EWM23724.1, cds6950 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM23724.1
Unique Name	cds6950
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002470.1:128483..128552 -
Alignment location	CM002470.1:127900..128387 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM23724.1
Product	Transcription elognation factor Eaf
Orig transcript id	gnl\|cribi\|Naga_100923g2.9452.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:128483..128552 -
CM002470.1	supercontig	CM002470.1:127900..128387 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **INTERPRO**
Term	Definition
IPR019194	Tscrpt_elong_fac_Eaf_N

Homology

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BLAST of EWM23724.1 vs. NCBI_GenBank
Match: gi|585104885|gb|EWM23724.1| (Transcription elognation factor Eaf [Nannochloropsis gaditana])

HSP 1 Score: 375.941 bits (964), Expect = 6.231e-132
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0

Query:    1 MPSNGTSPWPAGGEVPVNLNLDQGKECLLLQYRFKPGTVDYDVGATYDIEPSGRVTVHHALKAGAQTGPGRHHEDKKEEGRATLSFHGHRQPIHTQGREFVLIYEPETAKFEMRRLDALVPDVRDERAQGGAEGGSAGRMEDGKKLGPASWPPSGAKDEEEMEGGKERGGGNGGRIDGARGSAEA 185
            MPSNGTSPWPAGGEVPVNLNLDQGKECLLLQYRFKPGTVDYDVGATYDIEPSGRVTVHHALKAGAQTGPGRHHEDKKEEGRATLSFHGHRQPIHTQGREFVLIYEPETAKFEMRRLDALVPDVRDERAQGGAEGGSAGRMEDGKKLGPASWPPSGAKDEEEMEGGKERGGGNGGRIDGARGSAEA
Sbjct:    1 MPSNGTSPWPAGGEVPVNLNLDQGKECLLLQYRFKPGTVDYDVGATYDIEPSGRVTVHHALKAGAQTGPGRHHEDKKEEGRATLSFHGHRQPIHTQGREFVLIYEPETAKFEMRRLDALVPDVRDERAQGGAEGGSAGRMEDGKKLGPASWPPSGAKDEEEMEGGKERGGGNGGRIDGARGSAEA 185

The following BLAST results are available for this feature:

BLAST of EWM23724.1 vs. NCBI_GenBank

BLAST of EWM23724.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585104885\|gb\|EWM23724.1\|	6.231e-132	100.00	Transcription elognation factor Eaf [Nannochlorops...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna6966	rna6966	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications