EWM23759.1, cds6914 (CDS) Nannochloropsis gaditana

Overview
NameEWM23759.1
Unique Namecds6914
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:44149..44188 +
Alignment locationCM002470.1:44452..44519 +
Alignment locationCM002470.1:44870..44962 +
Alignment locationCM002470.1:45164..45299 +
Alignment locationCM002470.1:45557..45816 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23759.1
Productatp-binding cassette sub-family d member 3
Orig transcript idgnl|cribi|Naga_101730g1.1312.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:44149..44188 +
CM002470.1supercontigCM002470.1:44452..44519 +
CM002470.1supercontigCM002470.1:44870..44962 +
CM002470.1supercontigCM002470.1:45164..45299 +
CM002470.1supercontigCM002470.1:45557..45816 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0055085transmembrane transport
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0005515protein binding
GO:0000166nucleotide binding
GO:0042626ATPase activity, coupled to transmembrane movement of substances
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005777peroxisome
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR011527ABC1_TM_dom
Homology
BLAST of EWM23759.1 vs. NCBI_GenBank
Match: gi|585104965|gb|EWM23759.1| (atp-binding cassette sub-family d member 3 [Nannochloropsis gaditana])

HSP 1 Score: 400.208 bits (1027), Expect = 4.395e-141
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0
Query:    1 MTVDVDKFSLCITELASNLLKPTLDILLYATKLQTSVGPLIPLAMASYLFSSGTALTRLRRPAAEYTAAIQRREGDYRFVTNRMVAHAEEIAFYDGVGREKNYLQRIFGSLLGTIRRGSRFRHAMDILDSVMAKYIATALGWMLLNRAAQVPPASSLPPSLPPSLLPSFPSILSPCLLLAGVLRADCRDHLDVDRSRL 198
            MTVDVDKFSLCITELASNLLKPTLDILLYATKLQTSVGPLIPLAMASYLFSSGTALTRLRRPAAEYTAAIQRREGDYRFVTNRMVAHAEEIAFYDGVGREKNYLQRIFGSLLGTIRRGSRFRHAMDILDSVMAKYIATALGWMLLNRAAQVPPASSLPPSLPPSLLPSFPSILSPCLLLAGVLRADCRDHLDVDRSRL
Sbjct:    1 MTVDVDKFSLCITELASNLLKPTLDILLYATKLQTSVGPLIPLAMASYLFSSGTALTRLRRPAAEYTAAIQRREGDYRFVTNRMVAHAEEIAFYDGVGREKNYLQRIFGSLLGTIRRGSRFRHAMDILDSVMAKYIATALGWMLLNRAAQVPPASSLPPSLPPSLLPSFPSILSPCLLLAGVLRADCRDHLDVDRSRL 198          
BLAST of EWM23759.1 vs. NCBI_GenBank
Match: gi|1173960541|gb|OQS06657.1| (ATP-binding Cassette (ABC) Superfamily [Thraustotheca clavata])

HSP 1 Score: 147.902 bits (372), Expect = 1.390e-37
Identity = 69/147 (46.94%), Postives = 100/147 (68.03%), Query Frame = 0
Query:    1 MTVDVDKFSLCITELASNLLKPTLDILLYATKLQTSVGPLIPLAMASYLFSSGTALTRLRRPAAEYTAAIQRREGDYRFVTNRMVAHAEEIAFYDGVGREKNYLQRIFGSLLGTIRRGSRFRHAMDILDSVMAKYIATALGWMLLNR 147
            +TVDV++F+  + +L SN+ KP LDI +YA KL  ++G   P  M SYL  SG  LT LR+P   +T A QR EG+YR++  R++ H EEIAFY+G  RE + +Q  F SL+  IR+  +FR +M ++D+V+AKY AT LG+ L++R
Sbjct:  922 LTVDVERFATSVADLYSNITKPLLDIAIYAVKLTGTIGLAGPTTMLSYLIGSGMFLTWLRQPTGRFTIAEQRLEGNYRYINARLITHGEEIAFYNGNKREASIIQSSFDSLVKLIRQSQQFRFSMSVIDNVIAKYFATVLGFFLVSR 1068          
BLAST of EWM23759.1 vs. NCBI_GenBank
Match: gi|813172032|ref|XP_012204771.1| (hypothetical protein SPRG_10324 [Saprolegnia parasitica CBS 223.65] >gi|641530384|gb|KDO24509.1| hypothetical protein SPRG_10324 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 146.747 bits (369), Expect = 1.791e-37
Identity = 70/147 (47.62%), Postives = 101/147 (68.71%), Query Frame = 0
Query:    1 MTVDVDKFSLCITELASNLLKPTLDILLYATKLQTSVGPLIPLAMASYLFSSGTALTRLRRPAAEYTAAIQRREGDYRFVTNRMVAHAEEIAFYDGVGREKNYLQRIFGSLLGTIRRGSRFRHAMDILDSVMAKYIATALGWMLLNR 147
            +TVDV++F+  + +L SN+ KP LDI +YA KL  ++G   P+ M SYL  SG  LT LR+P   +T A QR EG YR++  R++ H EEIAFY+G  RE + LQ  F +L+  IR+  +FR +M ++DSV+AKY AT LG++L++R
Sbjct:  184 LTVDVERFATSVADLYSNVTKPILDIGIYAVKLTGTIGLAGPMTMLSYLVGSGMFLTWLRQPTGRFTIAEQRLEGAYRYINARLITHGEEIAFYNGNKREASILQASFDALVSLIRQSQQFRFSMSVIDSVIAKYFATVLGFVLVSR 330          
BLAST of EWM23759.1 vs. NCBI_GenBank
Match: gi|669154950|ref|XP_008613037.1| (ATP-binding cassette, subfamily D (ALD), member 3 [Saprolegnia diclina VS20] >gi|530735155|gb|EQC33397.1| ATP-binding cassette, subfamily D (ALD), member 3 [Saprolegnia diclina VS20])

HSP 1 Score: 146.747 bits (369), Expect = 1.791e-37
Identity = 70/147 (47.62%), Postives = 101/147 (68.71%), Query Frame = 0
Query:    1 MTVDVDKFSLCITELASNLLKPTLDILLYATKLQTSVGPLIPLAMASYLFSSGTALTRLRRPAAEYTAAIQRREGDYRFVTNRMVAHAEEIAFYDGVGREKNYLQRIFGSLLGTIRRGSRFRHAMDILDSVMAKYIATALGWMLLNR 147
            +TVDV++F+  + +L SN+ KP LDI +YA KL  ++G   P+ M SYL  SG  LT LR+P   +T A QR EG YR++  R++ H EEIAFY+G  RE + LQ  F +L+  IR+  +FR +M ++DSV+AKY AT LG++L++R
Sbjct:  184 LTVDVERFATSVADLYSNVTKPLLDIGIYAVKLTGTIGLAGPMTMLSYLVGSGMFLTWLRQPTGRFTIAEQRLEGAYRYINARLITHGEEIAFYNGNKREASILQSSFDALVSLIRQSQQFRFSMSVIDSVIAKYFATVLGFVLVSR 330          
BLAST of EWM23759.1 vs. NCBI_GenBank
Match: gi|1173931395|gb|OQR83825.1| (ATP-binding Cassette (ABC) Superfamily [Achlya hypogyna])

HSP 1 Score: 145.206 bits (365), Expect = 5.248e-37
Identity = 70/147 (47.62%), Postives = 100/147 (68.03%), Query Frame = 0
Query:    1 MTVDVDKFSLCITELASNLLKPTLDILLYATKLQTSVGPLIPLAMASYLFSSGTALTRLRRPAAEYTAAIQRREGDYRFVTNRMVAHAEEIAFYDGVGREKNYLQRIFGSLLGTIRRGSRFRHAMDILDSVMAKYIATALGWMLLNR 147
            +TVDV++F+  + +L SN+ KP LDI +YA KL  ++G   P  M SYL  SG  LT LR+P   +T A QR EG YR++  R++ H EEIAFY+G  RE + LQ  F SL+  IR+  +FR +M ++D+V+AKY AT LG++L++R
Sbjct:  184 LTVDVERFATSVADLYSNVTKPLLDIGIYAVKLTGTIGLAGPATMLSYLVGSGMFLTWLRQPTGRFTIAEQRLEGAYRYINARLITHGEEIAFYNGNKREASILQSSFDSLVSLIRQSQQFRFSMSVIDNVIAKYFATVLGFVLVSR 330          
BLAST of EWM23759.1 vs. NCBI_GenBank
Match: gi|298708548|emb|CBJ49181.1| (peroxisomal membrane protein 70 abcd3, putative [Ectocarpus siliculosus])

HSP 1 Score: 145.591 bits (366), Expect = 6.431e-37
Identity = 66/147 (44.90%), Postives = 101/147 (68.71%), Query Frame = 0
Query:    1 MTVDVDKFSLCITELASNLLKPTLDILLYATKLQTSVGPLIPLAMASYLFSSGTALTRLRRPAAEYTAAIQRREGDYRFVTNRMVAHAEEIAFYDGVGREKNYLQRIFGSLLGTIRRGSRFRHAMDILDSVMAKYIATALGWMLLNR 147
            +T DV++F+  + EL SN+ KP LD+L+Y  +L   V  + P  M +YL  SG AL+ LR+P A YTA + ++EG+YR+V +R++ +A+EIAFY G  +EK  L+ +F  L+   RR  RFRH++  LDSV+AKY A+ +GW +++R
Sbjct:   66 ITQDVERFAASMAELFSNITKPVLDMLIYVRRLSDKVDAVAPATMIAYLLLSGVALSALRKPTAMYTALVAQQEGEYRYVNSRLLTNAQEIAFYKGNTKEKQVLEGVFDKLVSVTRRSERFRHSLGALDSVVAKYFASLVGWTVVSR 212          
BLAST of EWM23759.1 vs. NCBI_GenBank
Match: gi|301091276|ref|XP_002895826.1| (ATP-binding Cassette (ABC) Superfamily [Phytophthora infestans T30-4] >gi|262096576|gb|EEY54628.1| ATP-binding Cassette (ABC) Superfamily [Phytophthora infestans T30-4])

HSP 1 Score: 143.665 bits (361), Expect = 2.440e-36
Identity = 66/147 (44.90%), Postives = 105/147 (71.43%), Query Frame = 0
Query:    1 MTVDVDKFSLCITELASNLLKPTLDILLYATKLQTSVGPLIPLAMASYLFSSGTALTRLRRPAAEYTAAIQRREGDYRFVTNRMVAHAEEIAFYDGVGREKNYLQRIFGSLLGTIRRGSRFRHAMDILDSVMAKYIATALGWMLLNR 147
            +TVDV++FS  + +L SN+ KP LDI +YA KL +S+G   P+ M SYL +SG  LT LR+P + +T A Q+ EG++RF+ +R++ H+EEIAFY+G  REK  L + F  L+  +R   +FR +M ++D+++AKY+AT +G+ +L++
Sbjct:  187 LTVDVERFSNSVADLYSNMSKPVLDIAIYAVKLSSSIGVEGPVIMLSYLVASGFFLTWLRQPTSRFTIAEQQMEGNFRFMNSRLITHSEEIAFYNGNVREKRILDQSFTRLIDLVRSSQQFRFSMSVIDNIVAKYLATVVGYAVLSK 333          
BLAST of EWM23759.1 vs. NCBI_GenBank
Match: gi|675162225|ref|XP_008889997.1| (hypothetical protein PPTG_00365 [Phytophthora parasitica INRA-310] >gi|566034308|gb|ETI57219.1| hypothetical protein F443_00446 [Phytophthora parasitica P1569] >gi|567971984|gb|ETK96979.1| hypothetical protein L915_00413 [Phytophthora parasitica] >gi|568000305|gb|ETL50326.1| hypothetical protein L916_00416 [Phytophthora parasitica] >gi|568029460|gb|ETM03386.1| hypothetical protein L917_00388 [Phytophthora parasitica] >gi|568060102|gb|ETM56645.1| hypothetical protein L914_00416 [Phytophthora parasitica] >gi|568109255|gb|ETN23862.1| hypothetical protein PPTG_00365 [Phytophthora parasitica INRA-310] >gi|570338014|gb|ETO85962.1| hypothetical protein F444_00443 [Phytophthora parasitica P1976] >gi|570934206|gb|ETO99462.1| hypothetical protein F441_23126 [Phytophthora parasitica CJ01A1] >gi|570962011|gb|ETP26990.1| hypothetical protein F441_00443 [Phytophthora parasitica CJ01A1] >gi|570998824|gb|ETP54954.1| hypothetical protein F442_00438 [Phytophthora parasitica P10297] >gi|970650585|gb|KUF89586.1| hypothetical protein AM588_10002340 [Phytophthora nicotianae] >gi|970652946|gb|KUF91512.1| ATP-binding Cassette (ABC) Superfamily [Phytophthora nicotianae])

HSP 1 Score: 143.28 bits (360), Expect = 2.711e-36
Identity = 66/147 (44.90%), Postives = 105/147 (71.43%), Query Frame = 0
Query:    1 MTVDVDKFSLCITELASNLLKPTLDILLYATKLQTSVGPLIPLAMASYLFSSGTALTRLRRPAAEYTAAIQRREGDYRFVTNRMVAHAEEIAFYDGVGREKNYLQRIFGSLLGTIRRGSRFRHAMDILDSVMAKYIATALGWMLLNR 147
            +TVDV++FS  + +L SN+ KP LDI +YA KL +S+G   P+ M SYL +SG  LT LR+P + +T A Q+ EG++RF+ +R++ H+EEIAFY+G  REK  L + F  L+  +R   +FR +M ++D+++AKY+AT +G+ +L++
Sbjct:  187 LTVDVERFSNSVADLYSNMSKPLLDIAIYAVKLSSSIGVEGPVIMLSYLVASGFFLTWLRQPTSRFTIAEQQMEGNFRFMNSRLITHSEEIAFYNGNVREKRILDQSFSRLIDLVRSSQQFRFSMSVIDNIVAKYLATVVGYAVLSK 333          
BLAST of EWM23759.1 vs. NCBI_GenBank
Match: gi|966702803|gb|KTG35044.1| (hypothetical protein cypCar_00045206 [Cyprinus carpio])

HSP 1 Score: 141.354 bits (355), Expect = 2.964e-36
Identity = 69/147 (46.94%), Postives = 100/147 (68.03%), Query Frame = 0
Query:    1 MTVDVDKFSLCITELASNLLKPTLDILLYATKLQTSVGPLIPLAMASYLFSSGTALTRLRRPAAEYTAAIQRREGDYRFVTNRMVAHAEEIAFYDGVGREKNYLQRIFGSLLGTIRRGSRFRHAMDILDSVMAKYIATALGWMLLNR 147
            +T DV+KF   + +L SN+ KP LDIL+Y  KL T++G L P ++ SYL  SG  LTRLRRP  + T   QR EG YR+V +R++ ++EEIAFY+G  REK  +   F  L+  + R   FR +M +LDS++AKYIA A+G+++++R
Sbjct:   37 ITQDVEKFCDSVVDLYSNVSKPLLDILIYICKLNTAIGSLGPASLLSYLLFSGLLLTRLRRPIGKMTVTEQRYEGQYRYVNSRLITNSEEIAFYNGNRREKQTINGTFQKLVDHLSRFIHFRFSMGVLDSIIAKYIAMAVGYLVISR 183          
BLAST of EWM23759.1 vs. NCBI_GenBank
Match: gi|1176057190|ref|XP_020605103.1| (ATP-binding cassette sub-family D member 3-like [Orbicella faveolata])

HSP 1 Score: 139.043 bits (349), Expect = 3.507e-36
Identity = 67/147 (45.58%), Postives = 99/147 (67.35%), Query Frame = 0
Query:    1 MTVDVDKFSLCITELASNLLKPTLDILLYATKLQTSVGPLIPLAMASYLFSSGTALTRLRRPAAEYTAAIQRREGDYRFVTNRMVAHAEEIAFYDGVGREKNYLQRIFGSLLGTIRRGSRFRHAMDILDSVMAKYIATALGWMLLNR 147
            +T DVDKF   + EL SN+ KP LDI++Y  KL  ++G   P  M +YL  SG  LTRLRRP    TA  Q  EG++RFV +R++ ++EEIAFY G  REK  +++ F  L+  +R   +FR +M I+D+++AKY+AT +G+M+++R
Sbjct:  200 LTQDVDKFCNSLAELYSNISKPLLDIVIYVQKLTGAIGIQGPTIMLAYLAVSGLLLTRLRRPVGRMTAEEQHHEGEFRFVNSRLITNSEEIAFYQGGKREKFTIEKTFQRLVDHLRNFIQFRFSMGIIDNIIAKYVATVVGFMVVSR 346          
The following BLAST results are available for this feature:
BLAST of EWM23759.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104965|gb|EWM23759.1|4.395e-141100.00atp-binding cassette sub-family d member 3 [Nannoc... [more]
gi|1173960541|gb|OQS06657.1|1.390e-3746.94ATP-binding Cassette (ABC) Superfamily [Thraustoth... [more]
gi|813172032|ref|XP_012204771.1|1.791e-3747.62hypothetical protein SPRG_10324 [Saprolegnia paras... [more]
gi|669154950|ref|XP_008613037.1|1.791e-3747.62ATP-binding cassette, subfamily D (ALD), member 3 ... [more]
gi|1173931395|gb|OQR83825.1|5.248e-3747.62ATP-binding Cassette (ABC) Superfamily [Achlya hyp... [more]
gi|298708548|emb|CBJ49181.1|6.431e-3744.90peroxisomal membrane protein 70 abcd3, putative [E... [more]
gi|301091276|ref|XP_002895826.1|2.440e-3644.90ATP-binding Cassette (ABC) Superfamily [Phytophtho... [more]
gi|675162225|ref|XP_008889997.1|2.711e-3644.90hypothetical protein PPTG_00365 [Phytophthora para... [more]
gi|966702803|gb|KTG35044.1|2.964e-3646.94hypothetical protein cypCar_00045206 [Cyprinus car... [more]
gi|1176057190|ref|XP_020605103.1|3.507e-3645.58ATP-binding cassette sub-family D member 3-like [O... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6930rna6930Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications