EWM23828.1, cds6844 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23828.1 vs. NCBI_GenBank
Match: gi|585105091|gb|EWM23828.1| (yip1 domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 516.538 bits (1329), Expect = 0.000e+0 Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0
Query: 1 MASTNSGEGDFMAPSYTESASAALLRDAETGGGQMRSDATGAGEDVPAGGLCSCLSIRYYQPYFDVDTQHVVDRIKYALFPFKKESTFIQLLGPNPDAYGPFWVATSLIFVIAVVSNVSSYFQFVGTEGSAWTYDFAAVVTCATTIYGFAAIIPLLIWAALRYMQLPLPLIQTVAIYGYSLVAFVPCTLLNFIPAPAFPWLSEIAAAAASVVFLLKALGPVVMEKAPQHAMPFLASIGAVQLALALTIKLVFFKN 255
MASTNSGEGDFMAPSYTESASAALLRDAETGGGQMRSDATGAGEDVPAGGLCSCLSIRYYQPYFDVDTQHVVDRIKYALFPFKKESTFIQLLGPNPDAYGPFWVATSLIFVIAVVSNVSSYFQFVGTEGSAWTYDFAAVVTCATTIYGFAAIIPLLIWAALRYMQLPLPLIQTVAIYGYSLVAFVPCTLLNFIPAPAFPWLSEIAAAAASVVFLLKALGPVVMEKAPQHAMPFLASIGAVQLALALTIKLVFFKN
Sbjct: 1 MASTNSGEGDFMAPSYTESASAALLRDAETGGGQMRSDATGAGEDVPAGGLCSCLSIRYYQPYFDVDTQHVVDRIKYALFPFKKESTFIQLLGPNPDAYGPFWVATSLIFVIAVVSNVSSYFQFVGTEGSAWTYDFAAVVTCATTIYGFAAIIPLLIWAALRYMQLPLPLIQTVAIYGYSLVAFVPCTLLNFIPAPAFPWLSEIAAAAASVVFLLKALGPVVMEKAPQHAMPFLASIGAVQLALALTIKLVFFKN 255
BLAST of EWM23828.1 vs. NCBI_GenBank
Match: gi|1214709142|gb|OWZ20350.1| (hypothetical protein PHMEG_0005245 [Phytophthora megakarya]) HSP 1 Score: 172.555 bits (436), Expect = 2.057e-49 Identity = 95/233 (40.77%), Postives = 136/233 (58.37%), Query Frame = 0
Query: 25 LRDAETGGGQMRSDATGAGED-VPAG--GLCSCLSIRYYQPYFDVDTQHVVDRIKYALFPFKKESTFIQLLGPNPDAYGPFWVATSLIFVIAVVSNVSSYFQFVGTEGSAWTYDFAAVVTCATTIYGFAAIIPLLIWAALRYMQLPLPLIQTVAIYGYSLVAFVPCTLLNFIPAPAFPWLSEIAAAAASVVFLLKALGPVVMEKAPQHAM-PFLASIGAVQLALALTIKLVFF 253
+RD+ G ++ A GED PA GLC C S+ YYQPYFDVDT V R+ AL PFKK+ +F +L +PDAYGPFW++T+LIF +A SN +S+ + G W+YDF+ + + T + F +P+LIW +Y Q+P+ L+ V +YGYS + F+P +L P A W+ + A A S+ FLL L V+ E + M P LA I + A+ +KL+FF
Sbjct: 41 VRDSLMGA---KAKAKAYGEDDKPARPMGLCGCFSLAYYQPYFDVDTADVQQRLMRALVPFKKDPSFAELALQSPDAYGPFWLSTTLIFCLASCSNAASFLDYEGNT-EEWSYDFSRLASAYTLVEIFLLGLPMLIWLVGKYFQVPMTLLFLVCLYGYSSIMFIPAAILCVSPVDAMDWVVMLVAMAWSLFFLLNNLWHVISEHLTKEKMLPVLAVISGAHMLWAILMKLLFF 269
BLAST of EWM23828.1 vs. NCBI_GenBank
Match: gi|298711204|emb|CBJ32425.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 172.17 bits (435), Expect = 2.059e-49 Identity = 92/225 (40.89%), Postives = 134/225 (59.56%), Query Frame = 0
Query: 30 TGGGQMRSD-ATGAGEDVPAGGLCSCLSIRYYQPYFDVDTQHVVDRIKYALFPFKKESTFIQLLGPNPDAYGPFWVATSLIFVIAVVSNVSSYFQFVGTEGSAWTYDFAAVVTCATTIYGFAAIIPLLIWAALRYMQLPLPLIQTVAIYGYSLVAFVPCTLLNFIPAPAFPWLSEIAAAAASVVFLLKALGPVVMEKAPQHAMPFLASIGAVQLALALTIKLVFF 253
+GGG++ D A G GE C CLS+ +YQ +F VDT+ V +R +++ +++E+ F+ L+ NPDAYGPFW +TSLIF+IA +N+S EG YD +V +YGFAA PL +W L M LP+PL++ +YGYSL ++P L+ +P P ++ AA SVVFLL+AL PV++E+ A P +A +G +Q+ L IK FF
Sbjct: 38 SGGGKLSDDSAAGGGEAQTV--WCGCLSLAFYQQFFRVDTKDVTERWLHSILSWRRETGFLDLVADNPDAYGPFWNSTSLIFLIAFTTNLS--------EGG---YDLNTLVVSTWIVYGFAACAPLAVWLVLNQMDLPVPLVKLGCMYGYSLGPYLPAILVCALPVPYMTLVALSAAGTLSVVFLLRALTPVLLERNVAMASPVMAGLGVLQVIFTLVIKFAFF 249
BLAST of EWM23828.1 vs. NCBI_GenBank
Match: gi|695375957|ref|XP_009515667.1| (hypothetical protein PHYSODRAFT_284255 [Phytophthora sojae] >gi|348688578|gb|EGZ28392.1| hypothetical protein PHYSODRAFT_284255 [Phytophthora sojae]) HSP 1 Score: 171.785 bits (434), Expect = 4.628e-49 Identity = 91/213 (42.72%), Postives = 127/213 (59.62%), Query Frame = 0
Query: 44 EDVPAG--GLCSCLSIRYYQPYFDVDTQHVVDRIKYALFPFKKESTFIQLLGPNPDAYGPFWVATSLIFVIAVVSNVSSYFQFVGTEGSAWTYDFAAVVTCATTIYGFAAIIPLLIWAALRYMQLPLPLIQTVAIYGYSLVAFVPCTLLNFIPAPAFPWLSEIAAAAASVVFLLKALGPVVMEKAPQHAM-PFLASIGAVQLALALTIKLVFF 253
+D PA GLC CLS+ YYQPYFDVDT V R+ AL PFKK+ TF +L PDAYGPFW++T+LIF +A SN +S+ + G W+YDF+ + + T + F +P+LIW +Y Q+P+ L+ V +YGYS + F+P +L P A W+ + A A S+ FLL L V+ E + M P LA I + A+ +KL+FF
Sbjct: 55 DDKPARPMGLCGCLSLAYYQPYFDVDTTDVQQRLMRALVPFKKDPTFAELALQAPDAYGPFWLSTTLIFCLASCSNAASFLDYEGNTDE-WSYDFSRLASAYTLVEIFLLGLPMLIWLVGKYFQVPMTLLFLVCLYGYSSIMFIPAAILCVSPIDAMDWVVMLLAMAWSLFFLLNNLWHVISEHLTKEKMLPVLAVISGAHMTWAILMKLLFF 266
BLAST of EWM23828.1 vs. NCBI_GenBank
Match: gi|635371962|emb|CCI39924.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 170.244 bits (430), Expect = 1.257e-48 Identity = 84/221 (38.01%), Postives = 120/221 (54.30%), Query Frame = 0
Query: 34 QMRSDATGAGEDVPAGGLCSCLSIRYYQPYFDVDTQHVVDRIKYALFPFKKESTFIQLLGPNPDAYGPFWVATSLIFVIAVVSNVSSYFQFVGTEGSAWTYDFAAVVTCATTIYGFAAIIPLLIWAALRYMQLPLPLIQTVAIYGYSLVAFVPCTLLNFIPAPAFPWLSEIAAAAASVVFLLKALGPVVMEKAPQHAM-PFLASIGAVQLALALTIKLVFF 253
+R+ G D +C C ++ YYQPYFDVDT V RI A+ P KK F +++G +PDAYGPFW++T+LIF++A SN + Y F G + WTYDF+ + T T + F +P+L W A+RY L L V +YGYS ++P + L +P A W+ + S+ FLL + + M PF A I AV L + +KL+FF
Sbjct: 40 NVRNKLMGKENDKGVNKICGCFTLAYYQPYFDVDTSDVQQRISRAILPLKKNPHFTEIIGTSPDAYGPFWLSTTLIFMLASCSNGAGYLDFQG-DKDEWTYDFSRLATAYTLVVSFVLGVPVLTWGAVRYFGATLSLTYLVCLYGYSTTLYIPASFLCMLPEDASDWIVLLFTMTWSLFFLLNNFCNAIRGQLSNEKMLPFFAMISAVHLMWTIMLKLLFF 259
BLAST of EWM23828.1 vs. NCBI_GenBank
Match: gi|675189523|ref|XP_008903646.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566026139|gb|ETI49050.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567963419|gb|ETK88918.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567992117|gb|ETL42316.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568021400|gb|ETL95490.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568051790|gb|ETM48689.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568096413|gb|ETN11164.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570329840|gb|ETO77788.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570953560|gb|ETP18817.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|570988271|gb|ETP46738.1| hypothetical protein, variant [Phytophthora parasitica P10297]) HSP 1 Score: 168.318 bits (425), Expect = 3.052e-48 Identity = 92/232 (39.66%), Postives = 131/232 (56.47%), Query Frame = 0
Query: 25 LRDAETGGGQMRSDATGAGEDVPAG--GLCSCLSIRYYQPYFDVDTQHVVDRIKYALFPFKKESTFIQLLGPNPDAYGPFWVATSLIFVIAVVSNVSSYFQFVGTEGSAWTYDFAAVVTCATTIYGFAAIIPLLIWAALRYMQLPLPLIQTVAIYGYSLVAFVPCTLLNFIPAPAFPWLSEIAAAAASVVFLLKALGPVVMEKAPQHAM-PFLASIGAVQLALALTIKLVFF 253
+RD G A +D P GLC C S+ +YQPYFDVDT V R+ AL PFKK+ TF +L +PDAYGPFW++T+LIF +A SN +S+ + G W+YDF+ + + T + F +P+LIW +Y Q+P+ L+ V +YGYS + F+P +L P A W+ + A A S+ FLL L V+ E + M P LA I + A+ +KL+FF
Sbjct: 5 VRDTLIGAKT----AAYGDDDKPVRPMGLCGCFSLAFYQPYFDVDTSDVQQRLMRALVPFKKDPTFAELALKSPDAYGPFWLSTTLIFCLASCSNAASFLDYEGNTDE-WSYDFSRLASAYTLVEIFLLGLPMLIWLVGKYFQVPMTLLFLVCLYGYSSIMFIPAAILCVSPVDAMDWVVMLVAMAWSLYFLLNNLWHVISEHLTKEKMLPVLAVISGAHMMWAILMKLLFF 231
BLAST of EWM23828.1 vs. NCBI_GenBank
Match: gi|675189521|ref|XP_008903645.1| (hypothetical protein PPTG_10123 [Phytophthora parasitica INRA-310] >gi|566026138|gb|ETI49049.1| hypothetical protein F443_07037 [Phytophthora parasitica P1569] >gi|567963418|gb|ETK88917.1| hypothetical protein L915_06939 [Phytophthora parasitica] >gi|567992116|gb|ETL42315.1| hypothetical protein L916_06887 [Phytophthora parasitica] >gi|568021399|gb|ETL95489.1| hypothetical protein L917_06754 [Phytophthora parasitica] >gi|568051789|gb|ETM48688.1| hypothetical protein L914_06846 [Phytophthora parasitica] >gi|568096412|gb|ETN11163.1| hypothetical protein PPTG_10123 [Phytophthora parasitica INRA-310] >gi|570329839|gb|ETO77787.1| hypothetical protein F444_07105 [Phytophthora parasitica P1976] >gi|570953559|gb|ETP18816.1| hypothetical protein F441_07050 [Phytophthora parasitica CJ01A1] >gi|570988270|gb|ETP46737.1| hypothetical protein F442_07101 [Phytophthora parasitica P10297] >gi|970628025|gb|KUF75786.1| YIPF1 protein [Phytophthora nicotianae] >gi|970664202|gb|KUG01181.1| YIPF1 protein [Phytophthora nicotianae]) HSP 1 Score: 169.474 bits (428), Expect = 3.442e-48 Identity = 92/232 (39.66%), Postives = 131/232 (56.47%), Query Frame = 0
Query: 25 LRDAETGGGQMRSDATGAGEDVPAG--GLCSCLSIRYYQPYFDVDTQHVVDRIKYALFPFKKESTFIQLLGPNPDAYGPFWVATSLIFVIAVVSNVSSYFQFVGTEGSAWTYDFAAVVTCATTIYGFAAIIPLLIWAALRYMQLPLPLIQTVAIYGYSLVAFVPCTLLNFIPAPAFPWLSEIAAAAASVVFLLKALGPVVMEKAPQHAM-PFLASIGAVQLALALTIKLVFF 253
+RD G A +D P GLC C S+ +YQPYFDVDT V R+ AL PFKK+ TF +L +PDAYGPFW++T+LIF +A SN +S+ + G W+YDF+ + + T + F +P+LIW +Y Q+P+ L+ V +YGYS + F+P +L P A W+ + A A S+ FLL L V+ E + M P LA I + A+ +KL+FF
Sbjct: 40 VRDTLIGAKT----AAYGDDDKPVRPMGLCGCFSLAFYQPYFDVDTSDVQQRLMRALVPFKKDPTFAELALKSPDAYGPFWLSTTLIFCLASCSNAASFLDYEGNTDE-WSYDFSRLASAYTLVEIFLLGLPMLIWLVGKYFQVPMTLLFLVCLYGYSSIMFIPAAILCVSPVDAMDWVVMLVAMAWSLYFLLNNLWHVISEHLTKEKMLPVLAVISGAHMMWAILMKLLFF 266
BLAST of EWM23828.1 vs. NCBI_GenBank
Match: gi|301117756|ref|XP_002906606.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262107955|gb|EEY66007.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 167.162 bits (422), Expect = 9.195e-48 Identity = 91/232 (39.22%), Postives = 132/232 (56.90%), Query Frame = 0
Query: 25 LRDAETGGGQMRSDATGAGEDVPAG--GLCSCLSIRYYQPYFDVDTQHVVDRIKYALFPFKKESTFIQLLGPNPDAYGPFWVATSLIFVIAVVSNVSSYFQFVGTEGSAWTYDFAAVVTCATTIYGFAAIIPLLIWAALRYMQLPLPLIQTVAIYGYSLVAFVPCTLLNFIPAPAFPWLSEIAAAAASVVFLLKALGPVVMEKAPQHAM-PFLASIGAVQLALALTIKLVFF 253
+RD G +A +D PA GLC C S+ +YQPYF+VDT V R+ AL PFKK+ TF +L +PDAYGPFW++T+LIF +A SN +S+ + G W+YDF+ + + T + F +P+LIW +Y Q+P+ L+ V +YGYS + F+P +L P W+ + A A S+ FLL L V+ E + M P LA I + A+ +KL+FF
Sbjct: 5 VRDTLMGA----KNAAYGEDDTPARPVGLCGCFSLAFYQPYFNVDTSDVQQRLMRALVPFKKDPTFAELALKSPDAYGPFWLSTTLIFCLASCSNAASFLDYEG-NADEWSYDFSRLASAYTLVEIFLLGLPMLIWLVGKYFQVPMTLLFLVCLYGYSSIMFIPAAILCVSPVDGLDWVVMLIAMAWSLYFLLYNLWHVISEHLTKEKMLPVLAVISGAHMMWAILLKLLFF 231
BLAST of EWM23828.1 vs. NCBI_GenBank
Match: gi|325180332|emb|CCA14735.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 165.622 bits (418), Expect = 7.501e-47 Identity = 81/221 (36.65%), Postives = 122/221 (55.20%), Query Frame = 0
Query: 34 QMRSDATGAGEDVPAGGLCSCLSIRYYQPYFDVDTQHVVDRIKYALFPFKKESTFIQLLGPNPDAYGPFWVATSLIFVIAVVSNVSSYFQFVGTEGSAWTYDFAAVVTCATTIYGFAAIIPLLIWAALRYMQLPLPLIQTVAIYGYSLVAFVPCTLLNFIPAPAFPWLSEIAAAAASVVFLLKALGPVVMEKAPQHAM-PFLASIGAVQLALALTIKLVFF 253
+R+ G +C C ++ +YQPYFDVDT+ V R+ A+ P KK F +++G PDAYGPFW++T+LIF++A SN + Y + G +G WTYDF+ + T T + GF +P+L W A+RY + L L + +YGYS ++P ++L +P A W+ + S+ FLL + + M PF A I AV L + +KL FF
Sbjct: 40 NVRNKLMGKESAQSVNKICGCFTLAFYQPYFDVDTRDVQQRMLRAILPLKKNPHFTEIIGTCPDAYGPFWLSTTLIFMLASCSNGAGYLDYQGDKGE-WTYDFSRLATAYTLVAGFVLGVPILTWGAVRYFGVALSLTYLICLYGYSTTLYIPASILCMLPEDASDWVVLLFTMTWSLFFLLNNFSNAMRGQLSNEKMLPFFAFISAVHLMWTIVLKLCFF 259
BLAST of EWM23828.1 vs. NCBI_GenBank
Match: gi|1173946290|gb|OQR94837.1| (hypothetical protein ACHHYP_00894 [Achlya hypogyna]) HSP 1 Score: 163.31 bits (412), Expect = 6.529e-46 Identity = 95/261 (36.40%), Postives = 142/261 (54.41%), Query Frame = 0
Query: 12 MAPSYTESASAALLRDAETG-------GGQMRSDAT-----------GAGEDVPAGGLCSCLSIRYYQPYFDVDTQHVVDRIKYALFPFKKESTFIQLLGPNPDAYGPFWVATSLIFVIAVVSNVSSYFQFVGTEGSAWTYDFAAVVTCATTIYGFAAIIPLLIWAALRYMQLPLPLIQTVAIYGYSLVAFVPCTLLNFIPAPAFPWLSEIAAAAASVVFLLKALGPVVMEKAPQHAMPFLAS-IGAVQLALALTIKLVFF 253
M PS A+AA + D G G + D T G + PA GLC C ++ +YQPYF+VDT + R+ AL PFKK+ +F L NPDAYGPFW++ +LIF +A SN++S+ + G + S W+YDF+ V T T + + +P +W+ +Y+ +PLPL V +YGYS+V F+P + P+ A W+ + A A S++FLL + + E P+ + L S IG L + +KL+FF
Sbjct: 2 MEPSPDVKAAAAAMNDRSHGLHFDVSVGDEDLEDGTMSPKAQDTLLHGNKNNRPALGLCGCFTLGFYQPYFNVDTVDIQVRLTRALIPFKKDPSFKDLALTNPDAYGPFWISATLIFCMASCSNIASWLDYEGEDPSKWSYDFSYVATSMTMVGIYLLALPFALWSVGKYISVPLPLSFLVCLYGYSMVIFIPTMFVCTAPSDAADWVMMLFAMAWSLLFLLSNMWGYIAEYLPKEKLLPLLSFIGTTHLIWVVLLKLLFF 262 The following BLAST results are available for this feature:
BLAST of EWM23828.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|