EWM23845.1, cds6836 (CDS) Nannochloropsis gaditana

Overview
NameEWM23845.1
Unique Namecds6836
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:642530..642541 -
Alignment locationCM002469.1:642312..642371 -
Alignment locationCM002469.1:641780..642224 -
Alignment locationCM002469.1:641619..641705 -
Alignment locationCM002469.1:640811..641343 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23845.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100273g2.3661.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:642530..642541 -
CM002469.1supercontigCM002469.1:642312..642371 -
CM002469.1supercontigCM002469.1:641780..642224 -
CM002469.1supercontigCM002469.1:641619..641705 -
CM002469.1supercontigCM002469.1:640811..641343 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM23845.1 vs. NCBI_GenBank
Match: gi|585105113|gb|EWM23845.1| (hypothetical protein Naga_100273g2 [Nannochloropsis gaditana])

HSP 1 Score: 764.607 bits (1973), Expect = 0.000e+0
Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 0
Query:    1 MHKRVFLFSRDDGLLVFILKLRARASNNCLPRSTRRTRRHAPFCFFPPLRWARGWTPSSLSAVTAALSSPSSSFYPSPLRVHCQAYHASQSANELSNILPISSSAVPERKLDQALVPWLEKHTSLPSFSSATPLLPPTLLDVRPSSIPNAGRGLWLKPYQTVAKGDILTLYPGLIYELPHDLAALMPSEDAFAFAPPDFMIGNAFLLRVSVSSRDFLCDGRPFGLSAHMFRAISRRQHERLGLQVNDAWLEGEGEGGKENGKGTAKEKGAEGGGKRSSLAWGHLINDPQGSGGRPNVAFRTIRVTVAASAAPAAPASSFPPSFPPSLLPSLPTLSASGNNARERVVIAVVAVEAMEGGAEGKELFVQYSQEPTHLGYI 378
            MHKRVFLFSRDDGLLVFILKLRARASNNCLPRSTRRTRRHAPFCFFPPLRWARGWTPSSLSAVTAALSSPSSSFYPSPLRVHCQAYHASQSANELSNILPISSSAVPERKLDQALVPWLEKHTSLPSFSSATPLLPPTLLDVRPSSIPNAGRGLWLKPYQTVAKGDILTLYPGLIYELPHDLAALMPSEDAFAFAPPDFMIGNAFLLRVSVSSRDFLCDGRPFGLSAHMFRAISRRQHERLGLQVNDAWLEGEGEGGKENGKGTAKEKGAEGGGKRSSLAWGHLINDPQGSGGRPNVAFRTIRVTVAASAAPAAPASSFPPSFPPSLLPSLPTLSASGNNARERVVIAVVAVEAMEGGAEGKELFVQYSQEPTHLGYI
Sbjct:    1 MHKRVFLFSRDDGLLVFILKLRARASNNCLPRSTRRTRRHAPFCFFPPLRWARGWTPSSLSAVTAALSSPSSSFYPSPLRVHCQAYHASQSANELSNILPISSSAVPERKLDQALVPWLEKHTSLPSFSSATPLLPPTLLDVRPSSIPNAGRGLWLKPYQTVAKGDILTLYPGLIYELPHDLAALMPSEDAFAFAPPDFMIGNAFLLRVSVSSRDFLCDGRPFGLSAHMFRAISRRQHERLGLQVNDAWLEGEGEGGKENGKGTAKEKGAEGGGKRSSLAWGHLINDPQGSGGRPNVAFRTIRVTVAASAAPAAPASSFPPSFPPSLLPSLPTLSASGNNARERVVIAVVAVEAMEGGAEGKELFVQYSQEPTHLGYI 378          
BLAST of EWM23845.1 vs. NCBI_GenBank
Match: gi|553187395|ref|XP_005854601.1| (hypothetical protein NGA_0209800, partial [Nannochloropsis gaditana CCMP526] >gi|422294453|gb|EKU21753.1| hypothetical protein NGA_0209800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 692.575 bits (1786), Expect = 0.000e+0
Identity = 345/355 (97.18%), Postives = 349/355 (98.31%), Query Frame = 0
Query:   24 RASNNCLPRSTRRTRRHAPFCFFPPLRWARGWTPSSLSAVTAALSSPSSSFYPSPLRVHCQAYHASQSANELSNILPISSSAVPERKLDQALVPWLEKHTSLPSFSSATPLLPPTLLDVRPSSIPNAGRGLWLKPYQTVAKGDILTLYPGLIYELPHDLAALMPSEDAFAFAPPDFMIGNAFLLRVSVSSRDFLCDGRPFGLSAHMFRAISRRQHERLGLQVNDAWLEGEGEGGKENGKGTAKEKGAEGGGKRSSLAWGHLINDPQGSGGRPNVAFRTIRVTVAASAAPAAPASSFPPSFPPSLLPSLPTLSASGNNARERVVIAVVAVEAMEGGAEGKELFVQYSQEPTHLGYI 378
            +ASNNCLPRSTRRTRRHAPF FFPPLR ARGWTPSSLSAVTAALSSPSSSFYPSPL VHCQAYHASQSANELSNILPISSSAVPERKLDQALVPWLEKHTSLPSFSSATPL PPTLLDVRPSSIPNAGRGLWLKPYQ VAKGDILTLYPGLIYELPHDLAALMPSEDAFAFAPPDFMIGNAFLLRVSVSSRDFLCDGRPFGLSAHMFRAISRRQHERLGLQVNDAWLEGEGEGGKENG GTAKE+GAEGGGKRSSLAWGHLINDPQGSGGRPNVAFRTIRVTVAASAAPAAPASSFPPSFPPSL+PSLPTLSASGNNARERVVIAVVAVEAMEGGAEGKELFVQYSQ+PTHLGYI
Sbjct:    1 QASNNCLPRSTRRTRRHAPFWFFPPLRRARGWTPSSLSAVTAALSSPSSSFYPSPLCVHCQAYHASQSANELSNILPISSSAVPERKLDQALVPWLEKHTSLPSFSSATPLSPPTLLDVRPSSIPNAGRGLWLKPYQNVAKGDILTLYPGLIYELPHDLAALMPSEDAFAFAPPDFMIGNAFLLRVSVSSRDFLCDGRPFGLSAHMFRAISRRQHERLGLQVNDAWLEGEGEGGKENGGGTAKERGAEGGGKRSSLAWGHLINDPQGSGGRPNVAFRTIRVTVAASAAPAAPASSFPPSFPPSLVPSLPTLSASGNNARERVVIAVVAVEAMEGGAEGKELFVQYSQDPTHLGYI 355          
BLAST of EWM23845.1 vs. NCBI_GenBank
Match: gi|585102573|gb|EWM22152.1| (hypothetical protein Naga_100064g16 [Nannochloropsis gaditana])

HSP 1 Score: 92.4337 bits (228), Expect = 5.713e-17
Identity = 83/278 (29.86%), Postives = 125/278 (44.96%), Query Frame = 0
Query:  140 LDVRPSSIPNAGRGLWLKPYQTVAKGDILTLYPGLIYELPHDLAALMPSED-AFAFAPPDFMIGNAFLLRVS--VSSRDFLCDGRPFGLSAHMFRAISRRQHERLGLQVNDAWLE--------------------GEGEGGKENGKGTAKEKG----AEGGGK-------------RSSLAWGHLINDPQGSGGRPNVAFRTIRVTVAASAAPAAPASSFPPSFPPSLLPSLPTLSASGNNARERVVIAVVAVEAME--GGAEGKELFVQYSQEPTHL 375
            L+ RPS++P AG GL+L   + V  G+++T +PGL+Y +P+DL A MP ++ +F+  PP F++ N +LLR    V+++  L DG P G+SA  F A ++R   R     N  WLE                    G GEG K+ G+     +G     EGG +              + L  GHL+NDP  S  + N  F    +               P   PP LL  +P L  +         + V A + +E   GA   E++V Y+   T +
Sbjct:  190 LERRPSTLPGAGMGLFLVQGR-VHAGEVITCHPGLVYRIPYDLEACMPMDEVSFSPCPPPFLVKNDYLLRFYHPVTNQHLLLDGCPQGISALNFIAANQR---RGRPWANMEWLESSPFGCRRRGPEREEGLVEGGWGEGRKDRGRPGGPMQGTSCLGEGGEEVLLPREMDSSKYFTAKLGLGHLVNDPH-SPEKYNAEFHLCEL---------------PSDLPPHLLRFIPNLHFAQGIGSRHFCVLVTASKNLEVPQGAPPVEIYVPYASSFTEV 447          
BLAST of EWM23845.1 vs. NCBI_GenBank
Match: gi|585102572|gb|EWM22151.1| (hypothetical protein Naga_100064g16 [Nannochloropsis gaditana])

HSP 1 Score: 79.337 bits (194), Expect = 1.258e-12
Identity = 57/157 (36.31%), Postives = 87/157 (55.41%), Query Frame = 0
Query:  140 LDVRPSSIPNAGRGLWLKPYQTVAKGDILTLYPGLIYELPHDLAALMPSED-AFAFAPPDFMIGNAFLLRVS--VSSRDFLCDGRPFGLSAHMFRAISRRQHERLGLQVNDAWLEGEGEGGKENGKGTAKEKGAEGGGKRSSLAWGHLINDPQGSGG 293
            L+ RPS++P AG GL+L   + V  G+++T +PGL+Y +P+DL A MP ++ +F+  PP F++ N +LLR    V+++  L DG P G+SA  F A ++R+        N  WLE    G +   +G  +E+G   GG      WG    D    GG
Sbjct:  190 LERRPSTLPGAGMGLFLVQGR-VHAGEVITCHPGLVYRIPYDLEACMPMDEVSFSPCPPPFLVKNDYLLRFYHPVTNQHLLLDGCPQGISALNFIAANQRRGRPW---ANMEWLESSPFGCRR--RGPEREEGLVEGG------WGEGRKDRGRPGG 334          
BLAST of EWM23845.1 vs. NCBI_GenBank
Match: gi|552845072|ref|XP_005851253.1| (hypothetical protein CHLNCDRAFT_49994 [Chlorella variabilis] >gi|307110916|gb|EFN59151.1| hypothetical protein CHLNCDRAFT_49994 [Chlorella variabilis])

HSP 1 Score: 72.4034 bits (176), Expect = 4.725e-10
Identity = 77/246 (31.30%), Postives = 113/246 (45.93%), Query Frame = 0
Query:  140 LDVRPSSI--PNAGRGLWLKPYQTVAKGDILTLYPGLIYELPHDLAALMPS--EDAFAFAPPDFMIGNAFLLRVSVSSRDFLCDGRPFGLSAHMFRAISRRQH--ERLGLQVNDAWLEGEGEGGKENGKGTAKEKGAEGGGKRSSLAWGHLINDPQGSGGRPNVAFRTIRVTVAASAAPAAPASSFPPSFPPSLLPSLPTLSASGNNARERVVIAVVAVEAMEGGAEGK--ELFVQYSQEPTHLGY 377
            L  RPS I  P+AG G++L      A G ILTLYPGL++++   +  L  S  +DA A APP + + N +LL++   +   L DG+P GLSA  F+A +      +     VN +WL     GG++  +   +  G E   ++++L  GH++N   G     N AF                    P + PPSL   +P+LS  G    E   + +V      G   G   EL V Y   P  LG+
Sbjct:  608 LQRRPSGIQHPDAGDGVFLTAGGCPA-GGILTLYPGLVHDMGDFVLLLGVSAPDDACAPAPPAWTLDNHYLLQLRCLNAACLVDGQPGGLSAQRFQAAAASWAAGQPEAALVNASWL---ALGGQQRAELDGR-LGCEALLRQAAL--GHMLN--HGPAAAANAAFDMC---------------PLPAALPPSLQRYVPSLSVGGRGEEEVRWVPLVTARTALGATAGSPVELLVDYGINPLSLGF 829          
The following BLAST results are available for this feature:
BLAST of EWM23845.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585105113|gb|EWM23845.1|0.000e+0100.00hypothetical protein Naga_100273g2 [Nannochloropsi... [more]
gi|553187395|ref|XP_005854601.1|0.000e+097.18hypothetical protein NGA_0209800, partial [Nannoch... [more]
gi|585102573|gb|EWM22152.1|5.713e-1729.86hypothetical protein Naga_100064g16 [Nannochlorops... [more]
gi|585102572|gb|EWM22151.1|1.258e-1236.31hypothetical protein Naga_100064g16 [Nannochlorops... [more]
gi|552845072|ref|XP_005851253.1|4.725e-1031.30hypothetical protein CHLNCDRAFT_49994 [Chlorella v... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6852rna6852Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications