EWM23811.1, cds6862 (CDS) Nannochloropsis gaditana

Overview
NameEWM23811.1
Unique Namecds6862
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:704420..704560 -
Alignment locationCM002469.1:704152..704289 -
Alignment locationCM002469.1:703513..703977 -
Alignment locationCM002469.1:703276..703382 -
Alignment locationCM002469.1:702897..703071 -

Link to JBrowse

Properties
Property NameValue
Start range702897
Start range.
Protein idEWM23811.1
Productendocytosis signaling protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100886g1.9408.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:704420..704560 -
CM002469.1supercontigCM002469.1:704152..704289 -
CM002469.1supercontigCM002469.1:703513..703977 -
CM002469.1supercontigCM002469.1:703276..703382 -
CM002469.1supercontigCM002469.1:702897..703071 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Homology
BLAST of EWM23811.1 vs. NCBI_GenBank
Match: gi|585105058|gb|EWM23811.1| (endocytosis signaling protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 706.827 bits (1823), Expect = 0.000e+0
Identity = 342/342 (100.00%), Postives = 342/342 (100.00%), Query Frame = 0
Query:    1 MHVDRNYKTDFDLYYKMNGDRIKTNAGNSDWQKEQEEEVATAHTHPLEQMHTQDVEEIEEDDGFEDLGRRDDEVKRRGNSVDDENLKLAGLAGKEPRLRKSREGKPRGPPNRGAPSPLPSTSSSICANPPSKGATRTTTHAPLGTKDPLLHTLLDDPEASSSNPPQSRDDIADFHHASSHSSSTSFLKKRRKQFEIPPHQVPGQAYHATIQKLKALYRGKVLELEEKYLFHRFGFEELTQQQLEAKAQVLLLGQYSTGKTTMIRYLLGREYLGLHVGPEPTTDRYVAIVHGDVDDVISGKVLTENPALPFKETERFAGLGGKFQASRCPAPILESLTLIDTP 342
            MHVDRNYKTDFDLYYKMNGDRIKTNAGNSDWQKEQEEEVATAHTHPLEQMHTQDVEEIEEDDGFEDLGRRDDEVKRRGNSVDDENLKLAGLAGKEPRLRKSREGKPRGPPNRGAPSPLPSTSSSICANPPSKGATRTTTHAPLGTKDPLLHTLLDDPEASSSNPPQSRDDIADFHHASSHSSSTSFLKKRRKQFEIPPHQVPGQAYHATIQKLKALYRGKVLELEEKYLFHRFGFEELTQQQLEAKAQVLLLGQYSTGKTTMIRYLLGREYLGLHVGPEPTTDRYVAIVHGDVDDVISGKVLTENPALPFKETERFAGLGGKFQASRCPAPILESLTLIDTP
Sbjct:    1 MHVDRNYKTDFDLYYKMNGDRIKTNAGNSDWQKEQEEEVATAHTHPLEQMHTQDVEEIEEDDGFEDLGRRDDEVKRRGNSVDDENLKLAGLAGKEPRLRKSREGKPRGPPNRGAPSPLPSTSSSICANPPSKGATRTTTHAPLGTKDPLLHTLLDDPEASSSNPPQSRDDIADFHHASSHSSSTSFLKKRRKQFEIPPHQVPGQAYHATIQKLKALYRGKVLELEEKYLFHRFGFEELTQQQLEAKAQVLLLGQYSTGKTTMIRYLLGREYLGLHVGPEPTTDRYVAIVHGDVDDVISGKVLTENPALPFKETERFAGLGGKFQASRCPAPILESLTLIDTP 342          
BLAST of EWM23811.1 vs. NCBI_GenBank
Match: gi|241690307|ref|XP_002411757.1| (endocytosis/signaling protein EHD1, putative [Ixodes scapularis] >gi|215504592|gb|EEC14086.1| endocytosis/signaling protein EHD1, putative [Ixodes scapularis])

HSP 1 Score: 134.806 bits (338), Expect = 3.142e-33
Identity = 63/140 (45.00%), Postives = 92/140 (65.71%), Query Frame = 0
Query:  204 QAYHATIQKLKALYRGKVLELEEKYLFHRFGFEELTQQQLEAKAQVLLLGQYSTGKTTMIRYLLGREYLGLHVGPEPTTDRYVAIVHGDVDDVISGKVLTENPALPFKETERFAG-LGGKFQASRCPAPILESLTLIDTP 342
            + Y+  ++ LK +Y+ K+L LEE YLFH F    L     E+K  +LL+GQYSTGKTT IRYLL R++ G+ +GPEPTTDR++A+++ D + VI G  L  +P   F+   +F      +FQ S   +P+L+S+T+IDTP
Sbjct:   16 EIYNTVVEGLKQIYKAKILPLEEHYLFHDFHSPPLADPDFESKPMILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMYSDQEGVIPGNALVVDPKKQFRPLAKFGNSFLNRFQCSTLASPVLQSMTIIDTP 155          
BLAST of EWM23811.1 vs. NCBI_GenBank
Match: gi|298713481|emb|CBJ27036.1| (RME1, RME-1/EHD family ATPase with a C-terminal EH domain [Ectocarpus siliculosus])

HSP 1 Score: 138.658 bits (348), Expect = 6.429e-33
Identity = 66/140 (47.14%), Postives = 96/140 (68.57%), Query Frame = 0
Query:  204 QAYHATIQKLKALYRGKVLELEEKYLFHRFGFEELTQQQLEAKAQVLLLGQYSTGKTTMIRYLLGREYLGLHVGPEPTTDRYVAIVHGDVDDVISGKVLTENPALPFKETERF-AGLGGKFQASRCPAPILESLTLIDTP 342
            +A  A ++ LK LY  K+  LE+ Y+F  F    LT  + E+K QVL+ GQYSTGKT+ IRYLLGR++ G  +GPEPTTDR+VA++ G  + V+ G  LT +P LP++  +RF      KF+AS+ P+P+L ++T++DTP
Sbjct:    8 EATAAVVEGLKRLYHTKLKPLEQTYMFGWFHSPPLTDSEFESKPQVLMCGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGSDERVVPGNALTVSPNLPYRGLDRFGVSFLNKFEASQLPSPVLRNITIVDTP 147          
BLAST of EWM23811.1 vs. NCBI_GenBank
Match: gi|934151862|gb|KPM02679.1| (EH domain-containing protein 1-like protein [Sarcoptes scabiei])

HSP 1 Score: 133.265 bits (334), Expect = 1.230e-32
Identity = 61/140 (43.57%), Postives = 90/140 (64.29%), Query Frame = 0
Query:  204 QAYHATIQKLKALYRGKVLELEEKYLFHRFGFEELTQQQLEAKAQVLLLGQYSTGKTTMIRYLLGREYLGLHVGPEPTTDRYVAIVHGDVDDVISGKVLTENPALPFKETERFA-GLGGKFQASRCPAPILESLTLIDTP 342
            + Y + ++ LK +YR K+L LEE+YLFH F          +AK  VLL+GQYSTGKTT IRYLL R++ G+ +GPEPTTDR++A++H + + +I G  L  +P   F+   +F      + Q S   +PIL+ +++IDTP
Sbjct:   16 ELYESVVEGLKRIYRTKILPLEEQYLFHEFHSPPFDDADFDAKPMVLLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMHNEQEGIIPGNALVVDPKKQFRPLAKFGNAFLNRLQCSNVNSPILQQISIIDTP 155          
BLAST of EWM23811.1 vs. NCBI_GenBank
Match: gi|1126183785|ref|XP_019624479.1| (PREDICTED: EH domain-containing protein 1-like [Branchiostoma belcheri])

HSP 1 Score: 136.346 bits (342), Expect = 1.654e-32
Identity = 67/140 (47.86%), Postives = 90/140 (64.29%), Query Frame = 0
Query:  204 QAYHATIQKLKALYRGKVLELEEKYLFHRFGFEELTQQQLEAKAQVLLLGQYSTGKTTMIRYLLGREYLGLHVGPEPTTDRYVAIVHGDVDDVISGKVLTENPALPFKETERFA-GLGGKFQASRCPAPILESLTLIDTP 342
            Q Y   ++ LK +YR K+  LEE Y FH F    L     +AK  VLL+GQYSTGKTT IRYLL RE+ G+ +GPEPTTDR++A++H + + VI G  L  +P   F+   +F      +FQ S+ P+P+LESLT +DTP
Sbjct:   14 QVYGNVVEGLKQVYREKLYPLEEHYKFHDFHSPALDDPDFDAKPMVLLVGQYSTGKTTFIRYLLEREFPGIRIGPEPTTDRFIAVMHSESEGVIPGNALVMDPKKQFRPLSKFGNAFLNRFQCSQLPSPVLESLTFVDTP 153          
BLAST of EWM23811.1 vs. NCBI_GenBank
Match: gi|551625453|ref|XP_005792863.1| (RME1A, RME-1/EHD family protein, partial [Emiliania huxleyi CCMP1516] >gi|485647211|gb|EOD40434.1| RME1A, RME-1/EHD family protein, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 127.487 bits (319), Expect = 2.220e-32
Identity = 63/148 (42.57%), Postives = 89/148 (60.14%), Query Frame = 0
Query:  196 IPPHQVPGQAYHATIQKLKALYRGKVLELEEKYLFHRFGFEELTQQQLEAKAQVLLLGQYSTGKTTMIRYLLGREYLGLHVGPEPTTDRYVAIVHGDVDDVISGKVLTENPALPFKETERFA-GLGGKFQASRCPAPILESLTLIDTP 342
            +P  +   + + +    LK LYR K+  +EE Y F  F    +     +AK  VLLLGQYS GKT+ I+YLLGR++ G H+GPEPTTDR++A++HG  D    G  L  +  +PF+  E F  G   KFQ ++  +P+L  +TLIDTP
Sbjct:    1 MPKKEPVAEIFESVSDGLKQLYRSKIRPIEEAYKFGEFYSPYMNDSDFDAKPMVLLLGQYSVGKTSFIKYLLGRDFPGAHIGPEPTTDRFIAVMHGQEDKTTPGNALAVSANMPFRGLEMFGNGFLSKFQGAQLDSPLLHHVTLIDTP 148          
BLAST of EWM23811.1 vs. NCBI_GenBank
Match: gi|391339887|ref|XP_003744278.1| (PREDICTED: EH domain-containing protein 3 [Galendromus occidentalis])

HSP 1 Score: 136.346 bits (342), Expect = 2.249e-32
Identity = 65/141 (46.10%), Postives = 92/141 (65.25%), Query Frame = 0
Query:  203 GQAYHATIQKLKALYRGKVLELEEKYLFHRFGFEELTQQQLEAKAQVLLLGQYSTGKTTMIRYLLGREYLGLHVGPEPTTDRYVAIVHGDVDDVISGKVLTENPALPFKETERFAG-LGGKFQASRCPAPILESLTLIDTP 342
            G  Y + ++ LK +Y+ K+L LE  Y FH F   +L +   +AK  VLL+GQYSTGKTT IRYLL R++ G+ +GPEPTTDR++A++HGD + VI G  L  +P   FK   +F G    + Q S   +P+L S+T++DTP
Sbjct:   15 GDTYDSVVEGLKKIYKEKILPLESFYNFHDFHSPKLDEPDFDAKPMVLLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMHGDQEGVIPGNALVVDPKKQFKPLSKFGGAFLNRLQCSTVDSPVLRSMTIVDTP 155          
BLAST of EWM23811.1 vs. NCBI_GenBank
Match: gi|1022768497|gb|KZS13220.1| (EH domain-containing protein 2 [Daphnia magna])

HSP 1 Score: 134.806 bits (338), Expect = 8.213e-32
Identity = 58/140 (41.43%), Postives = 94/140 (67.14%), Query Frame = 0
Query:  204 QAYHATIQKLKALYRGKVLELEEKYLFHRFGFEELTQQQLEAKAQVLLLGQYSTGKTTMIRYLLGREYLGLHVGPEPTTDRYVAIVHGDVDDVISGKVLTENPALPFKETERFA-GLGGKFQASRCPAPILESLTLIDTP 342
            + Y + ++ LK +Y+ K+L LE++Y FH F   EL+    +A+  +LL+GQYSTGKTT IRYLL +++ G+ +GPEPTTDR++A++HGD + VI G  L  +P   F+   +F      +FQ S   +P+L+ ++++D+P
Sbjct:   16 EIYDSVVEGLKKIYKSKILPLEQQYFFHDFHSPELSDPDFDARPMILLVGQYSTGKTTFIRYLLEKDFPGIRIGPEPTTDRFIAVMHGDTEGVIPGNALVVDPKKQFRPLSKFGNAFLNRFQCSTVDSPVLKGISIVDSP 155          
BLAST of EWM23811.1 vs. NCBI_GenBank
Match: gi|662203763|ref|XP_008475230.1| (PREDICTED: EH domain-containing protein 3-like [Diaphorina citri])

HSP 1 Score: 132.494 bits (332), Expect = 1.292e-31
Identity = 63/140 (45.00%), Postives = 90/140 (64.29%), Query Frame = 0
Query:  204 QAYHATIQKLKALYRGKVLELEEKYLFHRFGFEELTQQQLEAKAQVLLLGQYSTGKTTMIRYLLGREYLGLHVGPEPTTDRYVAIVHGDVDDVISGKVLTENPALPFKETERFAG-LGGKFQASRCPAPILESLTLIDTP 342
              Y      LK++Y+ K+L LEEKYLFH F   +LT Q  +AK  ++L+GQYSTGKTT+I+YLLG+++ GL +GPEPTTDR++ I+ G+ +  I G  L  +P   F+    F      +FQ S   APIL+ ++ +DTP
Sbjct:   45 NVYGDVADGLKSVYKNKLLPLEEKYLFHEFHSPKLTDQDFDAKPLIMLIGQYSTGKTTLIKYLLGKDFPGLRIGPEPTTDRFIVIMDGEQEATIPGNALVADPTKQFRPLSIFGNSFLNRFQCSHIDAPILKYVSFVDTP 184          
BLAST of EWM23811.1 vs. NCBI_GenBank
Match: gi|321469395|gb|EFX80375.1| (hypothetical protein DAPPUDRAFT_304007 [Daphnia pulex])

HSP 1 Score: 134.42 bits (337), Expect = 1.311e-31
Identity = 58/140 (41.43%), Postives = 94/140 (67.14%), Query Frame = 0
Query:  204 QAYHATIQKLKALYRGKVLELEEKYLFHRFGFEELTQQQLEAKAQVLLLGQYSTGKTTMIRYLLGREYLGLHVGPEPTTDRYVAIVHGDVDDVISGKVLTENPALPFKETERFA-GLGGKFQASRCPAPILESLTLIDTP 342
            + Y + ++ LK +Y+ K+L LE++Y FH F   EL+    +A+  +LL+GQYSTGKTT IRYLL +++ G+ +GPEPTTDR++A++HGD + VI G  L  +P   F+   +F      +FQ S   +P+L+ ++++D+P
Sbjct:   16 EIYDSVVEGLKKIYKSKILPLEQQYFFHDFHSPELSDPDFDARPMILLVGQYSTGKTTFIRYLLEKDFPGIRIGPEPTTDRFIAVMHGDTEGVIPGNALVVDPKKQFRPLSKFGNAFLNRFQCSTVDSPVLKGISIVDSP 155          
The following BLAST results are available for this feature:
BLAST of EWM23811.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105058|gb|EWM23811.1|0.000e+0100.00endocytosis signaling protein, partial [Nannochlor... [more]
gi|241690307|ref|XP_002411757.1|3.142e-3345.00endocytosis/signaling protein EHD1, putative [Ixod... [more]
gi|298713481|emb|CBJ27036.1|6.429e-3347.14RME1, RME-1/EHD family ATPase with a C-terminal EH... [more]
gi|934151862|gb|KPM02679.1|1.230e-3243.57EH domain-containing protein 1-like protein [Sarco... [more]
gi|1126183785|ref|XP_019624479.1|1.654e-3247.86PREDICTED: EH domain-containing protein 1-like [Br... [more]
gi|551625453|ref|XP_005792863.1|2.220e-3242.57RME1A, RME-1/EHD family protein, partial [Emiliani... [more]
gi|391339887|ref|XP_003744278.1|2.249e-3246.10PREDICTED: EH domain-containing protein 3 [Galendr... [more]
gi|1022768497|gb|KZS13220.1|8.213e-3241.43EH domain-containing protein 2 [Daphnia magna][more]
gi|662203763|ref|XP_008475230.1|1.292e-3145.00PREDICTED: EH domain-containing protein 3-like [Di... [more]
gi|321469395|gb|EFX80375.1|1.311e-3141.43hypothetical protein DAPPUDRAFT_304007 [Daphnia pu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6878rna6878Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications