EWM23620.1, cds7054 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23620.1 vs. NCBI_GenBank
Match: gi|553180658|ref|XP_005853440.1| (hypothetical protein NGA_0427300 [Nannochloropsis gaditana CCMP526] >gi|422295622|gb|EKU22921.1| hypothetical protein NGA_0427300 [Nannochloropsis gaditana CCMP526] >gi|585104771|gb|EWM23620.1| Complex 1 LYR protein [Nannochloropsis gaditana]) HSP 1 Score: 296.975 bits (759), Expect = 6.282e-102 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0 Query: 1 MSTSAAAAAKASTGLKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQDHRELEGLVAGIREVEEMFSENIVQGRLNEAGNYEVRLRPEVHLKGKEHEMVTHVDDRLVGDTVVVERSRAPRDGSAPGGSCQSGKG 146 MSTSAAAAAKASTGLKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQDHRELEGLVAGIREVEEMFSENIVQGRLNEAGNYEVRLRPEVHLKGKEHEMVTHVDDRLVGDTVVVERSRAPRDGSAPGGSCQSGKG Sbjct: 1 MSTSAAAAAKASTGLKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQDHRELEGLVAGIREVEEMFSENIVQGRLNEAGNYEVRLRPEVHLKGKEHEMVTHVDDRLVGDTVVVERSRAPRDGSAPGGSCQSGKG 146
BLAST of EWM23620.1 vs. NCBI_GenBank
Match: gi|299116009|emb|CBN76009.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 86.6557 bits (213), Expect = 1.262e-19 Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 0 Query: 15 LKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQDHRELEGLVAGIREVEEMFSENIVQGRLNEAGNY 93 L+ VLGGYRRL+R+R+ F+ D ++ ++ QLR EFNK++ V D ++ GL+ GI EVEEM NI Q RLN+ GNY Sbjct: 4 LRREVLGGYRRLMRVRVVAFEDDTTMLEASKQQLRIEFNKNKAVTDPSKIAGLIKGINEVEEMLKYNIAQARLNDRGNY 82
BLAST of EWM23620.1 vs. NCBI_GenBank
Match: gi|669151798|ref|XP_008611461.1| (hypothetical protein SDRG_07408 [Saprolegnia diclina VS20] >gi|530736935|gb|EQC35177.1| hypothetical protein SDRG_07408 [Saprolegnia diclina VS20]) HSP 1 Score: 82.4185 bits (202), Expect = 1.654e-17 Identity = 48/123 (39.02%), Postives = 68/123 (55.28%), Query Frame = 0 Query: 14 GLKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQDHRELEGLVAGIREVEEMFSENIVQGRLNEAGNYEVRLRPEVHLKGKEHEMVTHVDDRLVGDTVVVERSRAPRDGSA 136 L+S L GYRRL+R R F GD YA+ +AR +R F ++R D ++ +V GI E E+M NIVQG+ NE+G++ V+L K ++ E +T V V T + RS A D A Sbjct: 2 SLRSQALWGYRRLVRASERAFVGDVYAITEARKAIRANFVENRAETDTETIQAMVKGITEAEDMLLFNIVQGKKNESGSFAVKLTDPQKSKMRKDEEITAVTPTTV-KTPEITRSCATGDCPA 123
BLAST of EWM23620.1 vs. NCBI_GenBank
Match: gi|1210531693|dbj|GAX09660.1| (hypothetical protein FisN_19Lh126 [Fistulifera solaris]) HSP 1 Score: 81.6481 bits (200), Expect = 3.094e-17 Identity = 48/112 (42.86%), Postives = 68/112 (60.71%), Query Frame = 0 Query: 12 STGLKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQ---DHRELEGLVAGIREVEEMFSENIVQGRLN-EAGNYEVRLRPEVHLKGKEHEMVTHVDDRLV 119 S K+ VL GYRRL R R +F GDQ AM+++RL ++ EF K++ V DH EGL+ + E E+M +IV+G LN E GNY+V+++PE H G + V + R V Sbjct: 2 SLAPKARVLSGYRRLFRARKNLFAGDQRAMEESRLAIKAEFVKNKAVPTVGDH--FEGLMTMVDEAEDMLRHHIVRGELNQETGNYQVKIKPE-HTVGDDQTHVEPITQRTV 110
BLAST of EWM23620.1 vs. NCBI_GenBank
Match: gi|1173941751|gb|OQR90857.1| (hypothetical protein ACHHYP_05182 [Achlya hypogyna]) HSP 1 Score: 81.6481 bits (200), Expect = 3.562e-17 Identity = 50/123 (40.65%), Postives = 67/123 (54.47%), Query Frame = 0 Query: 14 GLKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQDHRELEGLVAGIREVEEMFSENIVQGRLNEAGNYEVRLRPEVHLKGKEHEMVTHVDDRLVGDTVVVERSRAPRDGSA 136 L+S L GYR L+R + F+GD YA+ +AR +R F ++R D + +V GI E E M NIVQG+ NEAG+YEV+L K ++ E +T V V T V RS A D A Sbjct: 2 SLRSQALWGYRSLIRASEQAFRGDVYAIKEARKAIRAAFVENRRETDTETIAAMVKGIEEAESMLRFNIVQGKKNEAGSYEVKLTDPQKGKMRKDEELTAVTTSSV-KTPEVTRSCASGDCPA 123
BLAST of EWM23620.1 vs. NCBI_GenBank
Match: gi|813192082|ref|XP_012207923.1| (hypothetical protein SPRG_13680 [Saprolegnia parasitica CBS 223.65] >gi|641527051|gb|KDO21367.1| hypothetical protein SPRG_13680 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 80.4925 bits (197), Expect = 9.015e-17 Identity = 48/123 (39.02%), Postives = 67/123 (54.47%), Query Frame = 0 Query: 14 GLKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQDHRELEGLVAGIREVEEMFSENIVQGRLNEAGNYEVRLRPEVHLKGKEHEMVTHVDDRLVGDTVVVERSRAPRDGSA 136 L+S L GYRRL+R + F GD YA+ +AR +R F ++R D ++ +V GI E E M NIVQG+ NE+G++ V+L K ++ E +T V V T V RS A D A Sbjct: 2 SLRSQALWGYRRLVRASEKAFVGDVYAITEARKAIRANFAENRAETDAETIQAMVKGIDEAESMLLFNIVQGKKNESGSFAVKLTDPQKSKMRKDEELTAVTPTTV-KTPEVTRSCATGDCPA 123
BLAST of EWM23620.1 vs. NCBI_GenBank
Match: gi|1210521558|dbj|GAX19548.1| (hypothetical protein FisN_19Hh126 [Fistulifera solaris]) HSP 1 Score: 80.1073 bits (196), Expect = 1.601e-16 Identity = 48/116 (41.38%), Postives = 68/116 (58.62%), Query Frame = 0 Query: 12 STGLKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQ---DHRELEGLVAGIREVEEMFSENIVQGRLNE-AGNYEVRLRPEVHLKGKEHEMVTHVDDRLVGDTV 123 S K+ VL GYRRL R R +F GD AM+++RL ++ EF K++ V DH EGL+ + E E+M +IV+G LN+ GNY+V+++PE H G E V + R V V Sbjct: 2 SLAPKARVLSGYRRLFRARKNLFAGDHRAMEESRLAIKAEFVKNKAVPTVGDH--FEGLLTMVDEAEDMLRHHIVRGELNQDTGNYQVKIKPE-HTVGAEQTHVEPITQRTVEKLV 114
BLAST of EWM23620.1 vs. NCBI_GenBank
Match: gi|698809296|ref|XP_009837677.1| (hypothetical protein H257_12229 [Aphanomyces astaci] >gi|574107378|gb|ETV72891.1| hypothetical protein H257_12229 [Aphanomyces astaci]) HSP 1 Score: 79.7221 bits (195), Expect = 1.652e-16 Identity = 51/134 (38.06%), Postives = 71/134 (52.99%), Query Frame = 0 Query: 11 ASTGLKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQDHRELEGLVAGIREVEEMFSENIVQGRLNEAGNYEVRLR-PEVHLKGKEHEMVTHVDDRLVGDTVVVERSRAPRDGSAPGGSCQS 143 A++ ++ VLGGYRRLLR + F D+ A+ +AR +R F ++R V D L GL+ GI E E M NIVQG+ NE G ++V L P+ K+ E+ D G T VV + S P G C + Sbjct: 2 ATSTVRVQVLGGYRRLLRASQQTFGADKRAVVEARKAVRAAFLENRDVHDGHALTGLIKGIEEAEAMLLYNIVQGKANEKGVFQVELSDPQASRIRKDEELSELTPDS--GKTPVVTK-------SCPDGGCPA 126
BLAST of EWM23620.1 vs. NCBI_GenBank
Match: gi|673038466|ref|XP_008873194.1| (hypothetical protein H310_09019 [Aphanomyces invadans] >gi|574471311|gb|ETV98319.1| hypothetical protein H310_09019 [Aphanomyces invadans]) HSP 1 Score: 79.7221 bits (195), Expect = 1.815e-16 Identity = 54/144 (37.50%), Postives = 74/144 (51.39%), Query Frame = 0 Query: 1 MSTSAAAAAKASTGLKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQDHRELEGLVAGIREVEEMFSENIVQGRLNEAGNYEVRLR-PEVHLKGKEHEMVTHVDDRLVGDTVVVERSRAPRDGSAPGGSCQS 143 M++ AAAA + VLGGYRRLLR + F D+ A+ +AR +R F ++R V D + L L+ GI E E M NIVQG+ NE G +EV+L P+ K+ E+ D G VV + S P G C + Sbjct: 1 MASQAAAA-------RVHVLGGYRRLLRASQQTFGADKRAVVEARKAVRAAFLENRDVHDTQALSALIKGIDEAEAMLLYNIVQGKANEKGTFEVKLTDPQKSRIRKDEELTEITPDS--GKAPVVTK-------SCPDGGCSA 128
BLAST of EWM23620.1 vs. NCBI_GenBank
Match: gi|1173956387|gb|OQS03180.1| (hypothetical protein THRCLA_21220 [Thraustotheca clavata]) HSP 1 Score: 79.337 bits (194), Expect = 2.486e-16 Identity = 48/129 (37.21%), Postives = 73/129 (56.59%), Query Frame = 0 Query: 15 LKSSVLGGYRRLLRLRLRVFQGDQYAMDQARLQLRTEFNKHRHVQDHRELEGLVAGIREVEEMFSENIVQGRLNEAGNYEVRLRPEVHLKGKEHEMVTHVDDRLVGDTVVVERSRAPRDGSAPGGSCQS 143 ++S L GYRRL+R + F+GD +A+ +AR +R+ + ++R+ +D +E +V GI E E M NIVQG+ N+ G++EVRL K ++ E +T V V T V RS A GG C + Sbjct: 3 VRSKALWGYRRLIRASEQTFRGDLFAISEARKTIRSTYVENRNEKDPAMIEEMVGGIDEAESMLLFNIVQGKKNDTGSFEVRLTDPQKSKMRKDEELTAVTPTTV-KTPEVTRSCA-------GGDCPA 123 The following BLAST results are available for this feature:
BLAST of EWM23620.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|