EWM29990.1, cds684 (CDS) Nannochloropsis gaditana

Overview
NameEWM29990.1
Unique Namecds684
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:159368..159457 -
Alignment locationCM002456.1:158610..159191 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29990.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100276g6.9391.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:159368..159457 -
CM002456.1supercontigCM002456.1:158610..159191 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR013830SGNH_hydro
Homology
BLAST of EWM29990.1 vs. NCBI_GenBank
Match: gi|553182994|ref|XP_005853822.1| (hypothetical protein NGA_0470400 [Nannochloropsis gaditana CCMP526] >gi|422295241|gb|EKU22540.1| hypothetical protein NGA_0470400 [Nannochloropsis gaditana CCMP526] >gi|585112598|gb|EWM29990.1| hypothetical protein Naga_100276g6 [Nannochloropsis gaditana])

HSP 1 Score: 464.537 bits (1194), Expect = 1.049e-165
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0
Query:    1 MPTHLREFGLLVCMTAMSTVPVLSTGMSSTVLVGDSIMAGRDGVWGIGAINKYLNQFSGQKLDNYALIGSSLHDGWVKSVPQVYGDMRKKTAPAVPTTIVLNGGGNDVITVRDDCWAFNDKCRKQIDEAMDIAEKLLLCMHDDGVEHVIYLGFYYAFNMTEAVDYGMEGIKRVCEGAPIDCHVADARNLSIPTGWDGIHPLDEGYKRLSTRIWEVKEANNIPI 223
            MPTHLREFGLLVCMTAMSTVPVLSTGMSSTVLVGDSIMAGRDGVWGIGAINKYLNQFSGQKLDNYALIGSSLHDGWVKSVPQVYGDMRKKTAPAVPTTIVLNGGGNDVITVRDDCWAFNDKCRKQIDEAMDIAEKLLLCMHDDGVEHVIYLGFYYAFNMTEAVDYGMEGIKRVCEGAPIDCHVADARNLSIPTGWDGIHPLDEGYKRLSTRIWEVKEANNIPI
Sbjct:    1 MPTHLREFGLLVCMTAMSTVPVLSTGMSSTVLVGDSIMAGRDGVWGIGAINKYLNQFSGQKLDNYALIGSSLHDGWVKSVPQVYGDMRKKTAPAVPTTIVLNGGGNDVITVRDDCWAFNDKCRKQIDEAMDIAEKLLLCMHDDGVEHVIYLGFYYAFNMTEAVDYGMEGIKRVCEGAPIDCHVADARNLSIPTGWDGIHPLDEGYKRLSTRIWEVKEANNIPI 223          
BLAST of EWM29990.1 vs. NCBI_GenBank
Match: gi|585104073|gb|EWM23185.1| (lipolytic protein g-d-s-l family [Nannochloropsis gaditana])

HSP 1 Score: 218.394 bits (555), Expect = 1.969e-67
Identity = 102/219 (46.58%), Postives = 145/219 (66.21%), Query Frame = 0
Query:    5 LREFGLLVCMTAMSTVPVLSTGMSSTVLVGDSIMAGRDGVWGIGAINKYLNQFSGQKLDNYALIGSSLHDGWVKSVPQVYGDMRKKTAPAVPTTIVLNGGGNDVITVRDDCWAFNDKCRKQIDEAMDIAEKLLLCMHDDGVEHVIYLGFYYAFNMTEAVDYGMEGIKRVCEGAPIDCHVADARNLSIPTGWDGIHPLDEGYKRLSTRIWEVKEANNIPI 223
            +  F   +     + VP+    M+ TV++GDS+ AG   V      N +L +++G +++N A++G+SLH+GW +S+P  Y ++ K     VPTTI+++GGGNDVI+ R DC + +D CR QIDEA+ I   LL  MH+DGV HVI++GF+Y   + +A DYG E +   C  A IDCH+AD R+L IP GWDG+HP DEGYK L+ RIWEVK  N++PI
Sbjct:   85 IMRFSTSIASVLFAAVPM---AMARTVMIGDSMFAGGSKV------NNWLQEWAGHEIENIAIVGASLHEGWTESIPAEYAELDKTV---VPTTIIMDGGGNDVISKRSDCESMDDACRLQIDEAVSIGSDLLEQMHEDGVAHVIWMGFFYIGGLEKAADYGTEKVAEACATAKIDCHLADLRDLQIPRGWDGVHPTDEGYKMLAERIWEVKLENHVPI 291          
BLAST of EWM29990.1 vs. NCBI_GenBank
Match: gi|553183672|ref|XP_005853939.1| (lipolytic protein g-d-s-l family [Nannochloropsis gaditana CCMP526] >gi|422295117|gb|EKU22416.1| lipolytic protein g-d-s-l family [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 196.823 bits (499), Expect = 3.110e-60
Identity = 99/206 (48.06%), Postives = 137/206 (66.50%), Query Frame = 0
Query:   20 VPVLSTGMSSTVLVGDSIMAGRDGVWGIGAINKYLNQFSGQK--LDNYALIGSSLHDGWVKSVPQVYGDMRKKTAPAVPTTIVLNGGGNDVITVRDDCWAFNDKCRKQIDEAMDIAEKLLLCMHDDGVEHVIYLGFYYAFNMTEAVDYGMEGIKRVCEGAPIDCHVADARNLSIPTGWDGIHPLDEGYKRLSTRIWEVKEANNIPI 223
            +P L  G   TV++GDS+ +         A+   L  ++G    ++N AL+G+SLH+GWV S+P  Y  M K   P    TIV++GGGNDVI+V+DDC +FND+C++QI EA DI   LL  MH+D V+HV+ +G YY  N+ +AVD G + +  VC+ A IDCH+AD R+L  P G DGIHP+ EGY+ L+TRIWE+K  N+IPI
Sbjct:   12 LPALCLG--RTVMIGDSMFSN-------NAVKNALEYYAGGNVTIENMALVGASLHEGWVPSIPAEYSIMSKNPPP---ITIVMDGGGNDVISVKDDCLSFNDRCQQQIKEATDILADLLERMHEDKVQHVLLMGPYYLENLNKAVDEGFKLLSNVCKNATIDCHIADTRDLDPPLGDDGIHPIQEGYELLATRIWEIKLDNDIPI 205          
BLAST of EWM29990.1 vs. NCBI_GenBank
Match: gi|585108483|gb|EWM26439.1| (hypothetical protein Naga_100344g3 [Nannochloropsis gaditana])

HSP 1 Score: 170.244 bits (430), Expect = 1.982e-50
Identity = 80/148 (54.05%), Postives = 105/148 (70.95%), Query Frame = 0
Query:   76 WVKSVPQVYGDMRKKTAPAVPTTIVLNGGGNDVITVRDDCWAFNDKCRKQIDEAMDIAEKLLLCMHDDGVEHVIYLGFYYAFNMTEAVDYGMEGIKRVCEGAPIDCHVADARNLSIPTGWDGIHPLDEGYKRLSTRIWEVKEANNIPI 223
            WV S+P  Y  M K   P    TIV++GGGNDVI+V+DDC +FND+C++QI EA DI   LL  MH+D V+HV+ +G YY  N+ +AVD G + +  VC+ A IDCH+AD R+L  P G DGIHP+ EGY+ L+TRIWE+K  N+IPI
Sbjct:    6 WVPSIPAEYSIMSKNPPP---ITIVMDGGGNDVISVKDDCLSFNDRCQQQIKEATDILADLLERMHEDKVQHVLLMGPYYLENLNKAVDEGFKLLSNVCKNATIDCHIADTRDLDPPLGDDGIHPIQEGYELLATRIWEIKLDNDIPI 150          
BLAST of EWM29990.1 vs. NCBI_GenBank
Match: gi|1182764890|emb|SMF04632.1| (Lysophospholipase L1 [Pseudobacteriovorax antillogorgiicola])

HSP 1 Score: 115.546 bits (288), Expect = 3.393e-28
Identity = 68/196 (34.69%), Postives = 102/196 (52.04%), Query Frame = 0
Query:   27 MSSTVLVGDSIMAGRDGVWGIGAINKYLNQFSGQKLDNYALIGSSLHDGWVKSVPQVYGDMRKKTAPAVPTTIVLNGGGNDVITVRDDCWAFNDKCRKQIDEAMDIAEKLLLCMHDDGVEHVIYLGFYYAF----NMTEAVDYGMEGIKRVCEGAPIDCHVADARNLSIPTG---WDGIHPLDEGYKRLSTRIWEV 215
            +  T+++GDSI A        G I + L + SGQ++ +YA  G+ + D     V Q Y    +  A  +P T+++NGGGNDV+     C   N +C   I+ A+D    L+  M DDGVE ++YLG+YY       +  A+DY M  I ++C    + C V + R L    G    DGIHP   G ++++  IWEV
Sbjct:   40 LGDTIILGDSIFALN------GEIERRLERNSGQRITSYARNGAEMDD----VVQQYY----RARARGIPQTVIMNGGGNDVLGNITSCRFLNSRCVNAIEGAIDQGVDLIQLMEDDGVERIVYLGYYYTKFIGGGLDNAIDYAMARIPQICGATNLPCDVVETRRLMNGFGNRIIDGIHPTFRGSRKMADAIWEV 221          
BLAST of EWM29990.1 vs. NCBI_GenBank
Match: gi|1088945591|emb|SDW35142.1| (GDSL-like Lipase/Acylhydrolase [Marinobacter mobilis])

HSP 1 Score: 92.8189 bits (229), Expect = 2.369e-19
Identity = 70/219 (31.96%), Postives = 104/219 (47.49%), Query Frame = 0
Query:   17 MSTVPVLSTGMSSTVLVGDSIMAGRDGVWGIGAINKYLNQFSGQKLDNYALIGSSLHDGWVKSVPQVYGDMRKKTAPAVPTTIVLNGGGNDVITVR-----DDC---W----AFNDKCRKQIDEAMDIAEKLLLCMHDDGVEHVIYLGFYYAFN-------MTEAVDYGMEGIKRVCEGAPIDCHVADARNLSIPTG---WDGIHPLDEGYKRLSTRIW 213
            +S   V+       + +GDSI A        G +  +L Q +GQ    Y L G+ L  G V +       + +   PA+  T+V++GGGND++         DC   W      +  C+  I++       LL  MH DGV+HVIYLG+YY  N       M EAVDYG   + + C+ + ++C   D R+ +I  G    DGIHP   G ++L+  IW
Sbjct:   30 LSNPRVVDADNDQVITIGDSIFALS------GELQDFLEQDAGQTFRRYTLSGAELAGGAVATSIVDQYQIARSDNPAI-DTVVMDGGGNDILIPAIMFDPYDCKTQWYEFGQLSRSCKDLINDIYVDGVNLLNDMHADGVDHVIYLGYYYTKNGLFLLDSMEEAVDYGDTRLAQACQYSAVNCQFIDPRS-AINDGDIIADGIHPNTTGSRKLANLIW 240          
BLAST of EWM29990.1 vs. NCBI_GenBank
Match: gi|1097643629|emb|SFM36860.1| (GDSL-like Lipase/Acylhydrolase [Marinobacter zhejiangensis])

HSP 1 Score: 90.8929 bits (224), Expect = 1.637e-18
Identity = 68/204 (33.33%), Postives = 100/204 (49.02%), Query Frame = 0
Query:   31 VLVGDSIMAGRDGVWGIGAINKYLNQFSGQKLDNYALIGSSLHDGWVKSVPQVYGDMRKKTAPAVPTTIVLNGGGNDVIT---VRD--DC---W----AFNDKCRKQIDEAMDIAEKLLLCMHDDGVEHVIYLGFYYAFN-------MTEAVDYGMEGIKRVCEGAPIDCHVADARNLSIPTG--WDGIHPLDEGYKRLSTRIW 213
            V +GDSI A        G +  +L Q +GQ    Y L G+ L  G V +       + +   PA+  TIV++GGGND++    + D  DC   W      +  C+  I++       LL  MH DGV++VIYLG+YY  N       M EAVDYG   + + C  + ++C   D R+    +    DGIHP   G ++L++ IW
Sbjct:   57 VTIGDSIFALS------GELQDFLEQDAGQTFRRYTLSGAELAGGAVATSIVDQYQIARSDNPAI-DTIVMDGGGNDILIPAIMFDPYDCKTQWYEFGQLSSSCKNLINDIYVDGVNLLNDMHADGVDNVIYLGYYYTKNGLFLLDSMEEAVDYGDYRLAQACRYSAVNCQFVDPRSAINDSDIIADGIHPTTTGSRKLASLIW 253          
BLAST of EWM29990.1 vs. NCBI_GenBank
Match: gi|521076579|ref|WP_020407486.1| (SGNH/GDSL hydrolase family protein [Hahella ganghwensis])

HSP 1 Score: 86.2705 bits (212), Expect = 8.768e-17
Identity = 68/206 (33.01%), Postives = 100/206 (48.54%), Query Frame = 0
Query:   31 VLVGDSIMAGRDGVWGIGAINKYLNQFSGQKLDNYALIGSSLHDGWVK-SVPQVYGDMRKKTAPAVPTTIVLNGGGNDVIT---VRD--DC---W----AFNDKCRKQIDEAMDIAEKLLLCMHDDGVEHVIYLGFYYAFN-------MTEAVDYGMEGIKRVCEGAPIDCHVADARNLSIPTG---WDGIHPLDEGYKRLSTRIW 213
            V +GDSI A        G +  +L  ++G+    Y L G+ L  G +  S+   Y   R   +     TIV++GGGND++    + D  DC   W      +  C+  I++       LL  MH DGV +VIYLG+Y+  N       M EAVDYG   + + C  + ++C   D R+ SI  G   +DGIHP   G K+L+  +W
Sbjct:   57 VTIGDSIFALS------GDLQDFLEDYAGETFRRYTLSGAELTGGVIATSIADQYEIARSDNSDI--ETIVMDGGGNDILIPAIMLDPYDCKTQWYEFGKLSSTCKNYINDIYIDGVNLLNDMHADGVSNVIYLGYYHTKNGLFLLDSMEEAVDYGDAKLAQACSYSAVNCEFVDPRS-SINDGDIIFDGIHPNTGGSKKLADLVW 253          
BLAST of EWM29990.1 vs. NCBI_GenBank
Match: gi|1149199120|ref|WP_077751379.1| (hypothetical protein [Shewanella psychrophila] >gi|1148951612|gb|AQS36039.1| hypothetical protein Sps_00847 [Shewanella psychrophila])

HSP 1 Score: 81.2629 bits (199), Expect = 4.330e-15
Identity = 60/202 (29.70%), Postives = 97/202 (48.02%), Query Frame = 0
Query:   35 DSIMAGRDGVWGI-GAINKYLNQFSGQKLDNYALIGSSLHDG-WVKSVPQVYGDMRKKTAPAVPTTIVLNGGGNDVI--TVRDDCWA---------FNDKCRKQIDEAMDIAEKLLLCMHDDGVEHVIYLGFYYAF-NMT---EAVDYGMEGIKRVCEGAPIDCHVADARNLSIPTG--WDGIHPLDEGYKRLSTRIWEVKE 217
            + I+   D ++ + G I  +L Q +G+   +Y   G+ L  G    SV   Y D   K+  +   TIV+NGGGND++   +  D +            + C   ID+    A  LL  M  + V +V+YLG+Y+   N+T   +AVDYG   +   C    +DC   D R++ +P+    D IHP   G ++++  IW + E
Sbjct:   44 NEIITLGDSIYDLSGEIQLFLEQDAGETFRDYTQSGAELAGGSLATSVITQYAD--AKSDNSTIETIVMNGGGNDILIPAMLFDPYRCKTKWYRPNLTNSCISLIDDVYVDAVTLLNQMETESVSNVLYLGYYHTTGNLTSLIKAVDYGNTRLSEACSNTTVDCSFIDPRSVIVPSDVISDNIHPTTSGSQKMAALIWPLLE 243          
BLAST of EWM29990.1 vs. NCBI_GenBank
Match: gi|1000080513|gb|KXJ48903.1| (hypothetical protein AXW11_00835 [Marinobacter sp. Hex_13] >gi|1126512253|gb|OLF83291.1| hypothetical protein AWH63_04935 [Marinobacter sp. C18])

HSP 1 Score: 79.337 bits (194), Expect = 2.502e-14
Identity = 62/219 (28.31%), Postives = 101/219 (46.12%), Query Frame = 0
Query:   17 MSTVPVLSTGMSSTVLVGDSIMAGRDGVWGIGAINKYLNQFSGQKLDNYALIGSSLHDGWVK-SVPQVYGDMRKKTAPAVPTTIVLNGGGNDVI---------TVRDDCWAF---NDKCRKQIDEAMDIAEKLLLCMHDDGVEHVIYLGFYYAFN-------MTEAVDYGMEGIKRVCEGAPIDCHVADARNLSIPTG--WDGIHPLDEGYKRLSTRIW 213
            +S   V        + +GDSI A        G I   L   +G+    Y + G+ L  G++  SV + +   ++   P +  T+V NGGGND++           +   + F   + KC+  ID+        L  + D GVE+ + +G+YY  N       M +AVDYG + + R CE + +DC   D R +   +   +DGIHP D G ++++  IW
Sbjct:   20 LSNPQVSDADNDQVIFLGDSIFALS------GKIQDELEAKAGETFRRYTVSGAELTGGFLAPSVVEQFATAQEDN-PDI-RTMVGNGGGNDILIPAIALDPYNCKTQWYQFGRLSSKCKDLIDDLYVDGVNYLNELSDAGVENGVLVGYYYTKNGLFRLKSMKQAVDYGNKILARACEYSTLDCTFVDPRQVVTESDIIFDGIHPADSGSQKIAELIW 230          
The following BLAST results are available for this feature:
BLAST of EWM29990.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553182994|ref|XP_005853822.1|1.049e-165100.00hypothetical protein NGA_0470400 [Nannochloropsis ... [more]
gi|585104073|gb|EWM23185.1|1.969e-6746.58lipolytic protein g-d-s-l family [Nannochloropsis ... [more]
gi|553183672|ref|XP_005853939.1|3.110e-6048.06lipolytic protein g-d-s-l family [Nannochloropsis ... [more]
gi|585108483|gb|EWM26439.1|1.982e-5054.05hypothetical protein Naga_100344g3 [Nannochloropsi... [more]
gi|1182764890|emb|SMF04632.1|3.393e-2834.69Lysophospholipase L1 [Pseudobacteriovorax antillog... [more]
gi|1088945591|emb|SDW35142.1|2.369e-1931.96GDSL-like Lipase/Acylhydrolase [Marinobacter mobil... [more]
gi|1097643629|emb|SFM36860.1|1.637e-1833.33GDSL-like Lipase/Acylhydrolase [Marinobacter zheji... [more]
gi|521076579|ref|WP_020407486.1|8.768e-1733.01SGNH/GDSL hydrolase family protein [Hahella ganghw... [more]
gi|1149199120|ref|WP_077751379.1|4.330e-1529.70hypothetical protein [Shewanella psychrophila] >gi... [more]
gi|1000080513|gb|KXJ48903.1|2.502e-1428.31hypothetical protein AXW11_00835 [Marinobacter sp.... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna684rna684Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications