EWM23717.1, cds6956 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23717.1 vs. NCBI_GenBank
Match: gi|585104875|gb|EWM23717.1| (hypothetical protein Naga_101252g2, partial [Nannochloropsis gaditana]) HSP 1 Score: 763.066 bits (1969), Expect = 0.000e+0 Identity = 375/375 (100.00%), Postives = 375/375 (100.00%), Query Frame = 0
Query: 1 MTGLMAKPRSLFIAALFWLSCMVASFLVLGLLLEPCSAFQLPLFSRSQCGRTCRHNSRRNSVSNYGYIDKDAFLSLQQDIYDLKRPPSLLITVGPQCAGKTTLLKHLNESRPSFAPPLVDVAIDDQAGLYVPLPMPLFLEGGREGGREGGRKGSLDKLIKGRTLSSRCDDSATVESRLVLGYLHGMWEIENVEQALRALTSSSSSSSSSSSSSSSSSSSCPSEEDEWITLLLHALAKARATIATTTKVDTVATWSPPAASHYQLFLPDLLPQAIRRSYQRLTRSLCGPGPVAWGNTNSKARDFKEAILLAGKAGRRVLFIRWGKELGKEVGKEELVLRNVWRAYREGKYVPVRTIFCGLGKDQGTSERAGGRAGG 375
MTGLMAKPRSLFIAALFWLSCMVASFLVLGLLLEPCSAFQLPLFSRSQCGRTCRHNSRRNSVSNYGYIDKDAFLSLQQDIYDLKRPPSLLITVGPQCAGKTTLLKHLNESRPSFAPPLVDVAIDDQAGLYVPLPMPLFLEGGREGGREGGRKGSLDKLIKGRTLSSRCDDSATVESRLVLGYLHGMWEIENVEQALRALTSSSSSSSSSSSSSSSSSSSCPSEEDEWITLLLHALAKARATIATTTKVDTVATWSPPAASHYQLFLPDLLPQAIRRSYQRLTRSLCGPGPVAWGNTNSKARDFKEAILLAGKAGRRVLFIRWGKELGKEVGKEELVLRNVWRAYREGKYVPVRTIFCGLGKDQGTSERAGGRAGG
Sbjct: 1 MTGLMAKPRSLFIAALFWLSCMVASFLVLGLLLEPCSAFQLPLFSRSQCGRTCRHNSRRNSVSNYGYIDKDAFLSLQQDIYDLKRPPSLLITVGPQCAGKTTLLKHLNESRPSFAPPLVDVAIDDQAGLYVPLPMPLFLEGGREGGREGGRKGSLDKLIKGRTLSSRCDDSATVESRLVLGYLHGMWEIENVEQALRALTSSSSSSSSSSSSSSSSSSSCPSEEDEWITLLLHALAKARATIATTTKVDTVATWSPPAASHYQLFLPDLLPQAIRRSYQRLTRSLCGPGPVAWGNTNSKARDFKEAILLAGKAGRRVLFIRWGKELGKEVGKEELVLRNVWRAYREGKYVPVRTIFCGLGKDQGTSERAGGRAGG 375
BLAST of EWM23717.1 vs. NCBI_GenBank
Match: gi|299469633|emb|CBN76487.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 94.7449 bits (234), Expect = 1.296e-17 Identity = 90/288 (31.25%), Postives = 127/288 (44.10%), Query Frame = 0
Query: 87 PSLLITVGPQCAGKTTLLKHLNESRPSFAPPLVDVAIDDQAGLYVPLPMPLFLEGGREGGREGGRKGSLDKLIKGRTLSSRCDDSATVESRLVLGYLHGMWEIENVEQALRALTSSSSSSSSSSSSSSSSSSSCPSEEDEWITLLLHALAKARATIATTTKVDTVATWSPPAASHYQLFL-PDLLPQAIRRSYQRLTRSLCGP-GPVAWGNTNSKARDFKEAILLAGKAGRRVLFIRWGKELGKEVGKEELVLRNVWRAYREGKYVPVRTIFCGLGK-DQGTSERAGG 371
P+LL+T+GPQCAGKT+LL+ A+ ++ +Y +P L L G G E D L+ R LS R D VE+RLV L G E L +S ++ I L A+ A ++ ++ T +F+ +L P AI S +RL + G VAWGNTN++ARD++ A+ A + GR V F+RWG EL + EEL RNV R G+YV I L + D+ + AGG
Sbjct: 14 PALLVTIGPQCAGKTSLLR----------------ALAAKSEVYHKIPTALLLGGCARGSPE-------DLLLAQRPLSDRLGDPGCVETRLVTFRLEGHISAEEFAGRLGECRGQASPAA--------------------IAALCRAVESA---VSDNVRISTPTV---------DVFVRENLFPDAISSSQERLAAAATDEDGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHEL-PFLSLEELSRRNVCRFAYTGRYVETAAIENALARVDKLYASTAGG 245
BLAST of EWM23717.1 vs. NCBI_GenBank
Match: gi|224006203|ref|XP_002292062.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972581|gb|EED90913.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 77.411 bits (189), Expect = 6.820e-12 Identity = 89/349 (25.50%), Postives = 144/349 (41.26%), Query Frame = 0
Query: 82 DLKR-----PPS------LLITVGPQCAGKTTLLK-------HLNESRPSFAPPLVDVAIDDQAGLYVPLPMPLFLEGGREGGREGGRKGSLDKLIKGRTLSSRCDDSATVESRLVLGYLHGMWEIENVEQALRALTSSSSSSSSSSSSSSSSSSSCPSEEDEWITLLLHALAKARATIATTTKVDTVATWSPPAASHYQLFLP---DLL---------PQAIRRSY-------------QRLTRSLC-------GPGPVAWGNTNSKARDFKEAILLAGKAGRRVLFIRWG------------------KELGKEVGKEE-----------LVLRNVWRAYREGKYVP 351
DLKR PPS + ITVGPQC GKTT+LK H NE + +D+ IDDQ +Y P+P+ LFL + ++ + ++ I G+++ R D + E +LV+ L G + + L ++ + S+ + + L+ A+ + I T K +T AA+ +L LP DL P + R+ QRL +S+ P+AWGNTN++ R+F A+ A +GR V FI +G + ++ G+ + L++RN+ R G+Y+P
Sbjct: 85 DLKRYRCSTPPSTQSKGPIYITVGPQCCGKTTILKRLFGTVFHNNEEEGGASTGGLDITIDDQELVYFPVPIQLFLP---DAALPSEQRSTSNQSILGKSVRDRVVDPSNNELKLVIQRLAGKLTAGDFIERL---------NNPQKNGQQQQSAPLQKNQKAVVADLVSAVEEV-IKINTDPKGETTENSMFFAAT--KLTLPKQIDLFVVESIFRPRPLELMRNTKNNTPSSSALDEAQRLIKSISTDSSVHDSAAPLAWGNTNTRPREFLSAMEAATLSGRPVEFIVFGGLDACVTICKHIMSGTETRTTSQDDGESDLLCLPKLSRRVLLMRNIQRFVNTGRYIP 418 The following BLAST results are available for this feature:
BLAST of EWM23717.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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