EWM23633.1, cds7034 (CDS) Nannochloropsis gaditana

Overview
NameEWM23633.1
Unique Namecds7034
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:325679..325881 -
Alignment locationCM002470.1:325418..325592 -
Alignment locationCM002470.1:325220..325300 -
Alignment locationCM002470.1:324766..325032 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23633.1
ProductCRAL-TRIO domain protein
Orig transcript idgnl|cribi|Naga_100165g10.9685.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:325679..325881 -
CM002470.1supercontigCM002470.1:325418..325592 -
CM002470.1supercontigCM002470.1:325220..325300 -
CM002470.1supercontigCM002470.1:324766..325032 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR001251CRAL-TRIO_dom
Homology
BLAST of EWM23633.1 vs. NCBI_GenBank
Match: gi|585104785|gb|EWM23633.1| (CRAL-TRIO domain protein [Nannochloropsis gaditana])

HSP 1 Score: 506.138 bits (1302), Expect = 0.000e+0
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0
Query:    1 MVLEFLTPRKWDILTPKAKDTQEALRIELEKMTAHFPAAKEKDLKRFLMGFHTKADKAIPAYEAHLHWRAQNLPIAKESCLKELQKGRFYFHGMDLEGRPVAYYSLACHDPKHCDISEIMRMMTYQVEKVLAEMPDDVKGFTIVWDTRNTGIKNTDTEFLREFLNFFRAQYPEVLAQLLIVPVGFFQRTMWNTFARFLDERRASRIRMVATMEDLRDYISEKELLTTHGGKNTWHFDPDNA 241
            MVLEFLTPRKWDILTPKAKDTQEALRIELEKMTAHFPAAKEKDLKRFLMGFHTKADKAIPAYEAHLHWRAQNLPIAKESCLKELQKGRFYFHGMDLEGRPVAYYSLACHDPKHCDISEIMRMMTYQVEKVLAEMPDDVKGFTIVWDTRNTGIKNTDTEFLREFLNFFRAQYPEVLAQLLIVPVGFFQRTMWNTFARFLDERRASRIRMVATMEDLRDYISEKELLTTHGGKNTWHFDPDNA
Sbjct:    1 MVLEFLTPRKWDILTPKAKDTQEALRIELEKMTAHFPAAKEKDLKRFLMGFHTKADKAIPAYEAHLHWRAQNLPIAKESCLKELQKGRFYFHGMDLEGRPVAYYSLACHDPKHCDISEIMRMMTYQVEKVLAEMPDDVKGFTIVWDTRNTGIKNTDTEFLREFLNFFRAQYPEVLAQLLIVPVGFFQRTMWNTFARFLDERRASRIRMVATMEDLRDYISEKELLTTHGGKNTWHFDPDNA 241          
BLAST of EWM23633.1 vs. NCBI_GenBank
Match: gi|551539036|ref|XP_005758036.1| (hypothetical protein EMIHUDRAFT_438954 [Emiliania huxleyi CCMP1516] >gi|485605498|gb|EOD05607.1| hypothetical protein EMIHUDRAFT_438954 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 125.176 bits (313), Expect = 2.810e-31
Identity = 69/208 (33.17%), Postives = 102/208 (49.04%), Query Frame = 0
Query:   33 TAHFPAAKEKDLKRFLMGFHTKADKAIPAYEAHLHWRAQNLPIAKE-SCLKELQKGRFYFHGMDLEGRPVAYYSLACHDPKHCDISEIMRMMTYQVEKVLAEMPDDVKGFTIVWDTRNTGI-KNTDTEFLREFLNFFRAQYPEVLAQLLIVPVGFFQRTMWNTFARFLDERRASRIRMVATMEDLRDYISEKELLTTHGGKNTWHFDP 238
            T H  A     L+RFL+    K    +    AH+ WRA+NLPI  E + L ELQKG+FY +G D  GRP+        DP   D+   +R + Y++E+V+A++P     F + +D     I KN D   L+         YPE L    + P G     +W     FLD R  S+++ + T E+L   +  + + T +GG +T  FDP
Sbjct:   43 TDHPLAGDSLQLRRFLVARKFKVPATVEMISAHVKWRAENLPIKPEGAVLAELQKGKFYSYGTDAAGRPLVLIHSGKFDPATRDLEASVRSVFYEIERVIAQLPPGQAQFAVFYDRTGFSIKKNWDYTLLKAVFTQLSNNYPERLGAGYVYPSGKLLPMLWGLVKHFLDARTRSKVKFINTQEELLKSLPAEYVPTAYGGSSTHAFDP 250          
BLAST of EWM23633.1 vs. NCBI_GenBank
Match: gi|551572448|ref|XP_005772066.1| (hypothetical protein EMIHUDRAFT_444869 [Emiliania huxleyi CCMP1516] >gi|485623434|gb|EOD19637.1| hypothetical protein EMIHUDRAFT_444869 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 124.79 bits (312), Expect = 3.296e-31
Identity = 69/208 (33.17%), Postives = 102/208 (49.04%), Query Frame = 0
Query:   33 TAHFPAAKEKDLKRFLMGFHTKADKAIPAYEAHLHWRAQNLPIAKE-SCLKELQKGRFYFHGMDLEGRPVAYYSLACHDPKHCDISEIMRMMTYQVEKVLAEMPDDVKGFTIVWDTRNTGI-KNTDTEFLREFLNFFRAQYPEVLAQLLIVPVGFFQRTMWNTFARFLDERRASRIRMVATMEDLRDYISEKELLTTHGGKNTWHFDP 238
            T H  A     L+RFL+    K    +    AH+ WRA+NLPI  E + L ELQKG+FY +G D  GRP+        DP   D+   +R + Y++E+V+A++P     F + +D     I KN D   L+         YPE L    + P G     +W     FLD R  S+++ + T E+L   +  + + T +GG +T  FDP
Sbjct:   43 TDHPLAGDSLQLRRFLVARKFKVPATVEMISAHVKWRAENLPIKPEGAVLAELQKGKFYSYGTDAAGRPLVLIHSGKFDPATRDLEASVRSVFYEIERVIAQLPPGQAQFAVFYDRTGFSIKKNWDYTLLKAVFTQLSDNYPERLGAGYVYPSGKLLPMLWGLVKHFLDARTRSKVKFINTQEELLKSLPAEYVPTAYGGSSTHAFDP 250          
BLAST of EWM23633.1 vs. NCBI_GenBank
Match: gi|1179510636|ref|XP_020677938.1| (random slug protein 5-like isoform X3 [Dendrobium catenatum])

HSP 1 Score: 96.6709 bits (239), Expect = 1.244e-20
Identity = 61/213 (28.64%), Postives = 99/213 (46.48%), Query Frame = 0
Query:   25 LRIELEKMTAHFPAAKEKDLKRFLMGFHTKADKAIPAYEAHLHWRAQNLP---IAKESCLKELQKGRFYFHGMDLEGRPVAYYSLACHDPKHCDISEIMRMMTYQVEKVLAEMPDDVKGFTIVWDTRNTGIKNTDTEFLREFLNFFRAQYPEVLAQLLIVPVGFFQRTMWNTFARFLDERRASRIRMVA---TMEDLRDYISEKELLTTHGGK 231
            LR  +E+  ++     +  LKRFL       D+A      HL WR +N+P   I++     E+ + + +  G D  GRP+A      H+P + D++E  R   Y +EK+ + M    + FTI+ D +  G  N D       L+  +  YPE L +LL++ V +     W     F+D+   S+I  V     M  L + I E +L   +GG+
Sbjct:   16 LRNLVERKDSNAKDLDDSTLKRFLRARDLDVDRASNFLLKHLSWRRENIPKGFISESEIQNEIAQKKIFSQGFDKNGRPIAVLFGCRHNPSNRDLNEFKRFAAYILEKLCSRMQGKEEKFTIIADLKGWGYSNCDIRAYIAALDILQNNYPERLGKLLLLHVPYLFMKAWKIICPFIDKNTKSKIIFVEDKNKMTTLLEDIDESQLPEQYGGR 228          
BLAST of EWM23633.1 vs. NCBI_GenBank
Match: gi|1179510642|ref|XP_020677940.1| (random slug protein 5-like isoform X5 [Dendrobium catenatum])

HSP 1 Score: 95.5153 bits (236), Expect = 2.433e-20
Identity = 58/194 (29.90%), Postives = 91/194 (46.91%), Query Frame = 0
Query:   44 LKRFLMGFHTKADKAIPAYEAHLHWRAQNLP---IAKESCLKELQKGRFYFHGMDLEGRPVAYYSLACHDPKHCDISEIMRMMTYQVEKVLAEMPDDVKGFTIVWDTRNTGIKNTDTEFLREFLNFFRAQYPEVLAQLLIVPVGFFQRTMWNTFARFLDERRASRIRMVA---TMEDLRDYISEKELLTTHGGK 231
            LKRFL       D+A      HL WR +N+P   I++     E+ + + +  G D  GRP+A      H+P + D++E  R   Y +EK+ + M    + FTI+ D +  G  N D       L+  +  YPE L +LL++ V +     W     F+D+   S+I  V     M  L + I E +L   +GG+
Sbjct:   30 LKRFLRARDLDVDRASNFLLKHLSWRRENIPKGFISESEIQNEIAQKKIFSQGFDKNGRPIAVLFGCRHNPSNRDLNEFKRFAAYILEKLCSRMQGKEEKFTIIADLKGWGYSNCDIRAYIAALDILQNNYPERLGKLLLLHVPYLFMKAWKIICPFIDKNTKSKIIFVEDKNKMTTLLEDIDESQLPEQYGGR 223          
BLAST of EWM23633.1 vs. NCBI_GenBank
Match: gi|1179510639|ref|XP_020677939.1| (random slug protein 5-like isoform X4 [Dendrobium catenatum])

HSP 1 Score: 95.5153 bits (236), Expect = 2.876e-20
Identity = 58/194 (29.90%), Postives = 91/194 (46.91%), Query Frame = 0
Query:   44 LKRFLMGFHTKADKAIPAYEAHLHWRAQNLP---IAKESCLKELQKGRFYFHGMDLEGRPVAYYSLACHDPKHCDISEIMRMMTYQVEKVLAEMPDDVKGFTIVWDTRNTGIKNTDTEFLREFLNFFRAQYPEVLAQLLIVPVGFFQRTMWNTFARFLDERRASRIRMVA---TMEDLRDYISEKELLTTHGGK 231
            LKRFL       D+A      HL WR +N+P   I++     E+ + + +  G D  GRP+A      H+P + D++E  R   Y +EK+ + M    + FTI+ D +  G  N D       L+  +  YPE L +LL++ V +     W     F+D+   S+I  V     M  L + I E +L   +GG+
Sbjct:   30 LKRFLRARDLDVDRASNFLLKHLSWRRENIPKGFISESEIQNEIAQKKIFSQGFDKNGRPIAVLFGCRHNPSNRDLNEFKRFAAYILEKLCSRMQGKEEKFTIIADLKGWGYSNCDIRAYIAALDILQNNYPERLGKLLLLHVPYLFMKAWKIICPFIDKNTKSKIIFVEDKNKMTTLLEDIDESQLPEQYGGR 223          
BLAST of EWM23633.1 vs. NCBI_GenBank
Match: gi|1179510630|ref|XP_020677936.1| (random slug protein 5-like isoform X1 [Dendrobium catenatum])

HSP 1 Score: 95.5153 bits (236), Expect = 3.209e-20
Identity = 58/194 (29.90%), Postives = 91/194 (46.91%), Query Frame = 0
Query:   44 LKRFLMGFHTKADKAIPAYEAHLHWRAQNLP---IAKESCLKELQKGRFYFHGMDLEGRPVAYYSLACHDPKHCDISEIMRMMTYQVEKVLAEMPDDVKGFTIVWDTRNTGIKNTDTEFLREFLNFFRAQYPEVLAQLLIVPVGFFQRTMWNTFARFLDERRASRIRMVA---TMEDLRDYISEKELLTTHGGK 231
            LKRFL       D+A      HL WR +N+P   I++     E+ + + +  G D  GRP+A      H+P + D++E  R   Y +EK+ + M    + FTI+ D +  G  N D       L+  +  YPE L +LL++ V +     W     F+D+   S+I  V     M  L + I E +L   +GG+
Sbjct:   40 LKRFLRARDLDVDRASNFLLKHLSWRRENIPKGFISESEIQNEIAQKKIFSQGFDKNGRPIAVLFGCRHNPSNRDLNEFKRFAAYILEKLCSRMQGKEEKFTIIADLKGWGYSNCDIRAYIAALDILQNNYPERLGKLLLLHVPYLFMKAWKIICPFIDKNTKSKIIFVEDKNKMTTLLEDIDESQLPEQYGGR 233          
BLAST of EWM23633.1 vs. NCBI_GenBank
Match: gi|1179510633|ref|XP_020677937.1| (random slug protein 5-like isoform X2 [Dendrobium catenatum])

HSP 1 Score: 95.5153 bits (236), Expect = 3.562e-20
Identity = 58/194 (29.90%), Postives = 91/194 (46.91%), Query Frame = 0
Query:   44 LKRFLMGFHTKADKAIPAYEAHLHWRAQNLP---IAKESCLKELQKGRFYFHGMDLEGRPVAYYSLACHDPKHCDISEIMRMMTYQVEKVLAEMPDDVKGFTIVWDTRNTGIKNTDTEFLREFLNFFRAQYPEVLAQLLIVPVGFFQRTMWNTFARFLDERRASRIRMVA---TMEDLRDYISEKELLTTHGGK 231
            LKRFL       D+A      HL WR +N+P   I++     E+ + + +  G D  GRP+A      H+P + D++E  R   Y +EK+ + M    + FTI+ D +  G  N D       L+  +  YPE L +LL++ V +     W     F+D+   S+I  V     M  L + I E +L   +GG+
Sbjct:   40 LKRFLRARDLDVDRASNFLLKHLSWRRENIPKGFISESEIQNEIAQKKIFSQGFDKNGRPIAVLFGCRHNPSNRDLNEFKRFAAYILEKLCSRMQGKEEKFTIIADLKGWGYSNCDIRAYIAALDILQNNYPERLGKLLLLHVPYLFMKAWKIICPFIDKNTKSKIIFVEDKNKMTTLLEDIDESQLPEQYGGR 233          
BLAST of EWM23633.1 vs. NCBI_GenBank
Match: gi|831790876|ref|XP_012759531.1| (hypothetical protein SAMD00019534_006440 [Acytostelium subglobosum LB1] >gi|735860163|dbj|GAM17469.1| hypothetical protein SAMD00019534_006440 [Acytostelium subglobosum LB1])

HSP 1 Score: 94.7449 bits (234), Expect = 7.972e-20
Identity = 51/162 (31.48%), Postives = 84/162 (51.85%), Query Frame = 0
Query:   75 IAKESCLKELQKGRFYFHGMDLEGRPVAYYSLACHDPKHCDISEIMRMMTYQVEKVLAEMPDDVKGFTIVWDTRNTGIKNTDTEFLREFLNFFRAQYPEVLAQLLIVPVGFFQRTMWNTFARFLDERRASRIRMVATMEDLRDYISEKELLTTHGGKNTWHF 236
            I +ES   EL+ G+ +F+G D  GRPV       HD    DI E  R   Y +EK  A +P  ++  T+++D  +   KN D E ++  ++ F+  YPE L + LIV   +    +WN    ++D     ++  V + + L +YI  + LL ++GG +TW +
Sbjct:   79 ITEESVENELKTGKSFFYGWDNGGRPVCIIRTRKHDSSQRDIQEAHRYCVYFMEKGKALLPPGIETCTLIFDMTSFSTKNMDYELVKFIVDMFQKYYPESLNKCLIVNAPWIFTGIWNIIKHWMDPITVGKVNFVKS-KQLIEYIPAEHLLASYGGASTWKY 239          
BLAST of EWM23633.1 vs. NCBI_GenBank
Match: gi|1160557537|ref|XP_020434396.1| (cellular retinaldehyde-binding/triple function domain-containing protein [Polysphondylium pallidum PN500] >gi|281208101|gb|EFA82279.1| cellular retinaldehyde-binding/triple function domain-containing protein [Polysphondylium pallidum PN500])

HSP 1 Score: 93.2041 bits (230), Expect = 2.955e-19
Identity = 51/162 (31.48%), Postives = 84/162 (51.85%), Query Frame = 0
Query:   75 IAKESCLKELQKGRFYFHGMDLEGRPVAYYSLACHDPKHCDISEIMRMMTYQVEKVLAEMPDDVKGFTIVWDTRNTGIKNTDTEFLREFLNFFRAQYPEVLAQLLIVPVGFFQRTMWNTFARFLDERRASRIRMVATMEDLRDYISEKELLTTHGGKNTWHF 236
            I +E+   E++ G+ +FHG D EGRPV       HD    D+ E  R   Y +E   A +P  ++  T+++D  +   KN D   ++  ++ F+  YPE LA+ LI+   +    +WN    +LD    S+I  V T + L DYI   +LL  +GG++ + +
Sbjct:   79 ITEETVDNEMKAGKSFFHGSDKEGRPVCIVRTRKHDSSQRDLEEAQRYCVYVMETGKALLPPGIETCTLIFDMSSFSTKNMDYPLVKFMVDMFQKYYPESLARCLILNAPWVFMGVWNIIKHWLDPYTVSKISFVKTRQ-LIDYIPADQLLMAYGGESKFKY 239          
The following BLAST results are available for this feature:
BLAST of EWM23633.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104785|gb|EWM23633.1|0.000e+0100.00CRAL-TRIO domain protein [Nannochloropsis gaditana... [more]
gi|551539036|ref|XP_005758036.1|2.810e-3133.17hypothetical protein EMIHUDRAFT_438954 [Emiliania ... [more]
gi|551572448|ref|XP_005772066.1|3.296e-3133.17hypothetical protein EMIHUDRAFT_444869 [Emiliania ... [more]
gi|1179510636|ref|XP_020677938.1|1.244e-2028.64random slug protein 5-like isoform X3 [Dendrobium ... [more]
gi|1179510642|ref|XP_020677940.1|2.433e-2029.90random slug protein 5-like isoform X5 [Dendrobium ... [more]
gi|1179510639|ref|XP_020677939.1|2.876e-2029.90random slug protein 5-like isoform X4 [Dendrobium ... [more]
gi|1179510630|ref|XP_020677936.1|3.209e-2029.90random slug protein 5-like isoform X1 [Dendrobium ... [more]
gi|1179510633|ref|XP_020677937.1|3.562e-2029.90random slug protein 5-like isoform X2 [Dendrobium ... [more]
gi|831790876|ref|XP_012759531.1|7.972e-2031.48hypothetical protein SAMD00019534_006440 [Acytoste... [more]
gi|1160557537|ref|XP_020434396.1|2.955e-1931.48cellular retinaldehyde-binding/triple function dom... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7051rna7051Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications