EWM23760.1, cds6913 (CDS) Nannochloropsis gaditana

Overview
NameEWM23760.1
Unique Namecds6913
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:42382..42548 +
Alignment locationCM002470.1:42750..43128 +
Alignment locationCM002470.1:43272..43423 +
Alignment locationCM002470.1:43598..43694 +
Alignment locationCM002470.1:43908..43970 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23760.1
Productatp-binding cassette sub-family d member 3
Orig transcript idgnl|cribi|Naga_101131g2.3822.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:42382..42548 +
CM002470.1supercontigCM002470.1:42750..43128 +
CM002470.1supercontigCM002470.1:43272..43423 +
CM002470.1supercontigCM002470.1:43598..43694 +
CM002470.1supercontigCM002470.1:43908..43970 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0055085transmembrane transport
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0000166nucleotide binding
GO:0042626ATPase activity, coupled to transmembrane movement of substances
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR011527ABC1_TM_dom
Homology
BLAST of EWM23760.1 vs. NCBI_GenBank
Match: gi|585104967|gb|EWM23760.1| (atp-binding cassette sub-family d member 3 [Nannochloropsis gaditana])

HSP 1 Score: 577.4 bits (1487), Expect = 0.000e+0
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0
Query:    1 MAPSFSHRGQKRHDNVVSAFFNSFMSAGEQKFTVVSSFFSSGLFLVALALVKQLSSLQEQEEKVAASLERQDPSKEGGSLAAPLPRPDGRCQTPQPPPPSPPPSASPSSFSATSTARTRSPNADALTRSGRDAAGHGERGSGGMRRPGGPPRPQEGQRVALDDEFGRQLLSLLHKLIPSWKTREAACLGGMVFLLLARSACDLRMINLVVGAEKAIVLGNRPAFRISLARFLRFMVPVACVNALLKYTTRELSLGLRQRLTEHLQSKYMKGFTFYSMAVMEGHAR 285
            MAPSFSHRGQKRHDNVVSAFFNSFMSAGEQKFTVVSSFFSSGLFLVALALVKQLSSLQEQEEKVAASLERQDPSKEGGSLAAPLPRPDGRCQTPQPPPPSPPPSASPSSFSATSTARTRSPNADALTRSGRDAAGHGERGSGGMRRPGGPPRPQEGQRVALDDEFGRQLLSLLHKLIPSWKTREAACLGGMVFLLLARSACDLRMINLVVGAEKAIVLGNRPAFRISLARFLRFMVPVACVNALLKYTTRELSLGLRQRLTEHLQSKYMKGFTFYSMAVMEGHAR
Sbjct:    1 MAPSFSHRGQKRHDNVVSAFFNSFMSAGEQKFTVVSSFFSSGLFLVALALVKQLSSLQEQEEKVAASLERQDPSKEGGSLAAPLPRPDGRCQTPQPPPPSPPPSASPSSFSATSTARTRSPNADALTRSGRDAAGHGERGSGGMRRPGGPPRPQEGQRVALDDEFGRQLLSLLHKLIPSWKTREAACLGGMVFLLLARSACDLRMINLVVGAEKAIVLGNRPAFRISLARFLRFMVPVACVNALLKYTTRELSLGLRQRLTEHLQSKYMKGFTFYSMAVMEGHAR 285          
BLAST of EWM23760.1 vs. NCBI_GenBank
Match: gi|1008932189|gb|KYK55277.1| (hypothetical protein DCS_07240 [Drechmeria coniospora])

HSP 1 Score: 100.523 bits (249), Expect = 4.137e-20
Identity = 57/170 (33.53%), Postives = 87/170 (51.18%), Query Frame = 0
Query:  117 RTRSPNADALTRSGRDAAGH-GERGSGGMRRPGGPPRPQEGQRVALDDEFGRQLLSLLHKLIPSWKTREAACLGGMVFLLLARSACDLRMINLVVGAEKAIVLGNRPAFRISLARFLRFMVPVACVNALLKYTTRELSLGLRQRLTEHLQSKYMKGFTFYSMAVMEGHAR 285
            R R   ++    S RDAA     RG+        P  P+  ++VAL+ EF R LL LL  +IP W+T+E   L    F L+ R+   LR+  +     KA+V GN   F  ++  ++   +P  C N++L Y   ELSL  R RLT+H+  KY+   TFY ++ ++   +
Sbjct:   48 RVRHAISEQKAASIRDAAQRSARRGTVSTADDDDPAAPK--KKVALNREFFRSLLRLLKIVIPGWRTKETRLLISHSFFLVLRTLISLRVAEMDGAIVKALVKGNGKEFLTNIVWWMLIAIPATCTNSMLSYHQAELSLKYRSRLTQHIHDKYLSNLTFYGLSALDDRIK 215          
BLAST of EWM23760.1 vs. NCBI_GenBank
Match: gi|1057464441|gb|ODA82108.1| (hypothetical protein RJ55_00613 [Drechmeria coniospora])

HSP 1 Score: 100.523 bits (249), Expect = 4.383e-20
Identity = 57/170 (33.53%), Postives = 87/170 (51.18%), Query Frame = 0
Query:  117 RTRSPNADALTRSGRDAAGH-GERGSGGMRRPGGPPRPQEGQRVALDDEFGRQLLSLLHKLIPSWKTREAACLGGMVFLLLARSACDLRMINLVVGAEKAIVLGNRPAFRISLARFLRFMVPVACVNALLKYTTRELSLGLRQRLTEHLQSKYMKGFTFYSMAVMEGHAR 285
            R R   ++    S RDAA     RG+        P  P+  ++VAL+ EF R LL LL  +IP W+T+E   L    F L+ R+   LR+  +     KA+V GN   F  ++  ++   +P  C N++L Y   ELSL  R RLT+H+  KY+   TFY ++ ++   +
Sbjct:   48 RVRHAISEQKAASIRDAAQRSARRGTVSTADDDDPAAPK--KKVALNREFFRSLLRLLKIVIPGWRTKETRLLISHSFFLVLRTLISLRVAEMDGAIVKALVKGNGKEFLTNIVWWMLIAIPATCTNSMLSYHQAELSLKYRSRLTQHIHDKYLSNLTFYGLSALDDRIK 215          
BLAST of EWM23760.1 vs. NCBI_GenBank
Match: gi|675162225|ref|XP_008889997.1| (hypothetical protein PPTG_00365 [Phytophthora parasitica INRA-310] >gi|566034308|gb|ETI57219.1| hypothetical protein F443_00446 [Phytophthora parasitica P1569] >gi|567971984|gb|ETK96979.1| hypothetical protein L915_00413 [Phytophthora parasitica] >gi|568000305|gb|ETL50326.1| hypothetical protein L916_00416 [Phytophthora parasitica] >gi|568029460|gb|ETM03386.1| hypothetical protein L917_00388 [Phytophthora parasitica] >gi|568060102|gb|ETM56645.1| hypothetical protein L914_00416 [Phytophthora parasitica] >gi|568109255|gb|ETN23862.1| hypothetical protein PPTG_00365 [Phytophthora parasitica INRA-310] >gi|570338014|gb|ETO85962.1| hypothetical protein F444_00443 [Phytophthora parasitica P1976] >gi|570934206|gb|ETO99462.1| hypothetical protein F441_23126 [Phytophthora parasitica CJ01A1] >gi|570962011|gb|ETP26990.1| hypothetical protein F441_00443 [Phytophthora parasitica CJ01A1] >gi|570998824|gb|ETP54954.1| hypothetical protein F442_00438 [Phytophthora parasitica P10297] >gi|970650585|gb|KUF89586.1| hypothetical protein AM588_10002340 [Phytophthora nicotianae] >gi|970652946|gb|KUF91512.1| ATP-binding Cassette (ABC) Superfamily [Phytophthora nicotianae])

HSP 1 Score: 93.5893 bits (231), Expect = 7.574e-18
Identity = 46/126 (36.51%), Postives = 78/126 (61.90%), Query Frame = 0
Query:  157 QRVALDDEFGRQLLSLLHKLIPSWKTREAACLGGMVFLLLARSACDLRMINLVVGAEKAIVLGNRPAFRISLARFLRFMVPVACVNALLKYTTRELSLGLRQRLTEHLQSKYMKGFTFYSMAVMEG 282
            Q+VA++ EF R+ L L   ++P   T E      +  +L+AR++ D+ +++     E+AI+  ++  F   L RF+  M+P++CVN+LLKY   ELSL  R RLT+HL  +Y+KGF +Y ++ ++ 
Sbjct:   53 QKVAVNKEFYRRFLRLFKVIVPGPFTAEVGFAALVAVMLVARTSFDIVVLHTFTAIERAIISRSQTDFMRHLRRFVAIMLPMSCVNSLLKYGHTELSLRFRTRLTKHLYEQYVKGFVYYKVSNLDN 178          
BLAST of EWM23760.1 vs. NCBI_GenBank
Match: gi|780169442|ref|XP_011684247.1| (PREDICTED: ATP-binding cassette sub-family D member 3 isoform X3 [Strongylocentrotus purpuratus] >gi|780169447|ref|XP_011684248.1| PREDICTED: ATP-binding cassette sub-family D member 3 isoform X4 [Strongylocentrotus purpuratus])

HSP 1 Score: 93.5893 bits (231), Expect = 8.469e-18
Identity = 46/125 (36.80%), Postives = 73/125 (58.40%), Query Frame = 0
Query:  158 RVALDDEFGRQLLSLLHKLIPSWKTREAACLGGMVFLLLARSACDLRMINLVVGAEKAIVLGNRPAFRISLARFLRFMVPVACVNALLKYTTRELSLGLRQRLTEHLQSKYMKGFTFYSMAVMEG 282
            R A+D +F R+L  +L  ++P W ++EA  L  +   L+AR+ CD+ MI      E +I+  +   F+  L  F+  M  ++ VN +LKY   EL L  R +LT HL S+Y+KGFT+Y M+ ++ 
Sbjct:   60 RAAVDGQFFRRLFRILRIIVPGWFSKEAGYLALVALSLIARTYCDVWMIQNGTAIESSIIGRDVNLFKKHLFNFITAMPVISLVNNILKYGLNELKLRFRTQLTSHLYSRYLKGFTYYKMSNLDN 184          
BLAST of EWM23760.1 vs. NCBI_GenBank
Match: gi|1050831054|gb|OCW30779.1| (ATP-binding cassette protein [Diaporthe helianthi])

HSP 1 Score: 93.5893 bits (231), Expect = 1.003e-17
Identity = 55/173 (31.79%), Postives = 87/173 (50.29%), Query Frame = 0
Query:  117 RTRSPNADALTRSGRDAAGHGERGSGGMRRPGGPPRPQEGQR----VALDDEFGRQLLSLLHKLIPSWKTREAACLGGMVFLLLARSACDLRMINLVVGAEKAIVLGNRPAFRISLARFLRFMVPVACVNALLKYTTRELSLGLRQRLTEHLQSKYMKGFTFYSMAVMEGHAR 285
            R R+  A+  T S R+AA   ER SG   R         G++    V LD EF R LL L+  ++P W+++E   L    F L+ R+   L++  +     KA+V GN   F + +  ++   VP    N++L +   ELSL  R RLT+H+  KY+   TFY ++ ++   +
Sbjct:   55 RVRNAIAEQKTASAREAAKRAER-SGTTGRVDTAEEDDGGKKKRRKVELDREFFRSLLRLMRIVVPGWRSKETRLLISHSFFLVVRTLISLKVAAMDGAIVKALVKGNGKEFLMRIVWWMLIAVPATFTNSMLSWHQAELSLKYRTRLTQHIHDKYLSKLTFYGISALDDRIK 226          
BLAST of EWM23760.1 vs. NCBI_GenBank
Match: gi|390335880|ref|XP_788720.3| (PREDICTED: ATP-binding cassette sub-family D member 3 isoform X1 [Strongylocentrotus purpuratus] >gi|780169437|ref|XP_011684245.1| PREDICTED: ATP-binding cassette sub-family D member 3 isoform X2 [Strongylocentrotus purpuratus])

HSP 1 Score: 93.2041 bits (230), Expect = 1.003e-17
Identity = 46/125 (36.80%), Postives = 73/125 (58.40%), Query Frame = 0
Query:  158 RVALDDEFGRQLLSLLHKLIPSWKTREAACLGGMVFLLLARSACDLRMINLVVGAEKAIVLGNRPAFRISLARFLRFMVPVACVNALLKYTTRELSLGLRQRLTEHLQSKYMKGFTFYSMAVMEG 282
            R A+D +F R+L  +L  ++P W ++EA  L  +   L+AR+ CD+ MI      E +I+  +   F+  L  F+  M  ++ VN +LKY   EL L  R +LT HL S+Y+KGFT+Y M+ ++ 
Sbjct:   60 RAAVDGQFFRRLFRILRIIVPGWFSKEAGYLALVALSLIARTYCDVWMIQNGTAIESSIIGRDVNLFKKHLFNFITAMPVISLVNNILKYGLNELKLRFRTQLTSHLYSRYLKGFTYYKMSNLDN 184          
BLAST of EWM23760.1 vs. NCBI_GenBank
Match: gi|301091276|ref|XP_002895826.1| (ATP-binding Cassette (ABC) Superfamily [Phytophthora infestans T30-4] >gi|262096576|gb|EEY54628.1| ATP-binding Cassette (ABC) Superfamily [Phytophthora infestans T30-4])

HSP 1 Score: 92.8189 bits (229), Expect = 1.478e-17
Identity = 46/126 (36.51%), Postives = 77/126 (61.11%), Query Frame = 0
Query:  157 QRVALDDEFGRQLLSLLHKLIPSWKTREAACLGGMVFLLLARSACDLRMINLVVGAEKAIVLGNRPAFRISLARFLRFMVPVACVNALLKYTTRELSLGLRQRLTEHLQSKYMKGFTFYSMAVMEG 282
            Q+VA++ EF R+ L L   ++P   T E      +  +L+AR++ D+ +++     E+AI+  ++  F   L RF+  M+P++CVN+LLKY   ELSL  R RLT HL  +Y+KGF +Y ++ ++ 
Sbjct:   53 QKVAVNREFYRRFLRLFKVIVPGPFTAEVGFAALVAVMLVARTSFDIVVLHTFTAVERAIISRSQTDFMRHLRRFVAIMLPMSCVNSLLKYGHTELSLRFRTRLTRHLYEQYVKGFVYYKVSNLDN 178          
BLAST of EWM23760.1 vs. NCBI_GenBank
Match: gi|1173960541|gb|OQS06657.1| (ATP-binding Cassette (ABC) Superfamily [Thraustotheca clavata])

HSP 1 Score: 92.0485 bits (227), Expect = 3.111e-17
Identity = 48/134 (35.82%), Postives = 80/134 (59.70%), Query Frame = 0
Query:  151 PRPQEGQ--RVALDDEFGRQLLSLLHKLIPSWKTREAACLGGMVFLLLARSACDLRMINLVVGAEKAIVLGNRPAFRISLARFLRFMVPVACVNALLKYTTRELSLGLRQRLTEHLQSKYMKGFTFYSMAVMEG 282
            P+ Q+GQ  +VA++ EF  + + L   +IP   T E A   G+  LL  R++ D+ ++ ++   E+AI+  +   F + L+RF   M+PV+CVN LLKY   ELSL  R RL+  L +KY+  +T+Y ++ ++ 
Sbjct:  780 PQKQKGQEKKVAINKEFLDRFIRLFKIIIPGVWTPEVAYAIGVAALLAMRTSFDITILRIITSIERAIIGRSSKDFMLHLSRFFLIMLPVSCVNCLLKYGHTELSLRFRSRLSTFLYTKYLHEYTYYKVSNLDA 913          
BLAST of EWM23760.1 vs. NCBI_GenBank
Match: gi|1025683731|gb|OAA71029.1| (ABC transporter [Cordyceps confragosa RCEF 1005])

HSP 1 Score: 91.6633 bits (226), Expect = 3.692e-17
Identity = 54/168 (32.14%), Postives = 88/168 (52.38%), Query Frame = 0
Query:  117 RTRSPNADALTRSGRDAAGHGERGSGGMRRPG---GPPRPQEGQRVALDDEFGRQLLSLLHKLIPSWKTREAACLGGMVFLLLARSACDLRMINLVVGAEKAIVLGNRPAFRISLARFLRFMVPVACVNALLKYTTRELSLGLRQRLTEHLQSKYMKGFTFYSMAVME 281
            R  +  A+    S R+A     R    + +PG   GP  P+  ++VALD EF R L+ L+  ++P W+++EA  L    F L+ R+   L++  +     KA+V GN   F   +A ++   VP    N++L Y   ELSL  R RLT+++  KY+   TFY ++ ++
Sbjct:   48 RIHNAIAEQKAASAREATQRASR-RATVSQPGDASGPDAPR--KKVALDREFFRSLMRLIRIVVPGWRSKEARLLISHSFFLVLRTLISLKVAEMDGAIVKALVRGNGKEFLTRIAWWMIIAVPATFTNSMLSYHQAELSLNYRTRLTQYIHDKYLSNLTFYGISALD 212          
The following BLAST results are available for this feature:
BLAST of EWM23760.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104967|gb|EWM23760.1|0.000e+0100.00atp-binding cassette sub-family d member 3 [Nannoc... [more]
gi|1008932189|gb|KYK55277.1|4.137e-2033.53hypothetical protein DCS_07240 [Drechmeria coniosp... [more]
gi|1057464441|gb|ODA82108.1|4.383e-2033.53hypothetical protein RJ55_00613 [Drechmeria conios... [more]
gi|675162225|ref|XP_008889997.1|7.574e-1836.51hypothetical protein PPTG_00365 [Phytophthora para... [more]
gi|780169442|ref|XP_011684247.1|8.469e-1836.80PREDICTED: ATP-binding cassette sub-family D membe... [more]
gi|1050831054|gb|OCW30779.1|1.003e-1731.79ATP-binding cassette protein [Diaporthe helianthi][more]
gi|390335880|ref|XP_788720.3|1.003e-1736.80PREDICTED: ATP-binding cassette sub-family D membe... [more]
gi|301091276|ref|XP_002895826.1|1.478e-1736.51ATP-binding Cassette (ABC) Superfamily [Phytophtho... [more]
gi|1173960541|gb|OQS06657.1|3.111e-1735.82ATP-binding Cassette (ABC) Superfamily [Thraustoth... [more]
gi|1025683731|gb|OAA71029.1|3.692e-1732.14ABC transporter [Cordyceps confragosa RCEF 1005][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6929rna6929Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications