EWM23717.1, cds6956 (CDS) Nannochloropsis gaditana

Overview
NameEWM23717.1
Unique Namecds6956
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:139498..140623 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23717.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101252g2.9004.mrna
GbkeyCDS
End range.
End range140623
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:139498..140623 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Homology
BLAST of EWM23717.1 vs. NCBI_GenBank
Match: gi|585104875|gb|EWM23717.1| (hypothetical protein Naga_101252g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 763.066 bits (1969), Expect = 0.000e+0
Identity = 375/375 (100.00%), Postives = 375/375 (100.00%), Query Frame = 0
Query:    1 MTGLMAKPRSLFIAALFWLSCMVASFLVLGLLLEPCSAFQLPLFSRSQCGRTCRHNSRRNSVSNYGYIDKDAFLSLQQDIYDLKRPPSLLITVGPQCAGKTTLLKHLNESRPSFAPPLVDVAIDDQAGLYVPLPMPLFLEGGREGGREGGRKGSLDKLIKGRTLSSRCDDSATVESRLVLGYLHGMWEIENVEQALRALTSSSSSSSSSSSSSSSSSSSCPSEEDEWITLLLHALAKARATIATTTKVDTVATWSPPAASHYQLFLPDLLPQAIRRSYQRLTRSLCGPGPVAWGNTNSKARDFKEAILLAGKAGRRVLFIRWGKELGKEVGKEELVLRNVWRAYREGKYVPVRTIFCGLGKDQGTSERAGGRAGG 375
            MTGLMAKPRSLFIAALFWLSCMVASFLVLGLLLEPCSAFQLPLFSRSQCGRTCRHNSRRNSVSNYGYIDKDAFLSLQQDIYDLKRPPSLLITVGPQCAGKTTLLKHLNESRPSFAPPLVDVAIDDQAGLYVPLPMPLFLEGGREGGREGGRKGSLDKLIKGRTLSSRCDDSATVESRLVLGYLHGMWEIENVEQALRALTSSSSSSSSSSSSSSSSSSSCPSEEDEWITLLLHALAKARATIATTTKVDTVATWSPPAASHYQLFLPDLLPQAIRRSYQRLTRSLCGPGPVAWGNTNSKARDFKEAILLAGKAGRRVLFIRWGKELGKEVGKEELVLRNVWRAYREGKYVPVRTIFCGLGKDQGTSERAGGRAGG
Sbjct:    1 MTGLMAKPRSLFIAALFWLSCMVASFLVLGLLLEPCSAFQLPLFSRSQCGRTCRHNSRRNSVSNYGYIDKDAFLSLQQDIYDLKRPPSLLITVGPQCAGKTTLLKHLNESRPSFAPPLVDVAIDDQAGLYVPLPMPLFLEGGREGGREGGRKGSLDKLIKGRTLSSRCDDSATVESRLVLGYLHGMWEIENVEQALRALTSSSSSSSSSSSSSSSSSSSCPSEEDEWITLLLHALAKARATIATTTKVDTVATWSPPAASHYQLFLPDLLPQAIRRSYQRLTRSLCGPGPVAWGNTNSKARDFKEAILLAGKAGRRVLFIRWGKELGKEVGKEELVLRNVWRAYREGKYVPVRTIFCGLGKDQGTSERAGGRAGG 375          
BLAST of EWM23717.1 vs. NCBI_GenBank
Match: gi|299469633|emb|CBN76487.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 94.7449 bits (234), Expect = 1.296e-17
Identity = 90/288 (31.25%), Postives = 127/288 (44.10%), Query Frame = 0
Query:   87 PSLLITVGPQCAGKTTLLKHLNESRPSFAPPLVDVAIDDQAGLYVPLPMPLFLEGGREGGREGGRKGSLDKLIKGRTLSSRCDDSATVESRLVLGYLHGMWEIENVEQALRALTSSSSSSSSSSSSSSSSSSSCPSEEDEWITLLLHALAKARATIATTTKVDTVATWSPPAASHYQLFL-PDLLPQAIRRSYQRLTRSLCGP-GPVAWGNTNSKARDFKEAILLAGKAGRRVLFIRWGKELGKEVGKEELVLRNVWRAYREGKYVPVRTIFCGLGK-DQGTSERAGG 371
            P+LL+T+GPQCAGKT+LL+                A+  ++ +Y  +P  L L G   G  E       D L+  R LS R  D   VE+RLV   L G    E     L      +S ++                    I  L  A+  A   ++   ++ T             +F+  +L P AI  S +RL  +     G VAWGNTN++ARD++ A+  A + GR V F+RWG EL   +  EEL  RNV R    G+YV    I   L + D+  +  AGG
Sbjct:   14 PALLVTIGPQCAGKTSLLR----------------ALAAKSEVYHKIPTALLLGGCARGSPE-------DLLLAQRPLSDRLGDPGCVETRLVTFRLEGHISAEEFAGRLGECRGQASPAA--------------------IAALCRAVESA---VSDNVRISTPTV---------DVFVRENLFPDAISSSQERLAAAATDEDGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHEL-PFLSLEELSRRNVCRFAYTGRYVETAAIENALARVDKLYASTAGG 245          
BLAST of EWM23717.1 vs. NCBI_GenBank
Match: gi|224006203|ref|XP_002292062.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972581|gb|EED90913.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 77.411 bits (189), Expect = 6.820e-12
Identity = 89/349 (25.50%), Postives = 144/349 (41.26%), Query Frame = 0
Query:   82 DLKR-----PPS------LLITVGPQCAGKTTLLK-------HLNESRPSFAPPLVDVAIDDQAGLYVPLPMPLFLEGGREGGREGGRKGSLDKLIKGRTLSSRCDDSATVESRLVLGYLHGMWEIENVEQALRALTSSSSSSSSSSSSSSSSSSSCPSEEDEWITLLLHALAKARATIATTTKVDTVATWSPPAASHYQLFLP---DLL---------PQAIRRSY-------------QRLTRSLC-------GPGPVAWGNTNSKARDFKEAILLAGKAGRRVLFIRWG------------------KELGKEVGKEE-----------LVLRNVWRAYREGKYVP 351
            DLKR     PPS      + ITVGPQC GKTT+LK       H NE     +   +D+ IDDQ  +Y P+P+ LFL    +      ++ + ++ I G+++  R  D +  E +LV+  L G     +  + L         ++   +     S+     +   +  L+ A+ +    I T  K +T       AA+  +L LP   DL          P  + R+              QRL +S+           P+AWGNTN++ R+F  A+  A  +GR V FI +G                  +   ++ G+ +           L++RN+ R    G+Y+P
Sbjct:   85 DLKRYRCSTPPSTQSKGPIYITVGPQCCGKTTILKRLFGTVFHNNEEEGGASTGGLDITIDDQELVYFPVPIQLFLP---DAALPSEQRSTSNQSILGKSVRDRVVDPSNNELKLVIQRLAGKLTAGDFIERL---------NNPQKNGQQQQSAPLQKNQKAVVADLVSAVEEV-IKINTDPKGETTENSMFFAAT--KLTLPKQIDLFVVESIFRPRPLELMRNTKNNTPSSSALDEAQRLIKSISTDSSVHDSAAPLAWGNTNTRPREFLSAMEAATLSGRPVEFIVFGGLDACVTICKHIMSGTETRTTSQDDGESDLLCLPKLSRRVLLMRNIQRFVNTGRYIP 418          
The following BLAST results are available for this feature:
BLAST of EWM23717.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585104875|gb|EWM23717.1|0.000e+0100.00hypothetical protein Naga_101252g2, partial [Nanno... [more]
gi|299469633|emb|CBN76487.1|1.296e-1731.25conserved unknown protein [Ectocarpus siliculosus][more]
gi|224006203|ref|XP_002292062.1|6.820e-1225.50predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6972rna6972Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications