EWM23636.1, cds7037 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23636.1 vs. NCBI_GenBank
Match: gi|585104788|gb|EWM23636.1| (tp53rk-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 362.459 bits (929), Expect = 8.395e-127 Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
Query: 1 MISWDASRAAPVEVSASGNKDLGSSNEANGNHSESFVFKTTLFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFGGGGGGPDKDGSTALSLHRYARPRDYHTSLPTRARASGPGGASLVMP 178
MISWDASRAAPVEVSASGNKDLGSSNEANGNHSESFVFKTTLFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFGGGGGGPDKDGSTALSLHRYARPRDYHTSLPTRARASGPGGASLVMP
Sbjct: 1 MISWDASRAAPVEVSASGNKDLGSSNEANGNHSESFVFKTTLFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFGGGGGGPDKDGSTALSLHRYARPRDYHTSLPTRARASGPGGASLVMP 178
BLAST of EWM23636.1 vs. NCBI_GenBank
Match: gi|959043920|ref|XP_014724447.1| (PREDICTED: EKC/KEOPS complex subunit TPRKB [Sturnus vulgaris]) HSP 1 Score: 88.5817 bits (218), Expect = 7.635e-19 Identity = 46/91 (50.55%), Postives = 68/91 (74.73%), Query Frame = 0
Query: 42 LFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFG 132
LFP+ H++ LLLFQ VKNA+A+R+ + G S D ALINP MI +F +L+AA+ A+ G M+ +TL+AE+++SLSP+ +IS+AF+ FG
Sbjct: 14 LFPD-HSVTLLLFQHVKNAAALRKKAMEG-SIDGALINPAMIVDTFQILVAANKAVHLQKIGKMKTRTLNAEIIFSLSPSNNISDAFKKFG 102
BLAST of EWM23636.1 vs. NCBI_GenBank
Match: gi|929419961|ref|XP_014104581.1| (PREDICTED: EKC/KEOPS complex subunit TPRKB isoform X2 [Pseudopodoces humilis]) HSP 1 Score: 84.7297 bits (208), Expect = 1.723e-17 Identity = 45/91 (49.45%), Postives = 67/91 (73.63%), Query Frame = 0
Query: 42 LFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFG 132
LFP++ ++ LLLFQ VKNA+A+R+ + G S D ALINP MI F +L+AA+ A+ G M+ +TL+AE+++SLSP+ +IS+AF+ FG
Sbjct: 9 LFPDR-SVTLLLFQHVKNAAALRKKAMEG-SIDGALINPAMIVDPFQILVAANKAVHLQKIGKMKTRTLYAEIIFSLSPSNNISDAFKKFG 97
BLAST of EWM23636.1 vs. NCBI_GenBank
Match: gi|543347473|ref|XP_005519253.1| (PREDICTED: EKC/KEOPS complex subunit TPRKB isoform X1 [Pseudopodoces humilis]) HSP 1 Score: 84.3445 bits (207), Expect = 2.288e-17 Identity = 45/91 (49.45%), Postives = 67/91 (73.63%), Query Frame = 0
Query: 42 LFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFG 132
LFP++ ++ LLLFQ VKNA+A+R+ + G S D ALINP MI F +L+AA+ A+ G M+ +TL+AE+++SLSP+ +IS+AF+ FG
Sbjct: 9 LFPDR-SVTLLLFQHVKNAAALRKKAMEG-SIDGALINPAMIVDPFQILVAANKAVHLQKIGKMKTRTLYAEIIFSLSPSNNISDAFKKFG 97
BLAST of EWM23636.1 vs. NCBI_GenBank
Match: gi|998692860|ref|XP_015483995.1| (PREDICTED: EKC/KEOPS complex subunit TPRKB [Parus major]) HSP 1 Score: 84.3445 bits (207), Expect = 2.600e-17 Identity = 45/91 (49.45%), Postives = 67/91 (73.63%), Query Frame = 0
Query: 42 LFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFG 132
LFP++ ++ LLLFQ VKNA+A+R+ + G S D ALINP MI F +L+AA+ A+ G M+ +TL+AE+++SLSP+ +IS+AF+ FG
Sbjct: 9 LFPDR-SVTLLLFQHVKNAAALRKKAMEG-SIDGALINPAMIVDPFQILVAANKAVHLQKIGKMKTRTLYAEIIFSLSPSNNISDAFKKFG 97
BLAST of EWM23636.1 vs. NCBI_GenBank
Match: gi|410928383|ref|XP_003977580.1| (PREDICTED: EKC/KEOPS complex subunit TPRKB, partial [Takifugu rubripes]) HSP 1 Score: 83.5741 bits (205), Expect = 2.638e-17 Identity = 46/107 (42.99%), Postives = 72/107 (67.29%), Query Frame = 0
Query: 42 LFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFGGGGGGPDKDGSTALSL 148
LFP+ H + +LF+DVKNA+ +R++ +AG + ALI P M+ +SF +L+AA+ A+ G M+ ++L++E+++SLSPT +ISEAF+ FG G D S L L
Sbjct: 9 LFPD-HRVTQVLFKDVKNAAELRQSAVAGK-INAALIKPAMVVNSFQVLVAANKAVHLQKTGKMKTRSLYSEIIFSLSPTNNISEAFKRFGIADG----DDSVLLVL 109
BLAST of EWM23636.1 vs. NCBI_GenBank
Match: gi|543267317|ref|XP_005423562.1| (PREDICTED: EKC/KEOPS complex subunit TPRKB [Geospiza fortis]) HSP 1 Score: 84.3445 bits (207), Expect = 3.018e-17 Identity = 45/91 (49.45%), Postives = 67/91 (73.63%), Query Frame = 0
Query: 42 LFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFG 132
LFPE+ ++ LLLFQ VKNA+A+R+ + G S + ALINP MI F +L+AA+ A+ G M+ +TL+AE+++SLSP+ +IS+AF+ FG
Sbjct: 9 LFPER-SVTLLLFQHVKNAAALRKKAMEG-SIEGALINPAMIVDPFQILVAANKAVHLQKIGKMKTRTLYAEIIFSLSPSNNISDAFKKFG 97
BLAST of EWM23636.1 vs. NCBI_GenBank
Match: gi|542145849|ref|XP_005481954.1| (PREDICTED: EKC/KEOPS complex subunit TPRKB [Zonotrichia albicollis]) HSP 1 Score: 83.9593 bits (206), Expect = 4.287e-17 Identity = 45/91 (49.45%), Postives = 67/91 (73.63%), Query Frame = 0
Query: 42 LFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFG 132
LFPE+ ++ LLLFQ VKNA+A+R+ + G S + ALINP MI F +L+AA+ A+ G M+ +TL+AE+++SLSP+ +IS+AF+ FG
Sbjct: 9 LFPER-SVTLLLFQHVKNAAALRKKAMDG-SIEGALINPAMIVDPFQILVAANKAVHLQKIGKMKTRTLYAEIIFSLSPSNNISDAFKKFG 97
BLAST of EWM23636.1 vs. NCBI_GenBank
Match: gi|1095981154|ref|XP_009085064.2| (PREDICTED: EKC/KEOPS complex subunit TPRKB [Serinus canaria]) HSP 1 Score: 85.1149 bits (209), Expect = 5.585e-17 Identity = 44/91 (48.35%), Postives = 67/91 (73.63%), Query Frame = 0
Query: 42 LFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFG 132
LFPE+ ++ LLLFQ VKNA+A+R+ + G S + ALINP MI F +L+AA+ A+ G M+ +TL++E+++SLSP+ +IS+AF+ FG
Sbjct: 72 LFPER-SVTLLLFQHVKNAAALRKKAMEG-SIEGALINPAMIVDPFQILVAANKAVHLQKIGKMKTRTLYSEIIFSLSPSNNISDAFKKFG 160
BLAST of EWM23636.1 vs. NCBI_GenBank
Match: gi|524982337|ref|XP_005039182.1| (PREDICTED: EKC/KEOPS complex subunit TPRKB [Ficedula albicollis]) HSP 1 Score: 83.1889 bits (204), Expect = 8.028e-17 Identity = 44/91 (48.35%), Postives = 66/91 (72.53%), Query Frame = 0
Query: 42 LFPEKHTLCLLLFQDVKNASAVRETLLAGNSPDFALINPDMIFSSFHLLLAASIALLHANQGTMRVKTLHAELLYSLSPTTSISEAFRIFG 132
LFP+ H++ LLLFQ VKNA+A+R+ + G + ALINP MI F +L+AA+ A+ G M+ +TL+AE+++SLSP+ +IS+AF+ FG
Sbjct: 9 LFPQ-HSVTLLLFQHVKNAAALRKKAMEG-CIEGALINPAMIVDPFQILVAANKAVHLQKIGKMKTRTLNAEIIFSLSPSNNISDAFKKFG 97 The following BLAST results are available for this feature:
BLAST of EWM23636.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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