EWM23783.1, cds6888 (CDS) Nannochloropsis gaditana

Overview
NameEWM23783.1
Unique Namecds6888
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:761894..761951 +
Alignment locationCM002469.1:762132..762241 +
Alignment locationCM002469.1:762421..762506 +
Alignment locationCM002469.1:762740..762839 +
Alignment locationCM002469.1:763075..763161 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23783.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100475g1.2339.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:761894..761951 +
CM002469.1supercontigCM002469.1:762132..762241 +
CM002469.1supercontigCM002469.1:762421..762506 +
CM002469.1supercontigCM002469.1:762740..762839 +
CM002469.1supercontigCM002469.1:763075..763161 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0006091generation of precursor metabolites and energy
GO:0010207photosystem II assembly
GO:0015979photosynthesis
Vocabulary: INTERPRO
TermDefinition
IPR017499Thf1
Homology
BLAST of EWM23783.1 vs. NCBI_GenBank
Match: gi|585105007|gb|EWM23783.1| (hypothetical protein Naga_100475g1 [Nannochloropsis gaditana])

HSP 1 Score: 295.434 bits (755), Expect = 3.223e-101
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
Query:    1 MDSGKTQDDFVRAISSPNESDPVEKEIAAIAKASSFLPERYFSFGLCKTMEALGVEVNWDSIKTWCEKLNMDESRTQLDWDLLERSMKKLGDLELLMKQVEIREKKRLAERLEEKAKKTAEMAAVSLAATSSTSTPVEGKEPAMAN 146
            MDSGKTQDDFVRAISSPNESDPVEKEIAAIAKASSFLPERYFSFGLCKTMEALGVEVNWDSIKTWCEKLNMDESRTQLDWDLLERSMKKLGDLELLMKQVEIREKKRLAERLEEKAKKTAEMAAVSLAATSSTSTPVEGKEPAMAN
Sbjct:    1 MDSGKTQDDFVRAISSPNESDPVEKEIAAIAKASSFLPERYFSFGLCKTMEALGVEVNWDSIKTWCEKLNMDESRTQLDWDLLERSMKKLGDLELLMKQVEIREKKRLAERLEEKAKKTAEMAAVSLAATSSTSTPVEGKEPAMAN 146          
BLAST of EWM23783.1 vs. NCBI_GenBank
Match: gi|219123541|ref|XP_002182081.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406682|gb|EEC46621.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 69.3218 bits (168), Expect = 2.986e-11
Identity = 46/118 (38.98%), Postives = 67/118 (56.78%), Query Frame = 0
Query:    4 GKTQDDFVRAISSPNESDPVEKEIAAIAKASSFLPERYFSFGLCKTMEALGVEVNWDSI----KTWC-EKLNMDESRTQLDWDLLERSMKKLGDLELLMKQVEIREKKRLAERLEEKA 116
            GK++ D   A++   +S PV     +I     ++  RYF  GL K ME+ GVE++ D +    ++W  EKL         D DL  +   KL  +E +MK++EIREKKR+AERLE+KA
Sbjct:  165 GKSKADIETALTGEGDS-PVAAIANSIKPNDYWMYSRYFGIGLIKIMESTGVEMDKDEVYPVMESWMQEKLGRSSLTACADSDLYFKIKDKLDMMETMMKEIEIREKKRMAERLEDKA 281          
BLAST of EWM23783.1 vs. NCBI_GenBank
Match: gi|1072224216|gb|OEU08968.1| (hypothetical protein FRACYDRAFT_271638 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 68.9366 bits (167), Expect = 5.689e-11
Identity = 46/120 (38.33%), Postives = 69/120 (57.50%), Query Frame = 0
Query:    3 SGKTQDDFVRAISSPNESDPVEKEIAAIAKASSFLPERYFSFGLCKTMEALGVEVNWDSIKTWCE-----KLNMDESRTQLDWDLLERSMKKLGDLELLMKQVEIREKKRLAERLEEKAK 117
            +GK+++D   A+ + ++S P+ K  A+I K   ++  RYF  GL K ME  GVE++ D +    E     +L         D DL      KL  +E +MK++EIREKKR+AERLE+KA+
Sbjct:  176 AGKSKEDIEAALKNGDDS-PLGKVAASIKKEEFWMYSRYFGIGLVKIMELTGVEMDKDEVYPVMENWMGTQLGKGYITACSDSDLFFVVKDKLDMMETMMKEIEIREKKRMAERLEKKAE 294          
BLAST of EWM23783.1 vs. NCBI_GenBank
Match: gi|545701037|ref|XP_005702855.1| (thylakoid protein [Galdieria sulphuraria] >gi|452819272|gb|EME26335.1| thylakoid protein [Galdieria sulphuraria])

HSP 1 Score: 68.5514 bits (166), Expect = 6.722e-11
Identity = 39/120 (32.50%), Postives = 67/120 (55.83%), Query Frame = 0
Query:    4 GKTQDDFVRAISSPNESDPVEKEIAAIAKASSFLPERYFSFGLCKTMEALGVEVNWDSIKTWCEKLNMDESRTQLDWDLLERSMKKLGDLELLMKQVEIREKKRLAERLEEKAKKTAEMA 123
             +T+ + + AI    + DP+   + +IA+   F+  R F  GL + ME  G E N +  + W   L++   + + D D  ++S+++L   E L  ++E R+KK+LAE+L EKAK+  E A
Sbjct:  184 SRTEREILLAIEEGGD-DPLANLLHSIAQNDGFVYSRLFGLGLVRMMELCGEEANSERCQKWASALHISSLKLEQDLDTYQQSLERLKQAEQLFAELEARQKKKLAEKLAEKAKRAQEEA 302          
BLAST of EWM23783.1 vs. NCBI_GenBank
Match: gi|223995057|ref|XP_002287212.1| (hypothetical protein THAPSDRAFT_261275, partial [Thalassiosira pseudonana CCMP1335] >gi|220976328|gb|EED94655.1| hypothetical protein THAPSDRAFT_261275, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 65.4698 bits (158), Expect = 2.807e-10
Identity = 44/118 (37.29%), Postives = 67/118 (56.78%), Query Frame = 0
Query:    4 GKTQDDFVRAISSPNESDPVEKEIAAIAKASS----FLPERYFSFGLCKTMEALGVE----VNWDSIKTWCEKLNMDESRTQL-DWDLLERSMKKLGDLELLMKQVEIREKKRLAERL 112
            GKT++D   A+    +S     ++AAIAKA+     ++  R+F  GL + ME +GVE    V +D ++ W  K       T   D DL  ++  KL  +E +MK++EIREKKR+A+RL
Sbjct:  100 GKTKEDIASALKGEGDS-----QLAAIAKAAKGDQWWMYSRFFGVGLVRIMEIVGVEMDMSVAYDVMENWMGKCMEKPYYTACSDSDLYFKTKGKLDMMETMMKEIEIREKKRMADRL 212          
BLAST of EWM23783.1 vs. NCBI_GenBank
Match: gi|397644025|gb|EJK76212.1| (hypothetical protein THAOC_02035 [Thalassiosira oceanica])

HSP 1 Score: 66.2402 bits (160), Expect = 3.406e-10
Identity = 43/119 (36.13%), Postives = 64/119 (53.78%), Query Frame = 0
Query:    4 GKTQDDFVRAISSPNESDPVEKEIAAIAKASSF-LPERYFSFGLCKTMEALGVE----VNWDSIKTWCEK-LNMDESRTQLDWDLLERSMKKLGDLELLMKQVEIREKKRLAERLEEKA 116
            GKT++D   A+    E D    ++A  AK   + +  R+F  GL K M+ +G+E    V +D ++ W    L         D DL  +   KL  +E +MK++EIREKKR+A+RLE KA
Sbjct:  149 GKTREDIASALR--GEGDSTLAQVANGAKGDEYWMYSRFFGIGLVKMMDIVGIEQDMSVAYDVMEDWVGTCLGKPHYTACADSDLYFKQKGKLDMMETMMKEIEIREKKRMADRLEAKA 265          
BLAST of EWM23783.1 vs. NCBI_GenBank
Match: gi|544210314|ref|XP_005535558.1| (photosystem II biogenesis protein Psb29 [Cyanidioschyzon merolae strain 10D] >gi|449015870|dbj|BAM79272.1| photosystem II biogenesis protein Psb29 [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 65.855 bits (159), Expect = 5.966e-10
Identity = 40/124 (32.26%), Postives = 64/124 (51.61%), Query Frame = 0
Query:    4 GKTQDDFVRAISSPN-----ESDPVEKEIAAIAKASS-FLPERYFSFGLCKTMEALGVEVNWDSIKTWCEKLNMDESRTQLDWDLLERSMKKLGDLELLMKQVEIREKKRLAERLEEKAKKTAE 121
            GKT+ + +  I         E+ PV   + A  +A   +   R F  GL K M + GVE+N +S+K W   L +  +R   D    + SM+KL   E++ K++E RE+ R+A+ L  KA++  E
Sbjct:  186 GKTEAELIEEIERDTGEDSAEAQPVIAALRACRRADGEYYYTRLFGIGLMKIMSSCGVEINLESVKKWANMLKISYARLDQDIGTYQMSMEKLTQAEVMFKELEARERARIADELARKAQEAEE 309          
BLAST of EWM23783.1 vs. NCBI_GenBank
Match: gi|551672467|ref|XP_005838990.1| (hypothetical protein GUITHDRAFT_150871, partial [Guillardia theta CCMP2712] >gi|428183151|gb|EKX52010.1| hypothetical protein GUITHDRAFT_150871, partial [Guillardia theta CCMP2712])

HSP 1 Score: 65.855 bits (159), Expect = 6.392e-10
Identity = 43/119 (36.13%), Postives = 62/119 (52.10%), Query Frame = 0
Query:    4 GKTQDDFVRAISSPNESDPVEKEIAAIAKASSFLPERYFSFGLCKTMEALGVEVNWDSIKTWCEKL----------NMDESRTQLDWDLLERSMKKLGDLELLMKQVEIREKKRLAERL 112
            GKT+ D V AI    +S PV + +A++ K   FL  R F  GL K M+ +GVE N ++ K W E L           +  S+ + D  L   S+ K+     L  +VE REKK++AE+L
Sbjct:  174 GKTEADVVSAIKG-EDSSPVGQVLASLGKNEDFLYTRNFGAGLIKIMQVVGVEPNAENAKRWAEVLGFTSNTSALSGLSASKFETDVGLFLSSVDKMQQAMQLFAEVEAREKKKIAEKL 291          
BLAST of EWM23783.1 vs. NCBI_GenBank
Match: gi|1210523162|dbj|GAX18213.1| (hypothetical protein FisN_25Hh197 [Fistulifera solaris])

HSP 1 Score: 62.003 bits (149), Expect = 1.335e-8
Identity = 46/115 (40.00%), Postives = 62/115 (53.91%), Query Frame = 0
Query:    4 GKTQDDFVRAISSPNESDPVEKEIAAIAKASSF-LPERYFSFGLCKTMEALGVEVNWDSI----KTWC-EKLNMDESRTQLDWDLLERSMKKLGDLELLMKQVEIREKKRLAERL 112
            GK++ D   A++   E D     IA   KA  F +  RYF  GL K ME +GVE++ D +    + W  +KL         D DL  R   KL  +E +MK++EIREKKR+AERL
Sbjct:  174 GKSRADIEAALTG--EGDSPLAAIARSVKADEFWMYSRYFGLGLLKIMEDVGVEMDKDEVYPVMEDWVGKKLGKSYITACADSDLFFRIKDKLDMMETMMKEIEIREKKRMAERL 286          
BLAST of EWM23783.1 vs. NCBI_GenBank
Match: gi|1210512173|dbj|GAX28746.1| (hypothetical protein FisN_25Lh197 [Fistulifera solaris])

HSP 1 Score: 60.077 bits (144), Expect = 7.373e-8
Identity = 45/115 (39.13%), Postives = 62/115 (53.91%), Query Frame = 0
Query:    4 GKTQDDFVRAISSPNESDPVEKEIAAIAKASSF-LPERYFSFGLCKTMEALGVEVNWDSI----KTWC-EKLNMDESRTQLDWDLLERSMKKLGDLELLMKQVEIREKKRLAERL 112
            GK++ +   A++   E D     IA   KA  F +  RYF  GL K ME +GVE++ D +    + W  +KL         D DL  R   KL  +E +MK++EIREKKR+AERL
Sbjct:  174 GKSRAEIEAALTG--EGDSPLAAIARSVKADEFWMYSRYFGLGLLKIMEDVGVEMDKDEVYPVMEDWVGKKLGKSYITACADSDLFFRIKDKLDMMETMMKEIEIREKKRMAERL 286          
The following BLAST results are available for this feature:
BLAST of EWM23783.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105007|gb|EWM23783.1|3.223e-101100.00hypothetical protein Naga_100475g1 [Nannochloropsi... [more]
gi|219123541|ref|XP_002182081.1|2.986e-1138.98predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072224216|gb|OEU08968.1|5.689e-1138.33hypothetical protein FRACYDRAFT_271638 [Fragilario... [more]
gi|545701037|ref|XP_005702855.1|6.722e-1132.50thylakoid protein [Galdieria sulphuraria] >gi|4528... [more]
gi|223995057|ref|XP_002287212.1|2.807e-1037.29hypothetical protein THAPSDRAFT_261275, partial [T... [more]
gi|397644025|gb|EJK76212.1|3.406e-1036.13hypothetical protein THAOC_02035 [Thalassiosira oc... [more]
gi|544210314|ref|XP_005535558.1|5.966e-1032.26photosystem II biogenesis protein Psb29 [Cyanidios... [more]
gi|551672467|ref|XP_005838990.1|6.392e-1036.13hypothetical protein GUITHDRAFT_150871, partial [G... [more]
gi|1210523162|dbj|GAX18213.1|1.335e-840.00hypothetical protein FisN_25Hh197 [Fistulifera sol... [more]
gi|1210512173|dbj|GAX28746.1|7.373e-839.13hypothetical protein FisN_25Lh197 [Fistulifera sol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6904rna6904Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications