results are available for this feature:
BLAST of EWM23620.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553180658|ref|XP_005853440.1|6.282e-102100.00hypothetical protein NGA_0427300 [Nannochloropsis ... [more]
gi|299116009|emb|CBN76009.1|1.262e-1950.63conserved unknown protein [Ectocarpus siliculosus][more]
gi|669151798|ref|XP_008611461.1|1.654e-1739.02hypothetical protein SDRG_07408 [Saprolegnia dicli... [more]
gi|1210531693|dbj|GAX09660.1|3.094e-1742.86hypothetical protein FisN_19Lh126 [Fistulifera sol... [more]
gi|1173941751|gb|OQR90857.1|3.562e-1740.65hypothetical protein ACHHYP_05182 [Achlya hypogyna... [more]
gi|813192082|ref|XP_012207923.1|9.015e-1739.02hypothetical protein SPRG_13680 [Saprolegnia paras... [more]
gi|1210521558|dbj|GAX19548.1|1.601e-1641.38hypothetical protein FisN_19Hh126 [Fistulifera sol... [more]
gi|698809296|ref|XP_009837677.1|1.652e-1638.06hypothetical protein H257_12229 [Aphanomyces astac... [more]
gi|673038466|ref|XP_008873194.1|1.815e-1637.50hypothetical protein H310_09019 [Aphanomyces invad... [more]
gi|1173956387|gb|OQS03180.1|2.486e-1637.21hypothetical protein THRCLA_21220 [Thraustotheca c... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7071rna7071Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications