EWM23636.1, cds7037 (CDS) Nannochloropsis gaditana

Overview
NameEWM23636.1
Unique Namecds7037
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:331391..331534 -
Alignment locationCM002470.1:330839..331231 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23636.1
Producttp53rk-binding protein
Orig transcript idgnl|cribi|Naga_100165g7.9688.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:331391..331534 -
CM002470.1supercontigCM002470.1:330839..331231 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR013926CGI121/TPRKB
Homology
BLAST of EWM23636.1 vs. NCBI_GenBank
Match: gi|585104788|gb|EWM23636.1| (tp53rk-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 362.459 bits (929), Expect = 8.395e-127
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
Query:    1 MISWDASRAAPVEVSASGNKDLGSSNEANGNHSESFVFKTTLFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFGGGGGGPDKDGSTALSLHRYARPRDYHTSLPTRARASGPGGASLVMP 178
            MISWDASRAAPVEVSASGNKDLGSSNEANGNHSESFVFKTTLFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFGGGGGGPDKDGSTALSLHRYARPRDYHTSLPTRARASGPGGASLVMP
Sbjct:    1 MISWDASRAAPVEVSASGNKDLGSSNEANGNHSESFVFKTTLFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFGGGGGGPDKDGSTALSLHRYARPRDYHTSLPTRARASGPGGASLVMP 178          
BLAST of EWM23636.1 vs. NCBI_GenBank
Match: gi|959043920|ref|XP_014724447.1| (PREDICTED: EKC/KEOPS complex subunit TPRKB [Sturnus vulgaris])

HSP 1 Score: 88.5817 bits (218), Expect = 7.635e-19
Identity = 46/91 (50.55%), Postives = 68/91 (74.73%), Query Frame = 0
Query:   42 LFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFG 132
            LFP+ H++ LLLFQ VKNA+A+R+  + G S D ALINP MI  +F +L+AA+ A+     G M+ +TL+AE+++SLSP+ +IS+AF+ FG
Sbjct:   14 LFPD-HSVTLLLFQHVKNAAALRKKAMEG-SIDGALINPAMIVDTFQILVAANKAVHLQKIGKMKTRTLNAEIIFSLSPSNNISDAFKKFG 102          
BLAST of EWM23636.1 vs. NCBI_GenBank
Match: gi|929419961|ref|XP_014104581.1| (PREDICTED: EKC/KEOPS complex subunit TPRKB isoform X2 [Pseudopodoces humilis])

HSP 1 Score: 84.7297 bits (208), Expect = 1.723e-17
Identity = 45/91 (49.45%), Postives = 67/91 (73.63%), Query Frame = 0
Query:   42 LFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFG 132
            LFP++ ++ LLLFQ VKNA+A+R+  + G S D ALINP MI   F +L+AA+ A+     G M+ +TL+AE+++SLSP+ +IS+AF+ FG
Sbjct:    9 LFPDR-SVTLLLFQHVKNAAALRKKAMEG-SIDGALINPAMIVDPFQILVAANKAVHLQKIGKMKTRTLYAEIIFSLSPSNNISDAFKKFG 97          
BLAST of EWM23636.1 vs. NCBI_GenBank
Match: gi|543347473|ref|XP_005519253.1| (PREDICTED: EKC/KEOPS complex subunit TPRKB isoform X1 [Pseudopodoces humilis])

HSP 1 Score: 84.3445 bits (207), Expect = 2.288e-17
Identity = 45/91 (49.45%), Postives = 67/91 (73.63%), Query Frame = 0
Query:   42 LFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFG 132
            LFP++ ++ LLLFQ VKNA+A+R+  + G S D ALINP MI   F +L+AA+ A+     G M+ +TL+AE+++SLSP+ +IS+AF+ FG
Sbjct:    9 LFPDR-SVTLLLFQHVKNAAALRKKAMEG-SIDGALINPAMIVDPFQILVAANKAVHLQKIGKMKTRTLYAEIIFSLSPSNNISDAFKKFG 97          
BLAST of EWM23636.1 vs. NCBI_GenBank
Match: gi|998692860|ref|XP_015483995.1| (PREDICTED: EKC/KEOPS complex subunit TPRKB [Parus major])

HSP 1 Score: 84.3445 bits (207), Expect = 2.600e-17
Identity = 45/91 (49.45%), Postives = 67/91 (73.63%), Query Frame = 0
Query:   42 LFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFG 132
            LFP++ ++ LLLFQ VKNA+A+R+  + G S D ALINP MI   F +L+AA+ A+     G M+ +TL+AE+++SLSP+ +IS+AF+ FG
Sbjct:    9 LFPDR-SVTLLLFQHVKNAAALRKKAMEG-SIDGALINPAMIVDPFQILVAANKAVHLQKIGKMKTRTLYAEIIFSLSPSNNISDAFKKFG 97          
BLAST of EWM23636.1 vs. NCBI_GenBank
Match: gi|410928383|ref|XP_003977580.1| (PREDICTED: EKC/KEOPS complex subunit TPRKB, partial [Takifugu rubripes])

HSP 1 Score: 83.5741 bits (205), Expect = 2.638e-17
Identity = 46/107 (42.99%), Postives = 72/107 (67.29%), Query Frame = 0
Query:   42 LFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFGGGGGGPDKDGSTALSL 148
            LFP+ H +  +LF+DVKNA+ +R++ +AG   + ALI P M+ +SF +L+AA+ A+     G M+ ++L++E+++SLSPT +ISEAF+ FG   G    D S  L L
Sbjct:    9 LFPD-HRVTQVLFKDVKNAAELRQSAVAGK-INAALIKPAMVVNSFQVLVAANKAVHLQKTGKMKTRSLYSEIIFSLSPTNNISEAFKRFGIADG----DDSVLLVL 109          
BLAST of EWM23636.1 vs. NCBI_GenBank
Match: gi|543267317|ref|XP_005423562.1| (PREDICTED: EKC/KEOPS complex subunit TPRKB [Geospiza fortis])

HSP 1 Score: 84.3445 bits (207), Expect = 3.018e-17
Identity = 45/91 (49.45%), Postives = 67/91 (73.63%), Query Frame = 0
Query:   42 LFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFG 132
            LFPE+ ++ LLLFQ VKNA+A+R+  + G S + ALINP MI   F +L+AA+ A+     G M+ +TL+AE+++SLSP+ +IS+AF+ FG
Sbjct:    9 LFPER-SVTLLLFQHVKNAAALRKKAMEG-SIEGALINPAMIVDPFQILVAANKAVHLQKIGKMKTRTLYAEIIFSLSPSNNISDAFKKFG 97          
BLAST of EWM23636.1 vs. NCBI_GenBank
Match: gi|542145849|ref|XP_005481954.1| (PREDICTED: EKC/KEOPS complex subunit TPRKB [Zonotrichia albicollis])

HSP 1 Score: 83.9593 bits (206), Expect = 4.287e-17
Identity = 45/91 (49.45%), Postives = 67/91 (73.63%), Query Frame = 0
Query:   42 LFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFG 132
            LFPE+ ++ LLLFQ VKNA+A+R+  + G S + ALINP MI   F +L+AA+ A+     G M+ +TL+AE+++SLSP+ +IS+AF+ FG
Sbjct:    9 LFPER-SVTLLLFQHVKNAAALRKKAMDG-SIEGALINPAMIVDPFQILVAANKAVHLQKIGKMKTRTLYAEIIFSLSPSNNISDAFKKFG 97          
BLAST of EWM23636.1 vs. NCBI_GenBank
Match: gi|1095981154|ref|XP_009085064.2| (PREDICTED: EKC/KEOPS complex subunit TPRKB [Serinus canaria])

HSP 1 Score: 85.1149 bits (209), Expect = 5.585e-17
Identity = 44/91 (48.35%), Postives = 67/91 (73.63%), Query Frame = 0
Query:   42 LFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFG 132
            LFPE+ ++ LLLFQ VKNA+A+R+  + G S + ALINP MI   F +L+AA+ A+     G M+ +TL++E+++SLSP+ +IS+AF+ FG
Sbjct:   72 LFPER-SVTLLLFQHVKNAAALRKKAMEG-SIEGALINPAMIVDPFQILVAANKAVHLQKIGKMKTRTLYSEIIFSLSPSNNISDAFKKFG 160          
BLAST of EWM23636.1 vs. NCBI_GenBank
Match: gi|524982337|ref|XP_005039182.1| (PREDICTED: EKC/KEOPS complex subunit TPRKB [Ficedula albicollis])

HSP 1 Score: 83.1889 bits (204), Expect = 8.028e-17
Identity = 44/91 (48.35%), Postives = 66/91 (72.53%), Query Frame = 0
Query:   42 LFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFG 132
            LFP+ H++ LLLFQ VKNA+A+R+  + G   + ALINP MI   F +L+AA+ A+     G M+ +TL+AE+++SLSP+ +IS+AF+ FG
Sbjct:    9 LFPQ-HSVTLLLFQHVKNAAALRKKAMEG-CIEGALINPAMIVDPFQILVAANKAVHLQKIGKMKTRTLNAEIIFSLSPSNNISDAFKKFG 97          
The following BLAST results are available for this feature:
BLAST of EWM23636.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104788|gb|EWM23636.1|8.395e-127100.00tp53rk-binding protein [Nannochloropsis gaditana][more]
gi|959043920|ref|XP_014724447.1|7.635e-1950.55PREDICTED: EKC/KEOPS complex subunit TPRKB [Sturnu... [more]
gi|929419961|ref|XP_014104581.1|1.723e-1749.45PREDICTED: EKC/KEOPS complex subunit TPRKB isoform... [more]
gi|543347473|ref|XP_005519253.1|2.288e-1749.45PREDICTED: EKC/KEOPS complex subunit TPRKB isoform... [more]
gi|998692860|ref|XP_015483995.1|2.600e-1749.45PREDICTED: EKC/KEOPS complex subunit TPRKB [Parus ... [more]
gi|410928383|ref|XP_003977580.1|2.638e-1742.99PREDICTED: EKC/KEOPS complex subunit TPRKB, partia... [more]
gi|543267317|ref|XP_005423562.1|3.018e-1749.45PREDICTED: EKC/KEOPS complex subunit TPRKB [Geospi... [more]
gi|542145849|ref|XP_005481954.1|4.287e-1749.45PREDICTED: EKC/KEOPS complex subunit TPRKB [Zonotr... [more]
gi|1095981154|ref|XP_009085064.2|5.585e-1748.35PREDICTED: EKC/KEOPS complex subunit TPRKB [Serinu... [more]
gi|524982337|ref|XP_005039182.1|8.028e-1748.35PREDICTED: EKC/KEOPS complex subunit TPRKB [Ficedu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7054rna7054Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications