EWM29987.1, cds688 (CDS) Nannochloropsis gaditana

Overview
NameEWM29987.1
Unique Namecds688
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:166946..167093 -
Alignment locationCM002456.1:166733..166855 -
Alignment locationCM002456.1:166516..166597 -
Alignment locationCM002456.1:166020..166132 -
Alignment locationCM002456.1:165616..165785 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29987.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100276g3.9388.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:166946..167093 -
CM002456.1supercontigCM002456.1:166733..166855 -
CM002456.1supercontigCM002456.1:166516..166597 -
CM002456.1supercontigCM002456.1:166020..166132 -
CM002456.1supercontigCM002456.1:165616..165785 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR029058AB_hydrolase
Homology
[Close]
BLAST of EWM29987.1 vs. NCBI_GenBank
Match: gi|585112595|gb|EWM29987.1| (hypothetical protein Naga_100276g3 [Nannochloropsis gaditana])

HSP 1 Score: 427.172 bits (1097), Expect = 2.846e-151
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0 
Query:    1 MHAQKSGKSGHLVSLMGIGRESLKRLVVLSYRKKENGNDDGEKPRKPQKGKSRKANKNSPRPPVFTARIAILGSPSEEWGQGVRERLISEGWMEERVQVLPIPSPQAYPEAKWMAYLREGLKLRNTTFVIAAPGPAVGQVLRFLEKHPLRGSILLGPEASSDTRSWDYKRLRQHCPFFGLIYAMEGEEEEYVGVGPGDREGARGRGRQGWL 211
            MHAQKSGKSGHLVSLMGIGRESLKRLVVLSYRKKENGNDDGEKPRKPQKGKSRKANKNSPRPPVFTARIAILGSPSEEWGQGVRERLISEGWMEERVQVLPIPSPQAYPEAKWMAYLREGLKLRNTTFVIAAPGPAVGQVLRFLEKHPLRGSILLGPEASSDTRSWDYKRLRQHCPFFGLIYAMEGEEEEYVGVGPGDREGARGRGRQGWL
Sbjct:    1 MHAQKSGKSGHLVSLMGIGRESLKRLVVLSYRKKENGNDDGEKPRKPQKGKSRKANKNSPRPPVFTARIAILGSPSEEWGQGVRERLISEGWMEERVQVLPIPSPQAYPEAKWMAYLREGLKLRNTTFVIAAPGPAVGQVLRFLEKHPLRGSILLGPEASSDTRSWDYKRLRQHCPFFGLIYAMEGEEEEYVGVGPGDREGARGRGRQGWL 211
[Close]
BLAST of EWM29987.1 vs. NCBI_GenBank
Match: gi|585112594|gb|EWM29986.1| (hypothetical protein Naga_100276g3 [Nannochloropsis gaditana])

HSP 1 Score: 348.206 bits (892), Expect = 1.701e-119
Identity = 184/192 (95.83%), Postives = 185/192 (96.35%), Query Frame = 0 
Query:   20 RESLKRLVVLSYRKKENGNDDGEKPRKPQKGKSRKANKNSPRPPVFTARIAILGSPSEEWGQGVRERLISEGWMEERVQVLPIPSPQAYPEAKWMAYLREGLKLRNTTFVIAAPGPAVGQVLRFLEKHPLRGSILLGPEASSDTRSWDYKRLRQHCPFFGLIYAMEGEEEEYVGVGPGDREGARGRGRQGWL 211
            +ES  R V    RKKENGNDDGEKPRKPQKGKSRKANKNSPRPPVFTARIAILGSPSEEWGQGVRERLISEGWMEERVQVLPIPSPQAYPEAKWMAYLREGLKLRNTTFVIAAPGPAVGQVLRFLEKHPLRGSILLGPEASSDTRSWDYKRLRQHCPFFGLIYAMEGEEEEYVGVGPGDREGARGRGRQGWL
Sbjct:   59 KESQSRAVAAWVRKKENGNDDGEKPRKPQKGKSRKANKNSPRPPVFTARIAILGSPSEEWGQGVRERLISEGWMEERVQVLPIPSPQAYPEAKWMAYLREGLKLRNTTFVIAAPGPAVGQVLRFLEKHPLRGSILLGPEASSDTRSWDYKRLRQHCPFFGLIYAMEGEEEEYVGVGPGDREGARGRGRQGWL 250
The following BLAST results are available for this feature:
BLAST of EWM29987.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585112595|gb|EWM29987.1|2.846e-151100.00hypothetical protein Naga_100276g3 [Nannochloropsi... [more]
gi|585112594|gb|EWM29986.1|1.701e-11995.83hypothetical protein Naga_100276g3 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna688rna688Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications