EWM23815.1, cds6858 (CDS) Nannochloropsis gaditana

Overview
NameEWM23815.1
Unique Namecds6858
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:692187..693545 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23815.1
ProductZn(2)-C6 fungal-type DNA-binding domain protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101102g3.3609.mrna
GbkeyCDS
End range.
End range693545
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:692187..693545 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
[Close]
BLAST of EWM23815.1 vs. NCBI_GenBank
Match: gi|585105066|gb|EWM23815.1| (Zn(2)-C6 fungal-type DNA-binding domain protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 895.96 bits (2314), Expect = 0.000e+0
Identity = 452/452 (100.00%), Postives = 452/452 (100.00%), Query Frame = 0 
Query:    1 PLPLPTPLPSPPSGTWSGSSVISSLSSSGASSHYSSIPPSSSFHPSPSSSQSGGSQGSGGGGGGQGGRYLTTQPGRDDGALLCLNADVVKRPISATLREPPPPFLSSPQASTVVAPGTLPPASLSFATPATLAAARSMLQGFLQGKYPLSSTCTSSTSSVASTGTAASRPIIVRRARRACAYCHTKKISCTCTRPCRRCQDLNLVCSDYVPRPRHLGRSKGSRSPPQPRVGRTGAGYGGYARQEGEREGGREIGERPSPPLVMPAARGAALFPVPATATSSLQSYPTQSPWEVKPRGGHEEGRRQPDHGRGGFPRGAAGSSLPGFQQAAAPFAPLPAPLFLPYSGYGQSRVANESVPAPPSNLPTPVALRRQQEEVVKQMMWAEGREVGREVGREVEPAVPSLAGLPSALQTGNSGEVGEGRNDMAGRDEERGWDAHVLGEYDINRFFEDNE 452
            PLPLPTPLPSPPSGTWSGSSVISSLSSSGASSHYSSIPPSSSFHPSPSSSQSGGSQGSGGGGGGQGGRYLTTQPGRDDGALLCLNADVVKRPISATLREPPPPFLSSPQASTVVAPGTLPPASLSFATPATLAAARSMLQGFLQGKYPLSSTCTSSTSSVASTGTAASRPIIVRRARRACAYCHTKKISCTCTRPCRRCQDLNLVCSDYVPRPRHLGRSKGSRSPPQPRVGRTGAGYGGYARQEGEREGGREIGERPSPPLVMPAARGAALFPVPATATSSLQSYPTQSPWEVKPRGGHEEGRRQPDHGRGGFPRGAAGSSLPGFQQAAAPFAPLPAPLFLPYSGYGQSRVANESVPAPPSNLPTPVALRRQQEEVVKQMMWAEGREVGREVGREVEPAVPSLAGLPSALQTGNSGEVGEGRNDMAGRDEERGWDAHVLGEYDINRFFEDNE
Sbjct:    1 PLPLPTPLPSPPSGTWSGSSVISSLSSSGASSHYSSIPPSSSFHPSPSSSQSGGSQGSGGGGGGQGGRYLTTQPGRDDGALLCLNADVVKRPISATLREPPPPFLSSPQASTVVAPGTLPPASLSFATPATLAAARSMLQGFLQGKYPLSSTCTSSTSSVASTGTAASRPIIVRRARRACAYCHTKKISCTCTRPCRRCQDLNLVCSDYVPRPRHLGRSKGSRSPPQPRVGRTGAGYGGYARQEGEREGGREIGERPSPPLVMPAARGAALFPVPATATSSLQSYPTQSPWEVKPRGGHEEGRRQPDHGRGGFPRGAAGSSLPGFQQAAAPFAPLPAPLFLPYSGYGQSRVANESVPAPPSNLPTPVALRRQQEEVVKQMMWAEGREVGREVGREVEPAVPSLAGLPSALQTGNSGEVGEGRNDMAGRDEERGWDAHVLGEYDINRFFEDNE 452
[Close]
BLAST of EWM23815.1 vs. NCBI_GenBank
Match: gi|553184054|ref|XP_005854020.1| (hypothetical protein NGA_0433000, partial [Nannochloropsis gaditana CCMP526] >gi|422295039|gb|EKU22338.1| hypothetical protein NGA_0433000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 895.96 bits (2314), Expect = 0.000e+0
Identity = 452/452 (100.00%), Postives = 452/452 (100.00%), Query Frame = 0 
Query:    1 PLPLPTPLPSPPSGTWSGSSVISSLSSSGASSHYSSIPPSSSFHPSPSSSQSGGSQGSGGGGGGQGGRYLTTQPGRDDGALLCLNADVVKRPISATLREPPPPFLSSPQASTVVAPGTLPPASLSFATPATLAAARSMLQGFLQGKYPLSSTCTSSTSSVASTGTAASRPIIVRRARRACAYCHTKKISCTCTRPCRRCQDLNLVCSDYVPRPRHLGRSKGSRSPPQPRVGRTGAGYGGYARQEGEREGGREIGERPSPPLVMPAARGAALFPVPATATSSLQSYPTQSPWEVKPRGGHEEGRRQPDHGRGGFPRGAAGSSLPGFQQAAAPFAPLPAPLFLPYSGYGQSRVANESVPAPPSNLPTPVALRRQQEEVVKQMMWAEGREVGREVGREVEPAVPSLAGLPSALQTGNSGEVGEGRNDMAGRDEERGWDAHVLGEYDINRFFEDNE 452
            PLPLPTPLPSPPSGTWSGSSVISSLSSSGASSHYSSIPPSSSFHPSPSSSQSGGSQGSGGGGGGQGGRYLTTQPGRDDGALLCLNADVVKRPISATLREPPPPFLSSPQASTVVAPGTLPPASLSFATPATLAAARSMLQGFLQGKYPLSSTCTSSTSSVASTGTAASRPIIVRRARRACAYCHTKKISCTCTRPCRRCQDLNLVCSDYVPRPRHLGRSKGSRSPPQPRVGRTGAGYGGYARQEGEREGGREIGERPSPPLVMPAARGAALFPVPATATSSLQSYPTQSPWEVKPRGGHEEGRRQPDHGRGGFPRGAAGSSLPGFQQAAAPFAPLPAPLFLPYSGYGQSRVANESVPAPPSNLPTPVALRRQQEEVVKQMMWAEGREVGREVGREVEPAVPSLAGLPSALQTGNSGEVGEGRNDMAGRDEERGWDAHVLGEYDINRFFEDNE
Sbjct:    2 PLPLPTPLPSPPSGTWSGSSVISSLSSSGASSHYSSIPPSSSFHPSPSSSQSGGSQGSGGGGGGQGGRYLTTQPGRDDGALLCLNADVVKRPISATLREPPPPFLSSPQASTVVAPGTLPPASLSFATPATLAAARSMLQGFLQGKYPLSSTCTSSTSSVASTGTAASRPIIVRRARRACAYCHTKKISCTCTRPCRRCQDLNLVCSDYVPRPRHLGRSKGSRSPPQPRVGRTGAGYGGYARQEGEREGGREIGERPSPPLVMPAARGAALFPVPATATSSLQSYPTQSPWEVKPRGGHEEGRRQPDHGRGGFPRGAAGSSLPGFQQAAAPFAPLPAPLFLPYSGYGQSRVANESVPAPPSNLPTPVALRRQQEEVVKQMMWAEGREVGREVGREVEPAVPSLAGLPSALQTGNSGEVGEGRNDMAGRDEERGWDAHVLGEYDINRFFEDNE 453
The following BLAST results are available for this feature:
BLAST of EWM23815.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105066|gb|EWM23815.1|0.000e+0100.00Zn(2)-C6 fungal-type DNA-binding domain protein, p... [more]
gi|553184054|ref|XP_005854020.1|0.000e+0100.00hypothetical protein NGA_0433000, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6874rna6874Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications