EWM23665.1, cds6966 (CDS) Nannochloropsis gaditana

Overview
NameEWM23665.1
Unique Namecds6966
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:171658..171682 -
Alignment locationCM002470.1:171450..171515 -
Alignment locationCM002470.1:171254..171372 -
Alignment locationCM002470.1:171044..171178 -
Alignment locationCM002470.1:170198..170782 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23665.1
Productderlin-like protein
Orig transcript idgnl|cribi|Naga_100030g4.4162.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:171658..171682 -
CM002470.1supercontigCM002470.1:171450..171515 -
CM002470.1supercontigCM002470.1:171254..171372 -
CM002470.1supercontigCM002470.1:171044..171178 -
CM002470.1supercontigCM002470.1:170198..170782 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR007599DER1
Homology
BLAST of EWM23665.1 vs. NCBI_GenBank
Match: gi|585104819|gb|EWM23665.1| (derlin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 625.165 bits (1611), Expect = 0.000e+0
Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 0
Query:    1 MPEDVEVSWYEDMFDWANVVPCIAMDGVATVTGIASSSLVPLQQVAGCFLGKVCVRRAHKSVKWAAATPQEWFRNLPPITKAYLVAAFASTILSHFGVVGVRTLVWDVAGLKRFQLWRLITPFTYFGDLGMQFVMQLFMLVQYSSRYELSPFNTGGGGSSADYLLMLVFGAAALLLLNCYLGYYVLGGSLVSMVTYLWSCREPHALVSFWGFTLPAMYLPWALAALSFLMGGTSAMISPLMGIGVGHLYYFLIETLPLEYDVDLLKTPGFFVEAFEGPGERRGGRGEAAGPEGAGQSDWGTGGRVLGGG 309
            MPEDVEVSWYEDMFDWANVVPCIAMDGVATVTGIASSSLVPLQQVAGCFLGKVCVRRAHKSVKWAAATPQEWFRNLPPITKAYLVAAFASTILSHFGVVGVRTLVWDVAGLKRFQLWRLITPFTYFGDLGMQFVMQLFMLVQYSSRYELSPFNTGGGGSSADYLLMLVFGAAALLLLNCYLGYYVLGGSLVSMVTYLWSCREPHALVSFWGFTLPAMYLPWALAALSFLMGGTSAMISPLMGIGVGHLYYFLIETLPLEYDVDLLKTPGFFVEAFEGPGERRGGRGEAAGPEGAGQSDWGTGGRVLGGG
Sbjct:    1 MPEDVEVSWYEDMFDWANVVPCIAMDGVATVTGIASSSLVPLQQVAGCFLGKVCVRRAHKSVKWAAATPQEWFRNLPPITKAYLVAAFASTILSHFGVVGVRTLVWDVAGLKRFQLWRLITPFTYFGDLGMQFVMQLFMLVQYSSRYELSPFNTGGGGSSADYLLMLVFGAAALLLLNCYLGYYVLGGSLVSMVTYLWSCREPHALVSFWGFTLPAMYLPWALAALSFLMGGTSAMISPLMGIGVGHLYYFLIETLPLEYDVDLLKTPGFFVEAFEGPGERRGGRGEAAGPEGAGQSDWGTGGRVLGGG 309          
BLAST of EWM23665.1 vs. NCBI_GenBank
Match: gi|1214674670|gb|OWY96814.1| (hypothetical protein PHMEG_00032823 [Phytophthora megakarya])

HSP 1 Score: 182.57 bits (462), Expect = 7.944e-53
Identity = 111/252 (44.05%), Postives = 143/252 (56.75%), Query Frame = 0
Query:   66 AATPQEWFRNLPPITKAYLVAAFASTILSHFGVVGVRTLVWDVAGL-KRFQLWRLITPFTYFGDLGMQFVMQLFMLVQYSSRYELSPFNTGGGGSSADYLLMLVFGAAALLLLNCYLGYYVLGGSLVSMVTYLWSCREPHALVSFWGFTLPAMYLPWALAALSFLMGGTSAMISPLMGIGVGHLYYFLIETLPLEYDVDLLKTPGFFVEAFEGPGE---------RRGGRGEAAGPEGAGQSDWGTGGRVLG 307
            A + + W+  LP +T+ YL   F ST+LS  G +  ++L  D   + +RFQLWRL T F Y G     F+MQL +L QYSSR E  PF  GGGG +ADY  ML FGAA L ++  ++    LG SL+ M+ Y+WS R P A V+ WGF+   +YLPWAL A + L+GG   M   + G+  GHLYYFL+E LP     +LL+TP  F+  F  P            RG  G  A P G G   WGT GR LG
Sbjct:    2 AGSIEAWYYGLPYVTRFYLSVCFGSTVLSTLGFLNPQSLYLDFDLVWQRFQLWRLTTCFMYLGSFSFPFLMQLMILTQYSSRLEEDPF-PGGGGPTADYAFMLFFGAAVLWVVGIFMSIPFLGTSLIFMIVYVWSRRNPTAPVAIWGFSFEGLYLPWALIAFTVLVGGNPIM--DIFGVVAGHLYYFLLEVLPATKGWNLLQTPAVFINMFPSPQVAGGAVPIIGARGAAGRVAVP-GVGGYAWGT-GRPLG 248          
BLAST of EWM23665.1 vs. NCBI_GenBank
Match: gi|1173954176|gb|OQS01660.1| (Der1-like family [Achlya hypogyna])

HSP 1 Score: 179.489 bits (454), Expect = 1.255e-51
Identity = 100/249 (40.16%), Postives = 144/249 (57.83%), Query Frame = 0
Query:   67 ATPQEWFRNLPPITKAYLVAAFASTILSHFGVVGVRTLVWDVA-GLKRFQLWRLITPFTYFGDLGMQFVMQLFMLVQYSSRYELSPFNTGGGGSSADYLLMLVFGAAALLLLNCYLGYYVLGGSLVSMVTYLWSCREPHALVSFWGFTLPAMYLPWALAALSFLMGGTSAMISPLMGIGVGHLYYFLIETLPLEYDVDLLKTPGFFVEAFEGPGERR-----GGRGEAAGPEGAGQS--DWGTGGRVLG 307
            ++P+ W+  LP IT+AYL   FA+T LS FG++  R++  D+     +F  WRLIT F Y G     F++ L +L QY SR E  PF   GGG +AD+  M++ GA+ L ++  ++GY+ LG  ++ M+ Y+WS + P  +VSFWGF   A+Y PWA+ A + L G     +  L G+  GH+YYFL+E LP    + LL+TP   +  F  P E R        G+ AG E  G S  +WG+ GR LG
Sbjct:    2 SSPEAWYNGLPRITRAYLTTCFAATCLSQFGMLNPRSIYLDLELVFYKFHFWRLITCFCYVGKFSFHFLVCLLLLGQYGSRLEADPF-VAGGGPTADFAFMMLCGASVLWIVGGFMGYFFLGEPMIFMILYMWSRKNPTQIVSFWGFKFEALYFPWAMIAFTLLTGNDP--LPQLAGLFAGHVYYFLLEILPNTKGITLLQTPQVLINCF--PSEARPVYGAAPAGQRAGAEATGPSRYNWGS-GRTLG 244          
BLAST of EWM23665.1 vs. NCBI_GenBank
Match: gi|953487467|emb|CEG48295.1| (Predicted membrane protein [Plasmopara halstedii])

HSP 1 Score: 177.948 bits (450), Expect = 5.543e-51
Identity = 110/254 (43.31%), Postives = 141/254 (55.51%), Query Frame = 0
Query:   66 AATPQEWFRNLPPITKAYLVAAFASTILSHFGVVGVRTLVWDVAGL-KRFQLWRLITPFTYFGDLGMQFVMQLFMLVQYSSRYELSPFNTGGGGSSADYLLMLVFGAAALLLLNCYLGYYVLGGSLVSMVTYLWSCREPHALVSFWGFTLPAMYLPWALAALSFLMGGTSAMISPLMGIGVGHLYYFLIETLPLEYDVDLLKTPGFFVEAFEGPGER---------RGGRGEAAGPEGAGQSDWGTGGRVLGGG 309
            A + + W+  LP +T+ YL   F ST+LS  G +  +TL  D+  + +RFQLWRL T F Y G     F+MQL +L  YSSR E  PF +GGG  +ADY  ML FGA  L ++  ++    LG SL+ M+ Y+WS R P A V+ WGF    +YLPWAL A + L+GG   M   + G+  GHLYYFL+E LP     +LL+TP  F   F  P            RG  G    P GAG   WGT GR LG G
Sbjct:    2 AGSIEAWYYGLPYVTRFYLSVCFGSTLLSALGFLNPQTLYLDLDLVWQRFQLWRLATCFMYLGGFSFPFLMQLMILTNYSSRLEEDPFPSGGG-PTADYAFMLFFGAVVLWVIALFMSIPFLGTSLIFMIVYVWSRRNPTAPVAIWGFRFDGLYLPWALIAFTVLVGGNPIM--DIFGVVAGHLYYFLLEVLPATKGWNLLQTPTLFSNLFPSPQVTAGGVPIIGARGAAGRGVAP-GAGGYAWGT-GRPLGSG 250          
BLAST of EWM23665.1 vs. NCBI_GenBank
Match: gi|813148998|ref|XP_012200146.1| (hypothetical protein SPRG_19921 [Saprolegnia parasitica CBS 223.65] >gi|641535340|gb|KDO29258.1| hypothetical protein SPRG_19921 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 174.096 bits (440), Expect = 1.562e-49
Identity = 95/253 (37.55%), Postives = 142/253 (56.13%), Query Frame = 0
Query:   67 ATPQEWFRNLPPITKAYLVAAFASTILSHFGVVGVRTLVWDVA-GLKRFQLWRLITPFTYFGDLGMQFVMQLFMLVQYSSRYELSPFNTGGGGSSADYLLMLVFGAAALLLLNCYLGYYVLGGSLVSMVTYLWSCREPHALVSFWGFTLPAMYLPWALAALSFLMGGTSAMISPLMGIGVGHLYYFLIETLPLEYDVDLLKTPGFFVEAFEG---------PGERRGGRGEAAGPEGAGQSDWGTGGRVLGGG 309
            ++P+ W+  LP +T+ YL   FA+T L+ FG++  R++  D+   + +F +WRL+T F Y G     F++ L +L QY SR E  PF   GGG +AD+  M++ GA+ L ++   +GY  LG  ++ M+ Y+WS + P  LVSFWGF   A+Y PWA+ A + L G     +  L G+  GH+YYF +E LP    + LLKTP   +  F           P ++R G  EA GP    + +WG+ GR LG  
Sbjct:    2 SSPEAWYNGLPQVTRFYLTTCFAATCLTQFGMLNPRSIYLDLELVVYKFHIWRLVTCFCYVGKFSFHFLVCLLLLGQYGSRLEADPF-VAGGGPTADFAFMMLCGASVLWVVGALMGYIFLGEPMIFMILYMWSRKNPTQLVSFWGFKFEALYFPWAMIAFTLLTGNDP--LPQLAGLFAGHVYYFFLEILPNTKGITLLKTPQILINCFPSTARPVYGAPPAQQRAG-AEATGPS---RYNWGS-GRTLGSN 246          
BLAST of EWM23665.1 vs. NCBI_GenBank
Match: gi|669154690|ref|XP_008612907.1| (hypothetical protein SDRG_08788 [Saprolegnia diclina VS20] >gi|530735442|gb|EQC33684.1| hypothetical protein SDRG_08788 [Saprolegnia diclina VS20])

HSP 1 Score: 174.096 bits (440), Expect = 1.817e-49
Identity = 95/251 (37.85%), Postives = 142/251 (56.57%), Query Frame = 0
Query:   67 ATPQEWFRNLPPITKAYLVAAFASTILSHFGVVGVRTLVWDVA-GLKRFQLWRLITPFTYFGDLGMQFVMQLFMLVQYSSRYELSPFNTGGGGSSADYLLMLVFGAAALLLLNCYLGYYVLGGSLVSMVTYLWSCREPHALVSFWGFTLPAMYLPWALAALSFLMGGTSAMISPLMGIGVGHLYYFLIETLPLEYDVDLLKTPGFFVEAFEG---------PGERRGGRGEAAGPEGAGQSDWGTGGRVLG 307
            ++P+ W+  LP +T+ YL   FA+T L+ FG++  R++  D+   + +F +WRL+T F Y G     F++ L +L QY SR E  PF   GGG +AD+  M++ GA+ L ++   +GY  LG  ++ M+ Y+WS + P  LVSFWGF   A+Y PWA+ A + L G     +  L G+  GH+YYF +E LP    + LLKTP   +  F           P ++R G  EA GP    + +WG+ GR LG
Sbjct:    2 SSPEAWYNGLPQVTRFYLTTCFAATCLTQFGMLNPRSIYLDLELVVYKFHIWRLVTCFCYVGKFSFHFLVCLLLLGQYGSRLEADPF-VAGGGPTADFAFMMLCGASVLWVVGALMGYIFLGEPMIFMILYMWSRKNPTQLVSFWGFKFEALYFPWAMIAFTLLTGNDP--LPQLAGLFAGHVYYFFLEILPNTKGITLLKTPQILINCFPSTARPVYGAPPAQQRAG-AEATGPS---RYNWGS-GRTLG 244          
BLAST of EWM23665.1 vs. NCBI_GenBank
Match: gi|695373163|ref|XP_009514983.1| (hypothetical protein PHYSODRAFT_321455 [Phytophthora sojae] >gi|348687894|gb|EGZ27708.1| hypothetical protein PHYSODRAFT_321455 [Phytophthora sojae])

HSP 1 Score: 173.326 bits (438), Expect = 3.521e-49
Identity = 109/252 (43.25%), Postives = 143/252 (56.75%), Query Frame = 0
Query:   66 AATPQEWFRNLPPITKAYLVAAFASTILSHFGVVGVRTLVWDVAGL-KRFQLWRLITPFTYFGDLGMQFVMQLFMLVQYSSRYELSPFNTGGGGSSADYLLMLVFGAAALLLLNCYLGYYVLGGSLVSMVTYLWSCREPHALVSFWGFTLPAMYLPWALAALSFLMGGTSAMISPLMGIGVGHLYYFLIETLPLEYDVDLLKTPGFFVEAFEGPGERRGG---------RGEAAGPEGAGQSDWGTGGRVLG 307
            A + + W+  LP +T+ YL   F ST+LS  G +  ++L  D   + +RFQLWRL T F + G     F+MQL +L  YSSR E  PF  GGGG +ADY  ML FGA+ L ++  ++G   LG SL+ M+ Y+WS R P A V+ WGF    +YLPWAL A + L+GG   M   + G+  GHLYYFL+E LP     +LL+TP  F   F  P    GG          G  A P+G G + WGT GR LG
Sbjct:    3 AGSIEAWYYGLPYVTRFYLSVCFGSTLLSTLGFLNPQSLYLDFDLVWQRFQLWRLTTCFMFLGSFSFPFLMQLMILTNYSSRLEEDPF-PGGGGPTADYAFMLFFGASVLWVVAFFMGIPFLGTSLIFMIVYVWSRRNPTAPVAIWGFRFEGLYLPWALIAFTVLVGGNPIM--DIFGVIAGHLYYFLLEVLPATKGWNLLQTPAVFANLFPSPQVAVGGVPIIGARGAAGRGAVPQGGGYA-WGT-GRPLG 249          
BLAST of EWM23665.1 vs. NCBI_GenBank
Match: gi|635370628|emb|CCI41219.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 177.563 bits (449), Expect = 5.980e-49
Identity = 101/248 (40.73%), Postives = 142/248 (57.26%), Query Frame = 0
Query:   59 HKSVKWAAATPQEWFRNLPPITKAYLVAAFASTILSHFGVVGVRTLVWDVA-GLKRFQLWRLITPFTYFGDLGMQFVMQLFMLVQYSSRYELSPFNTGGGGSSADYLLMLVFGAAALLLLNCYLGYYVLGGSLVSMVTYLWSCREPHALVSFWGFTLPAMYLPWALAALSFLMGGTSAMISPLMGIGVGHLYYFLIETLPLEYDVDLLKTPGFFVEAFEGPGERRGGRGEAAGPEGAGQSDWGTGGRV 305
            H  +   A + + W+ ++P IT+ YL   F +T LS FG +  +TL  D    L+RFQ+WRL+T F Y G     F+MQL +LV YSSR E +PF  GGGG++ADY  ML FGA  +     +L +  LG +L+ M+ Y+WS R     V+ WGF    +YLPWAL A + L+GG   M   + G+  GHLYYFL+E LP      +L+TP  F++ F  P        ++A PE   +  WG+G R+
Sbjct:  176 HIELLDMAQSIESWYYSMPEITRFYLSVIFLTTALSTFGFLNPKTLYLDFDLVLERFQIWRLVTCFMYLGGFSFNFLMQLMILVNYSSRLEEAPFQ-GGGGATADYAFMLFFGAVIMWGAAFFLDFPFLGPALIFMIVYVWSRRNATTPVAIWGFQFEGLYLPWALIAFTVLIGGNPIM--DICGVVAGHLYYFLLEVLPNLKGWRVLQTPQIFIKLF--PPAIHPAAPQSARPESGPRYTWGSGRRL 418          
BLAST of EWM23665.1 vs. NCBI_GenBank
Match: gi|325182042|emb|CCA16495.1| (Der1like family putative [Albugo laibachii Nc14])

HSP 1 Score: 171.4 bits (433), Expect = 1.321e-48
Identity = 97/241 (40.25%), Postives = 136/241 (56.43%), Query Frame = 0
Query:   66 AATPQEWFRNLPPITKAYLVAAFASTILSHFGVVGVRTLVWDVAGL-KRFQLWRLITPFTYFGDLGMQFVMQLFMLVQYSSRYELSPFNTGGGGSSADYLLMLVFGAAALLLLNCYLGYYVLGGSLVSMVTYLWSCREPHALVSFWGFTLPAMYLPWALAALSFLMGGTSAMISPLMGIGVGHLYYFLIETLPLEYDVDLLKTPGFFVEAFEGPGERRGGRGEAAGPEGAGQSDWGTGGRV 305
            A + + W+ ++P IT+ YL   F +T LS FGV+  + L  D   + +RFQ+WRL+T F Y G      +MQL +LV YSSR E +PF  GGGG +ADY  ML FGA  + +   +L +  LG +L+ M+ Y+WS R     V+ WGF    +YLPWAL A + L+GG   M   + G+  GHLYYFL+E LP      +L+TP  F++ F             A P+   Q  WG+G R+
Sbjct:    2 ARSIESWYYSMPEITRFYLSVIFMTTALSTFGVLNPKNLYLDYELVWERFQIWRLVTCFIYLGGFSFNILMQLMILVNYSSRLEEAPFQ-GGGGPTADYAFMLFFGAVVMWITAIFLDFPFLGPALIFMIVYVWSRRNATTPVAIWGFQFEGLYLPWALIAFTVLIGGNPIM--DICGVVAGHLYYFLLEVLPELKGWRVLQTPQIFIKLFP-------PAIHPAAPQSGPQYTWGSGRRL 232          
BLAST of EWM23665.1 vs. NCBI_GenBank
Match: gi|568016432|gb|ETL90609.1| (hypothetical protein L917_10745 [Phytophthora parasitica])

HSP 1 Score: 171.785 bits (434), Expect = 1.430e-48
Identity = 106/251 (42.23%), Postives = 137/251 (54.58%), Query Frame = 0
Query:   66 AATPQEWFRNLPPITKAYLVAAFASTILSHFGVVGVRTLVWDVAGL-KRFQLWRLITPFTYFGDLGMQFVMQLFMLVQYSSRYELSPFNTGGGGSSADYLLMLVFGAAALLLLNCYLGYYVLGGSLVSMVTYLWSCREPHALVSFWGFTLPAMYLPWALAALSFLMGGTSAMISPLMGIGVGHLYYFLIETLPLEYDVDLLKTPGFFVEAFEGPGERRGG--------RGEAAGPEGAGQSDWGTGGRVLG 307
            A + + W+  LP +T+ YL   F ST+LS  G +  ++L  D   + +RFQLWRL T F + G     F+MQL +L  YSSR E  PF  GGGG +ADY  ML FGAA L ++  ++    LG SL+ M+ Y+WS R P A V+ WGF    +YLPWAL A + L+GG   M   + G+  GHLYYFL+E LP     +LL+TP  F   F  P    GG                G G   WGT GR LG
Sbjct:    2 AGSIEAWYYGLPYVTRFYLSVCFGSTLLSTLGFLNPQSLYLDFDLVWQRFQLWRLTTCFMFLGSFSFPFLMQLMILTNYSSRLEEDPF-PGGGGPTADYAFMLFFGAAVLWVIAFFMSIPFLGTSLIFMIVYVWSRRNPTAPVAIWGFRFDGLYLPWALIAFTVLVGGNPIM--DVFGVIAGHLYYFLLEVLPATKGWNLLQTPAVFTNLFPSPQVAAGGVPIIGARGAARRGAVPGTGGYAWGT-GRPLG 248          
The following BLAST results are available for this feature:
BLAST of EWM23665.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104819|gb|EWM23665.1|0.000e+0100.00derlin-like protein [Nannochloropsis gaditana][more]
gi|1214674670|gb|OWY96814.1|7.944e-5344.05hypothetical protein PHMEG_00032823 [Phytophthora ... [more]
gi|1173954176|gb|OQS01660.1|1.255e-5140.16Der1-like family [Achlya hypogyna][more]
gi|953487467|emb|CEG48295.1|5.543e-5143.31Predicted membrane protein [Plasmopara halstedii][more]
gi|813148998|ref|XP_012200146.1|1.562e-4937.55hypothetical protein SPRG_19921 [Saprolegnia paras... [more]
gi|669154690|ref|XP_008612907.1|1.817e-4937.85hypothetical protein SDRG_08788 [Saprolegnia dicli... [more]
gi|695373163|ref|XP_009514983.1|3.521e-4943.25hypothetical protein PHYSODRAFT_321455 [Phytophtho... [more]
gi|635370628|emb|CCI41219.1|5.980e-4940.73unnamed protein product [Albugo candida][more]
gi|325182042|emb|CCA16495.1|1.321e-4840.25Der1like family putative [Albugo laibachii Nc14][more]
gi|568016432|gb|ETL90609.1|1.430e-4842.23hypothetical protein L917_10745 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6982rna6982Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications