EWM23783.1, cds6888 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23783.1 vs. NCBI_GenBank
Match: gi|585105007|gb|EWM23783.1| (hypothetical protein Naga_100475g1 [Nannochloropsis gaditana]) HSP 1 Score: 295.434 bits (755), Expect = 3.223e-101 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
Query: 1 MDSGKTQDDFVRAISSPNESDPVEKEIAAIAKASSFLPERYFSFGLCKTMEALGVEVNWDSIKTWCEKLNMDESRTQLDWDLLERSMKKLGDLELLMKQVEIREKKRLAERLEEKAKKTAEMAAVSLAATSSTSTPVEGKEPAMAN 146
MDSGKTQDDFVRAISSPNESDPVEKEIAAIAKASSFLPERYFSFGLCKTMEALGVEVNWDSIKTWCEKLNMDESRTQLDWDLLERSMKKLGDLELLMKQVEIREKKRLAERLEEKAKKTAEMAAVSLAATSSTSTPVEGKEPAMAN
Sbjct: 1 MDSGKTQDDFVRAISSPNESDPVEKEIAAIAKASSFLPERYFSFGLCKTMEALGVEVNWDSIKTWCEKLNMDESRTQLDWDLLERSMKKLGDLELLMKQVEIREKKRLAERLEEKAKKTAEMAAVSLAATSSTSTPVEGKEPAMAN 146
BLAST of EWM23783.1 vs. NCBI_GenBank
Match: gi|219123541|ref|XP_002182081.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406682|gb|EEC46621.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 69.3218 bits (168), Expect = 2.986e-11 Identity = 46/118 (38.98%), Postives = 67/118 (56.78%), Query Frame = 0
Query: 4 GKTQDDFVRAISSPNESDPVEKEIAAIAKASSFLPERYFSFGLCKTMEALGVEVNWDSI----KTWC-EKLNMDESRTQLDWDLLERSMKKLGDLELLMKQVEIREKKRLAERLEEKA 116
GK++ D A++ +S PV +I ++ RYF GL K ME+ GVE++ D + ++W EKL D DL + KL +E +MK++EIREKKR+AERLE+KA
Sbjct: 165 GKSKADIETALTGEGDS-PVAAIANSIKPNDYWMYSRYFGIGLIKIMESTGVEMDKDEVYPVMESWMQEKLGRSSLTACADSDLYFKIKDKLDMMETMMKEIEIREKKRMAERLEDKA 281
BLAST of EWM23783.1 vs. NCBI_GenBank
Match: gi|1072224216|gb|OEU08968.1| (hypothetical protein FRACYDRAFT_271638 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 68.9366 bits (167), Expect = 5.689e-11 Identity = 46/120 (38.33%), Postives = 69/120 (57.50%), Query Frame = 0
Query: 3 SGKTQDDFVRAISSPNESDPVEKEIAAIAKASSFLPERYFSFGLCKTMEALGVEVNWDSIKTWCE-----KLNMDESRTQLDWDLLERSMKKLGDLELLMKQVEIREKKRLAERLEEKAK 117
+GK+++D A+ + ++S P+ K A+I K ++ RYF GL K ME GVE++ D + E +L D DL KL +E +MK++EIREKKR+AERLE+KA+
Sbjct: 176 AGKSKEDIEAALKNGDDS-PLGKVAASIKKEEFWMYSRYFGIGLVKIMELTGVEMDKDEVYPVMENWMGTQLGKGYITACSDSDLFFVVKDKLDMMETMMKEIEIREKKRMAERLEKKAE 294
BLAST of EWM23783.1 vs. NCBI_GenBank
Match: gi|545701037|ref|XP_005702855.1| (thylakoid protein [Galdieria sulphuraria] >gi|452819272|gb|EME26335.1| thylakoid protein [Galdieria sulphuraria]) HSP 1 Score: 68.5514 bits (166), Expect = 6.722e-11 Identity = 39/120 (32.50%), Postives = 67/120 (55.83%), Query Frame = 0
Query: 4 GKTQDDFVRAISSPNESDPVEKEIAAIAKASSFLPERYFSFGLCKTMEALGVEVNWDSIKTWCEKLNMDESRTQLDWDLLERSMKKLGDLELLMKQVEIREKKRLAERLEEKAKKTAEMA 123
+T+ + + AI + DP+ + +IA+ F+ R F GL + ME G E N + + W L++ + + D D ++S+++L E L ++E R+KK+LAE+L EKAK+ E A
Sbjct: 184 SRTEREILLAIEEGGD-DPLANLLHSIAQNDGFVYSRLFGLGLVRMMELCGEEANSERCQKWASALHISSLKLEQDLDTYQQSLERLKQAEQLFAELEARQKKKLAEKLAEKAKRAQEEA 302
BLAST of EWM23783.1 vs. NCBI_GenBank
Match: gi|223995057|ref|XP_002287212.1| (hypothetical protein THAPSDRAFT_261275, partial [Thalassiosira pseudonana CCMP1335] >gi|220976328|gb|EED94655.1| hypothetical protein THAPSDRAFT_261275, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 65.4698 bits (158), Expect = 2.807e-10 Identity = 44/118 (37.29%), Postives = 67/118 (56.78%), Query Frame = 0
Query: 4 GKTQDDFVRAISSPNESDPVEKEIAAIAKASS----FLPERYFSFGLCKTMEALGVE----VNWDSIKTWCEKLNMDESRTQL-DWDLLERSMKKLGDLELLMKQVEIREKKRLAERL 112
GKT++D A+ +S ++AAIAKA+ ++ R+F GL + ME +GVE V +D ++ W K T D DL ++ KL +E +MK++EIREKKR+A+RL
Sbjct: 100 GKTKEDIASALKGEGDS-----QLAAIAKAAKGDQWWMYSRFFGVGLVRIMEIVGVEMDMSVAYDVMENWMGKCMEKPYYTACSDSDLYFKTKGKLDMMETMMKEIEIREKKRMADRL 212
BLAST of EWM23783.1 vs. NCBI_GenBank
Match: gi|397644025|gb|EJK76212.1| (hypothetical protein THAOC_02035 [Thalassiosira oceanica]) HSP 1 Score: 66.2402 bits (160), Expect = 3.406e-10 Identity = 43/119 (36.13%), Postives = 64/119 (53.78%), Query Frame = 0
Query: 4 GKTQDDFVRAISSPNESDPVEKEIAAIAKASSF-LPERYFSFGLCKTMEALGVE----VNWDSIKTWCEK-LNMDESRTQLDWDLLERSMKKLGDLELLMKQVEIREKKRLAERLEEKA 116
GKT++D A+ E D ++A AK + + R+F GL K M+ +G+E V +D ++ W L D DL + KL +E +MK++EIREKKR+A+RLE KA
Sbjct: 149 GKTREDIASALR--GEGDSTLAQVANGAKGDEYWMYSRFFGIGLVKMMDIVGIEQDMSVAYDVMEDWVGTCLGKPHYTACADSDLYFKQKGKLDMMETMMKEIEIREKKRMADRLEAKA 265
BLAST of EWM23783.1 vs. NCBI_GenBank
Match: gi|544210314|ref|XP_005535558.1| (photosystem II biogenesis protein Psb29 [Cyanidioschyzon merolae strain 10D] >gi|449015870|dbj|BAM79272.1| photosystem II biogenesis protein Psb29 [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 65.855 bits (159), Expect = 5.966e-10 Identity = 40/124 (32.26%), Postives = 64/124 (51.61%), Query Frame = 0
Query: 4 GKTQDDFVRAISSPN-----ESDPVEKEIAAIAKASS-FLPERYFSFGLCKTMEALGVEVNWDSIKTWCEKLNMDESRTQLDWDLLERSMKKLGDLELLMKQVEIREKKRLAERLEEKAKKTAE 121
GKT+ + + I E+ PV + A +A + R F GL K M + GVE+N +S+K W L + +R D + SM+KL E++ K++E RE+ R+A+ L KA++ E
Sbjct: 186 GKTEAELIEEIERDTGEDSAEAQPVIAALRACRRADGEYYYTRLFGIGLMKIMSSCGVEINLESVKKWANMLKISYARLDQDIGTYQMSMEKLTQAEVMFKELEARERARIADELARKAQEAEE 309
BLAST of EWM23783.1 vs. NCBI_GenBank
Match: gi|551672467|ref|XP_005838990.1| (hypothetical protein GUITHDRAFT_150871, partial [Guillardia theta CCMP2712] >gi|428183151|gb|EKX52010.1| hypothetical protein GUITHDRAFT_150871, partial [Guillardia theta CCMP2712]) HSP 1 Score: 65.855 bits (159), Expect = 6.392e-10 Identity = 43/119 (36.13%), Postives = 62/119 (52.10%), Query Frame = 0
Query: 4 GKTQDDFVRAISSPNESDPVEKEIAAIAKASSFLPERYFSFGLCKTMEALGVEVNWDSIKTWCEKL----------NMDESRTQLDWDLLERSMKKLGDLELLMKQVEIREKKRLAERL 112
GKT+ D V AI +S PV + +A++ K FL R F GL K M+ +GVE N ++ K W E L + S+ + D L S+ K+ L +VE REKK++AE+L
Sbjct: 174 GKTEADVVSAIKG-EDSSPVGQVLASLGKNEDFLYTRNFGAGLIKIMQVVGVEPNAENAKRWAEVLGFTSNTSALSGLSASKFETDVGLFLSSVDKMQQAMQLFAEVEAREKKKIAEKL 291
BLAST of EWM23783.1 vs. NCBI_GenBank
Match: gi|1210523162|dbj|GAX18213.1| (hypothetical protein FisN_25Hh197 [Fistulifera solaris]) HSP 1 Score: 62.003 bits (149), Expect = 1.335e-8 Identity = 46/115 (40.00%), Postives = 62/115 (53.91%), Query Frame = 0
Query: 4 GKTQDDFVRAISSPNESDPVEKEIAAIAKASSF-LPERYFSFGLCKTMEALGVEVNWDSI----KTWC-EKLNMDESRTQLDWDLLERSMKKLGDLELLMKQVEIREKKRLAERL 112
GK++ D A++ E D IA KA F + RYF GL K ME +GVE++ D + + W +KL D DL R KL +E +MK++EIREKKR+AERL
Sbjct: 174 GKSRADIEAALTG--EGDSPLAAIARSVKADEFWMYSRYFGLGLLKIMEDVGVEMDKDEVYPVMEDWVGKKLGKSYITACADSDLFFRIKDKLDMMETMMKEIEIREKKRMAERL 286
BLAST of EWM23783.1 vs. NCBI_GenBank
Match: gi|1210512173|dbj|GAX28746.1| (hypothetical protein FisN_25Lh197 [Fistulifera solaris]) HSP 1 Score: 60.077 bits (144), Expect = 7.373e-8 Identity = 45/115 (39.13%), Postives = 62/115 (53.91%), Query Frame = 0
Query: 4 GKTQDDFVRAISSPNESDPVEKEIAAIAKASSF-LPERYFSFGLCKTMEALGVEVNWDSI----KTWC-EKLNMDESRTQLDWDLLERSMKKLGDLELLMKQVEIREKKRLAERL 112
GK++ + A++ E D IA KA F + RYF GL K ME +GVE++ D + + W +KL D DL R KL +E +MK++EIREKKR+AERL
Sbjct: 174 GKSRAEIEAALTG--EGDSPLAAIARSVKADEFWMYSRYFGLGLLKIMEDVGVEMDKDEVYPVMEDWVGKKLGKSYITACADSDLFFRIKDKLDMMETMMKEIEIREKKRMAERL 286 The following BLAST results are available for this feature:
BLAST of EWM23783.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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