EWM23691.1, cds6975 (CDS) Nannochloropsis gaditana

Overview
NameEWM23691.1
Unique Namecds6975
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:194967..195215 +
Alignment locationCM002470.1:195368..196276 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23691.1
Producttransmembrane protein
Orig transcript idgnl|cribi|Naga_100030g13.4188.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:194967..195215 +
CM002470.1supercontigCM002470.1:195368..196276 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0016559peroxisome fission
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005777peroxisome
GO:0005779integral component of peroxisomal membrane
Vocabulary: INTERPRO
TermDefinition
IPR008733PEX11
Homology
BLAST of EWM23691.1 vs. NCBI_GenBank
Match: gi|585104845|gb|EWM23691.1| (transmembrane protein [Nannochloropsis gaditana])

HSP 1 Score: 796.193 bits (2055), Expect = 0.000e+0
Identity = 385/385 (100.00%), Postives = 385/385 (100.00%), Query Frame = 0
Query:    1 MASRVPASCCRRGPYKDNRALTEVATPPCIVRVSPNGAEGLTRPLDLAYWLGLQDSYSTKLPISLKSVVALIRSLEGRDKVTKTIQYACRFLWWYHKTYAPQDKIRGPRFEKMFRASQMARKCFHLFRTLEELEKLQALCADSKSPFWRRNLLMVRAAAMAIYWYYDNTCFLINAKLSSFDQRTAVARDGAAWTLANLISIGLALYDLDRNGKERSRLEDKAAALLKARSSNHVVGGAAEERAMGRDGKVEANGHGHSDAHGRKEMENGTLTASSSSSSSSSSQPQGGDTVAEADVEESLEEMAQASVKRFDLVGDLIRVSCDFLVACNTPGFDLPLHTLGFRLHDGIIGTAGLVSALFAVYKAYPADMGRLRKRRLMRLLPTGP 385
            MASRVPASCCRRGPYKDNRALTEVATPPCIVRVSPNGAEGLTRPLDLAYWLGLQDSYSTKLPISLKSVVALIRSLEGRDKVTKTIQYACRFLWWYHKTYAPQDKIRGPRFEKMFRASQMARKCFHLFRTLEELEKLQALCADSKSPFWRRNLLMVRAAAMAIYWYYDNTCFLINAKLSSFDQRTAVARDGAAWTLANLISIGLALYDLDRNGKERSRLEDKAAALLKARSSNHVVGGAAEERAMGRDGKVEANGHGHSDAHGRKEMENGTLTASSSSSSSSSSQPQGGDTVAEADVEESLEEMAQASVKRFDLVGDLIRVSCDFLVACNTPGFDLPLHTLGFRLHDGIIGTAGLVSALFAVYKAYPADMGRLRKRRLMRLLPTGP
Sbjct:    1 MASRVPASCCRRGPYKDNRALTEVATPPCIVRVSPNGAEGLTRPLDLAYWLGLQDSYSTKLPISLKSVVALIRSLEGRDKVTKTIQYACRFLWWYHKTYAPQDKIRGPRFEKMFRASQMARKCFHLFRTLEELEKLQALCADSKSPFWRRNLLMVRAAAMAIYWYYDNTCFLINAKLSSFDQRTAVARDGAAWTLANLISIGLALYDLDRNGKERSRLEDKAAALLKARSSNHVVGGAAEERAMGRDGKVEANGHGHSDAHGRKEMENGTLTASSSSSSSSSSQPQGGDTVAEADVEESLEEMAQASVKRFDLVGDLIRVSCDFLVACNTPGFDLPLHTLGFRLHDGIIGTAGLVSALFAVYKAYPADMGRLRKRRLMRLLPTGP 385          
BLAST of EWM23691.1 vs. NCBI_GenBank
Match: gi|299470685|emb|CBN78625.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 109.383 bits (272), Expect = 1.197e-23
Identity = 81/304 (26.64%), Postives = 138/304 (45.39%), Query Frame = 0
Query:   53 LQDSYSTKLPISLKSVVALIRSLEGRDKVTKTIQYACRFLWWYHKTYAPQDKIRGPRFEKMFRASQMARKCFHLFRTLEELEKLQAL-------CADSKSPF--WRRNLLMVRAAAMAIYWYYDNTCFLINAKLSSFDQRTAVARDGAAWTLANLISIGLALYDLDRNGKERSRLEDKAAALLKARSSNHVVGGAAEERAMGRDGKVEANGHGHSDAHGRKEMENGTLTASSSSSSSSSSQPQGGDTVAEADVEESLEEMAQASVKRFDLVGDLIRVSCDFLVACNTPGFDLPLHTLGFRLHDG 347
            + D+ + K  +SL+S VA +R L+GRDK TK +QY  RFL W+    + +D     R  K++R +Q +RK F + + L+E+ KL+ +        A S++ F  +   L+ VR  AM  +W +DN  +L   +  +F    A      +W++++ ++I L +  L +  K+R             R +      A  ER    D     NG+G+S+      +E                + + G+   E DV    E + +A+   F     +++ + D   A N  G D P   LG +L+DG
Sbjct:   12 IDDALAVKEAVSLESFVATLRKLDGRDKFTKLMQYGARFLAWW---LSARDPDLSQRVFKLYRTTQRSRKAFRMLKILDEVVKLRQILRTAGGNSASSRTAFLGYAETLMSVRCLAMGAFWTFDNLNYLTITETVNFGVAKATRGFSRSWSVSSALAIMLGIDSLRKTEKKR-------------REALSAYAAAVSERIAPPDRCGHCNGNGNSNGESYGVVER--------------QRQRDGEGDGEGDVAGLREALRRANADHFKSWLMVLKGALDLTCAVNVTGMDFPKRLLGRKLNDG 285          
BLAST of EWM23691.1 vs. NCBI_GenBank
Match: gi|325184731|emb|CCA19221.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 87.8113 bits (216), Expect = 3.821e-16
Identity = 60/207 (28.99%), Postives = 94/207 (45.41%), Query Frame = 0
Query:   44 PLDLAYWLGLQDSYSTKLPISLKSVVALIRSLEGRDKVTKTIQYACRFLWWYHKTYAPQDKIRGPRFEKMFRASQMARKCFHLFRTLEELEKLQALCADSKSPFWRRNLLMVRAAAMAIYWYYDNTCFLINAKLSSFDQRTAVARDGAAWTLAN----LISIGLALYDLDRNGKERSRL------------EDKAAALLKARSSNHV 234
            P D A+W                +++++  +LEGRDK+TK +QY  R L WY   +A      G  F  +++A+Q ARK F L ++     KL  +     +  + RNL +++   M  +  YDN  FL  A +   D+  AV + G  W +AN    L ++ L   ++D     R RL            + +  ALL+ RS N V
Sbjct:    6 PEDRAFW---------------NAIISVASTLEGRDKLTKLLQYGSRALSWY--CFASHTNKMGMGFSNLYKATQQARKVFRLGKSALLYAKLGTILEKKDTSQYERNLELIQQCGMMGFLAYDNIIFLSKANVVKLDEGKAVRQGGLLWFIANVAAFLRTVNLIKLNIDEENANRERLSFLSNADQTEVSQAQLDALLQTRSKNLV 195          
BLAST of EWM23691.1 vs. NCBI_GenBank
Match: gi|146165094|ref|XP_001014394.2| (peroxisomal biogenesis factor 11 [Tetrahymena thermophila SB210] >gi|146145590|gb|EAR94149.2| peroxisomal biogenesis factor 11 [Tetrahymena thermophila SB210])

HSP 1 Score: 86.2705 bits (212), Expect = 6.878e-16
Identity = 49/150 (32.67%), Postives = 77/150 (51.33%), Query Frame = 0
Query:   69 VALIRSLEGRDKVTKTIQYACRFLWWYHKTYAPQDKIRGPRFEKMFRASQMARKCFHLFRTLEELEKLQALCADSKSPFWRRNLLMVRAAAMAIYWYYDNTCFLINAKLSSFDQRTAVARDGAAWTLANLISIGLALYDLDRNGKERSRL 218
            +A I   EGRDK  K IQYA RFL W+      ++K    RF  +F   + ARK F LF+T+ E++K+Q L     +    + L ++  A   +YWY+DN   L + K    D +    +    W +A L+SI   + +L ++ +E + L
Sbjct:    5 IAWINKTEGRDKFCKAIQYASRFLKWHFTN--TENKELAARFNGLFNGMKDARKLFRLFKTINEIQKIQELLNKKDNDEINKALNILVRAFFGLYWYFDNLVILKSVKFIHGDPKPDNKKGSTCWLIALLLSIAQNIRNLLKSLQEEANL 152          
BLAST of EWM23691.1 vs. NCBI_GenBank
Match: gi|1173946907|gb|OQR95375.1| (hypothetical protein THRCLA_07924 [Thraustotheca clavata])

HSP 1 Score: 82.4185 bits (202), Expect = 2.280e-14
Identity = 76/295 (25.76%), Postives = 124/295 (42.03%), Query Frame = 0
Query:   68 VVALIRSLEGRDKVTKTIQYACRFLWWYHKTYAPQDKIRGPRFEKMFRASQMARKCFHLFRTLEELEKLQALCADSKSPFWRRNLLMVRAAAMAIYWYYDNTCFLINAKLSSFDQRTAVARDGAAWTLANLISIGLALYDLDRNGKERSRLEDKAAALLKARSSNHVVGGAAEERAMGRDGKVEANGHGHSDAHGRKEMENGTLTASSSSSSSSSSQPQGGDTVAEADVEESLEEMAQASVKRFDLVGDLIRVSCDFLVACNTPGFDLPLHTLGFRLHDGIIGTAGLVSALFAVY 362
            +V L   LEGRDK+TK  QYA R L ++  T  P+  + G +   +F+A Q ARK F + ++     K+ A   + K   +++NL +++   M  ++ +DN  F  +AK+   D   A+   G  W  AN+ +  L    L +   + ++L                                          H   E +   +T SS ++     Q    D V  A  ++SL                +++ +CD +V+ NT G  LP   LG +L+DGIIG  G +SA   +Y
Sbjct:    4 LVTLSNDLEGRDKLTKWTQYASRALAYWVLTADPKSPV-GQQLTALFKAVQSARKAFRVGKSFNYPAKITATIDNQKLDPFQKNLQLIQDLGMMTFFAFDNAAFFGSAKVLPIDSAQAMKNGGYFWFCANIAAFILNFQALQKEADKEAKL------------------------------------------HQILETKKAEMTLSSETADDLLKQI---DAVQSARWKKSLA---------------VLKTTCDLIVSSNTAGVRLPERILGKKLNDGIIGIVGCISASVVLY 237          
BLAST of EWM23691.1 vs. NCBI_GenBank
Match: gi|954192863|gb|KRX05614.1| (hypothetical protein PPERSA_09754 [Pseudocohnilembus persalinus])

HSP 1 Score: 81.2629 bits (199), Expect = 5.140e-14
Identity = 68/301 (22.59%), Postives = 119/301 (39.53%), Query Frame = 0
Query:   65 LKSVVALIRSLEGRDKVTKTIQYACRFLWWYHKTYAPQDKIRGPRFEKMFRASQMARKCFHLFRTLEELEKLQALCADSKSPFWRRNLLMVRAAAMAIYWYYDNTCFLINAKLSSFDQRTAVARDGAAWTLANLISIGLALYDLDRNGKERSRLEDKAAALLKARSSNHVVGGAAEERAMGRDGKVEANGHGHSDAHGRKEMENGTLTASSSSSSSSSSQPQGGDTVAEADVEESLEEMAQASVKRFDLVGDLIRVSCDFLVACNTPGFDLPLHTLGFRLHDGIIGTAGLVSALFAVYKAY 365
            L  V+ ++   +GRDK+ K IQ  C++L WY   Y+  +K    R   +    + ARK F LF+++ E+EKL  L         ++ L ++  A  A YW++DN   LI  K    ++  A       W    L +   ALY +++N +   +L+ +A+                           + NG G                                      ++++ +E + Q ++ +F     +++ + D L A    G  +    +G   + G IG  GLVSAL A Y+ +
Sbjct:   11 LTKVIGILNKTDGRDKLGKAIQNLCKYLNWY---YSTNNKDLADRMIGLSNGMRDARKLFRLFKSMNEIEKLIQLSQTDSPDVVKKALDVLARAFFAGYWFFDNLVILITVKFLKSNKEKATQTSNTFWFFGILFTQIQALYQINQNMQSLVQLKIEAS---------------------------KGNGQGE-------------------------------------EIQKKIENLKQNNITQFL---KIVQCTGDILAAG--TGSKIFERLVGKTPNSGTIGLGGLVSALIAGYQMF 239          
BLAST of EWM23691.1 vs. NCBI_GenBank
Match: gi|675171419|ref|XP_008894594.1| (hypothetical protein PPTG_03656 [Phytophthora parasitica INRA-310] >gi|567984157|gb|ETL34532.1| hypothetical protein L916_13256 [Phytophthora parasitica] >gi|568043755|gb|ETM41023.1| hypothetical protein L914_13167 [Phytophthora parasitica] >gi|568106084|gb|ETN20720.1| hypothetical protein PPTG_03656 [Phytophthora parasitica INRA-310] >gi|970653377|gb|KUF91860.1| 50S ribosomal protein L19 [Phytophthora nicotianae] >gi|970664853|gb|KUG01661.1| Peroxisomal membrane protein 11 [Phytophthora nicotianae])

HSP 1 Score: 80.8777 bits (198), Expect = 1.127e-13
Identity = 51/166 (30.72%), Postives = 82/166 (49.40%), Query Frame = 0
Query:   59 TKLPISLKSVVALIRSLEGRDKVTKTIQYACRFLWWYHKTYAPQDKIRGPRFEKMFRASQMARKCFHLFRTLEELEKLQALCADSKSPFWRRNLLMVRAAAMAIYWYYDNTCFLINAKLSSFDQRTAVARDGAAWTLANLISIGLALYDLDRNGKERSRLEDKAAA 224
            TK P+SL + + L   LEGRDK++K +QY  R L +Y  +  P+  + G R   +++  Q +RK F L +++   +KLQ L +       +R L  ++   M  Y+  DN  F   AK+  FD      R G  W  AN+     AL  L+ + ++   + D  A+
Sbjct:    3 TKAPLSLDAFIKLAFCLEGRDKLSKMLQYGSRALAFYVLSADPKSDV-GQRLHALYKVMQQSRKAFRLGKSVTYYKKLQTLSSSKSLTETQRYLQFIQNLGMLGYFLADNVAFASKAKVLRFDADDLARRGGVMWFCANVAGFFNALESLNADVEKEKCVRDILAS 167          
BLAST of EWM23691.1 vs. NCBI_GenBank
Match: gi|566018097|gb|ETI41008.1| (hypothetical protein F443_13717 [Phytophthora parasitica P1569] >gi|567955468|gb|ETK81101.1| hypothetical protein L915_13376 [Phytophthora parasitica] >gi|568013613|gb|ETL87790.1| hypothetical protein L917_13081 [Phytophthora parasitica] >gi|570321731|gb|ETO69679.1| hypothetical protein F444_13775 [Phytophthora parasitica P1976] >gi|570945525|gb|ETP10782.1| hypothetical protein F441_13646 [Phytophthora parasitica CJ01A1] >gi|570977302|gb|ETP38932.1| hypothetical protein F442_13568 [Phytophthora parasitica P10297])

HSP 1 Score: 80.8777 bits (198), Expect = 1.127e-13
Identity = 51/166 (30.72%), Postives = 82/166 (49.40%), Query Frame = 0
Query:   59 TKLPISLKSVVALIRSLEGRDKVTKTIQYACRFLWWYHKTYAPQDKIRGPRFEKMFRASQMARKCFHLFRTLEELEKLQALCADSKSPFWRRNLLMVRAAAMAIYWYYDNTCFLINAKLSSFDQRTAVARDGAAWTLANLISIGLALYDLDRNGKERSRLEDKAAA 224
            TK P+SL + + L   LEGRDK++K +QY  R L +Y  +  P+  + G R   +++  Q +RK F L +++   +KLQ L +       +R L  ++   M  Y+  DN  F   AK+  FD      R G  W  AN+     AL  L+ + ++   + D  A+
Sbjct:    3 TKAPLSLDAFIKLAFCLEGRDKLSKMLQYGSRALAFYVLSADPKSDV-GQRLHALYKVMQQSRKAFRLGKSVTYYKKLQTLSSSKSLTETQRYLQFIQNLGMLGYFLADNVAFASKAKVLRFDADDLARRGGVMWFCANVAGFFNALESLNADVEKEKCVRDILAS 167          
BLAST of EWM23691.1 vs. NCBI_GenBank
Match: gi|813115146|ref|XP_012195417.1| (hypothetical protein SPRG_01660 [Saprolegnia parasitica CBS 223.65] >gi|641539986|gb|KDO33781.1| hypothetical protein SPRG_01660 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 80.1073 bits (196), Expect = 1.433e-13
Identity = 48/158 (30.38%), Postives = 80/158 (50.63%), Query Frame = 0
Query:   67 SVVALIRSLEGRDKVTKTIQYACRFLWWYHKTYAPQDKIRGPRFEKMFRASQMARKCFHLFRTLEELEKLQALCADSKSPFWRRNLLMVRAAAMAIYWYYDNTCFLINAKLSSFDQRTAVARDGAAWTLANLISIGLALYDLDRNGKERSRLEDKAAA 224
            +++AL   LEGRDK+TK  QY+ R L +Y     P+  + G +   +F+A+Q ARK F + ++     K+ A   +     ++RNL +V+   M  ++ +DN  F    K+ + D   A+ R G  W  AN+    LA   L +   + + L +  AA
Sbjct:    4 TLLALSNDLEGRDKLTKLTQYSTRALAYYILAADPKS-VLGQQLTALFKATQSARKAFRVGKSFNYGNKISATLHNKAVAPYQRNLQLVQDVGMCTFFLFDNAAFFGANKVLNVDAAEAMKRGGYFWFCANVAGFVLAYEALQKETDKETDLHNTLAA 160          
BLAST of EWM23691.1 vs. NCBI_GenBank
Match: gi|695452132|ref|XP_009535899.1| (hypothetical protein PHYSODRAFT_549873 [Phytophthora sojae] >gi|348669443|gb|EGZ09266.1| hypothetical protein PHYSODRAFT_549873 [Phytophthora sojae])

HSP 1 Score: 80.4925 bits (197), Expect = 1.462e-13
Identity = 49/162 (30.25%), Postives = 80/162 (49.38%), Query Frame = 0
Query:   59 TKLPISLKSVVALIRSLEGRDKVTKTIQYACRFLWWYHKTYAPQDKIRGPRFEKMFRASQMARKCFHLFRTLEELEKLQALCADSKSPFWRRNLLMVRAAAMAIYWYYDNTCFLINAKLSSFDQRTAVARDGAAWTLANLISIGLALYDLDRNGKERSRLED 220
            TK P+SL + + L   LEGRDK++K +QY  R L +Y  +  P+  + G R   +++  Q +RK F L +++   +KLQAL  +      +  L  V+   M  Y+  DN  F   AK+  FD      + G  W  AN+     A+  L+ + ++   + D
Sbjct:    3 TKAPVSLDAFIKLAFCLEGRDKLSKMLQYGSRALAFYILSADPKSDV-GQRLHALYKVMQQSRKAFRLGKSVTYYKKLQALSGNKSLSEGQSYLQFVQNVGMLGYFISDNVAFASKAKVLRFDAEELSKKGGILWFCANVAGFFNAVESLNADVEKEKCVRD 163          
The following BLAST results are available for this feature:
BLAST of EWM23691.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104845|gb|EWM23691.1|0.000e+0100.00transmembrane protein [Nannochloropsis gaditana][more]
gi|299470685|emb|CBN78625.1|1.197e-2326.64conserved unknown protein [Ectocarpus siliculosus][more]
gi|325184731|emb|CCA19221.1|3.821e-1628.99conserved hypothetical protein [Albugo laibachii N... [more]
gi|146165094|ref|XP_001014394.2|6.878e-1632.67peroxisomal biogenesis factor 11 [Tetrahymena ther... [more]
gi|1173946907|gb|OQR95375.1|2.280e-1425.76hypothetical protein THRCLA_07924 [Thraustotheca c... [more]
gi|954192863|gb|KRX05614.1|5.140e-1422.59hypothetical protein PPERSA_09754 [Pseudocohnilemb... [more]
gi|675171419|ref|XP_008894594.1|1.127e-1330.72hypothetical protein PPTG_03656 [Phytophthora para... [more]
gi|566018097|gb|ETI41008.1|1.127e-1330.72hypothetical protein F443_13717 [Phytophthora para... [more]
gi|813115146|ref|XP_012195417.1|1.433e-1330.38hypothetical protein SPRG_01660 [Saprolegnia paras... [more]
gi|695452132|ref|XP_009535899.1|1.462e-1330.25hypothetical protein PHYSODRAFT_549873 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6991rna6991Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications