EWM23836.1, cds6829 (CDS) Nannochloropsis gaditana

Overview
NameEWM23836.1
Unique Namecds6829
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:627637..627805 -
Alignment locationCM002469.1:627161..627339 -
Alignment locationCM002469.1:626709..626873 -
Alignment locationCM002469.1:626410..626532 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23836.1
Productnucleoside diphosphate kinase
Orig transcript idgnl|cribi|Naga_100273g9.3652.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:627637..627805 -
CM002469.1supercontigCM002469.1:627161..627339 -
CM002469.1supercontigCM002469.1:626709..626873 -
CM002469.1supercontigCM002469.1:626410..626532 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006183GTP biosynthetic process
GO:0006165nucleoside diphosphate phosphorylation
GO:0006228UTP biosynthetic process
GO:0006241CTP biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0000166nucleotide binding
GO:0004550nucleoside diphosphate kinase activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR023005Nucleoside_diP_kinase_AS
IPR001564Nucleoside_diP_kinase
Homology
BLAST of EWM23836.1 vs. NCBI_GenBank
Match: gi|553187401|ref|XP_005854603.1| (nucleoside-diphosphate kinase [Nannochloropsis gaditana CCMP526] >gi|422294455|gb|EKU21755.1| nucleoside-diphosphate kinase [Nannochloropsis gaditana CCMP526] >gi|585105104|gb|EWM23836.1| nucleoside diphosphate kinase [Nannochloropsis gaditana])

HSP 1 Score: 437.187 bits (1123), Expect = 3.405e-155
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
Query:    1 MEMLRLVSLCAIVSTALSFVATGPPSRHTTAAPTARPTFAAWGTRVVPSRSMSLHGSRGLCMAMERTYIMAKPDAVQRGLVSDIIGRFEKKGYKLVALKLVKPARSLLEEHYDSLKDKAFFPSLMDYMTSGPVVAMVWEGKNVVATGRTMLGATNPLESAPGTIRGDFSIEVGRNICHGSDSVENAEREIKLWFGEGTIDWSSHSQGWIYE 211
            MEMLRLVSLCAIVSTALSFVATGPPSRHTTAAPTARPTFAAWGTRVVPSRSMSLHGSRGLCMAMERTYIMAKPDAVQRGLVSDIIGRFEKKGYKLVALKLVKPARSLLEEHYDSLKDKAFFPSLMDYMTSGPVVAMVWEGKNVVATGRTMLGATNPLESAPGTIRGDFSIEVGRNICHGSDSVENAEREIKLWFGEGTIDWSSHSQGWIYE
Sbjct:    1 MEMLRLVSLCAIVSTALSFVATGPPSRHTTAAPTARPTFAAWGTRVVPSRSMSLHGSRGLCMAMERTYIMAKPDAVQRGLVSDIIGRFEKKGYKLVALKLVKPARSLLEEHYDSLKDKAFFPSLMDYMTSGPVVAMVWEGKNVVATGRTMLGATNPLESAPGTIRGDFSIEVGRNICHGSDSVENAEREIKLWFGEGTIDWSSHSQGWIYE 211          
BLAST of EWM23836.1 vs. NCBI_GenBank
Match: gi|873223122|emb|CEM29630.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 241.506 bits (615), Expect = 8.283e-79
Identity = 110/151 (72.85%), Postives = 129/151 (85.43%), Query Frame = 0
Query:   62 MAMERTYIMAKPDAVQRGLVSDIIGRFEKKGYKLVALKLVKPARSLLEEHYDSLKDKAFFPSLMDYMTSGPVVAMVWEGKNVVATGRTMLGATNPLESAPGTIRGDFSIEVGRNICHGSDSVENAEREIKLWFGEGTI-DWSSHSQGWIYE 211
            MAMERTYIM KPD VQR +V DI+GRFE KGY+LV +K+V+P RSLLE+HYDSLK+K FFP LMDYM+SGPV+AMVW GK+VVATGR MLGATNPL+SAPGTIRGD++I+VGRNI HGSDSVE+AEREI LWF +  +  W  HS  W+YE
Sbjct:    1 MAMERTYIMVKPDGVQRKVVGDIVGRFESKGYQLVGMKMVQPDRSLLEDHYDSLKEKPFFPKLMDYMSSGPVIAMVWSGKDVVATGRKMLGATNPLDSAPGTIRGDYAIDVGRNIIHGSDSVESAEREIGLWFTDDELMSWQDHSHDWVYE 151          
BLAST of EWM23836.1 vs. NCBI_GenBank
Match: gi|1210531630|dbj|GAX09986.1| (nucleoside-diphosphate kinase [Fistulifera solaris])

HSP 1 Score: 236.498 bits (602), Expect = 2.619e-76
Identity = 111/153 (72.55%), Postives = 121/153 (79.08%), Query Frame = 0
Query:   60 LCMAMERTYIMAKPDAVQRGLVSDIIGRFEKKGYKLVALKLVKPARSLLEEHYDSLKDKAFFPSLMDYMTSGPVVAMVWEGKNVVATGRTMLGATNPLESAPGTIRGDFSIEVGRNICHGSDSVENAEREIKLWFGEGTI-DWSSHSQGWIYE 211
            L MAMERTYIM KPD VQRG+V +II RFE KGYKLVA+K     + LLE+HY  L  K FFP L DYM SGPVV+MVWEGK  V+TGR MLGATNPLESAPGTIRGDF IEVGRNICHGSDSVENA +EI LWF E  + DW SHSQ W+YE
Sbjct:   34 LSMAMERTYIMIKPDGVQRGIVGNIISRFETKGYKLVAMKTRMATKELLEKHYADLTSKPFFPKLRDYMLSGPVVSMVWEGKEAVSTGRKMLGATNPLESAPGTIRGDFCIEVGRNICHGSDSVENANKEIALWFDESEVLDWESHSQSWLYE 186          
BLAST of EWM23836.1 vs. NCBI_GenBank
Match: gi|1210526868|dbj|GAX14516.1| (nucleoside-diphosphate kinase [Fistulifera solaris])

HSP 1 Score: 235.728 bits (600), Expect = 5.332e-76
Identity = 110/153 (71.90%), Postives = 121/153 (79.08%), Query Frame = 0
Query:   60 LCMAMERTYIMAKPDAVQRGLVSDIIGRFEKKGYKLVALKLVKPARSLLEEHYDSLKDKAFFPSLMDYMTSGPVVAMVWEGKNVVATGRTMLGATNPLESAPGTIRGDFSIEVGRNICHGSDSVENAEREIKLWFGEGTI-DWSSHSQGWIYE 211
            L MAMERTYIM KPD VQRG+V +I+ RFE KGYKLVA+K     + LLE+HY  L  K FFP L DYM SGPVV+MVWEGK  V+TGR MLGATNPLESAPGTIRGDF IEVGRNICHGSDSVENA +EI LWF E  + DW SHSQ W+YE
Sbjct:   34 LSMAMERTYIMIKPDGVQRGIVGNIVSRFETKGYKLVAMKTRMATKELLEKHYADLTSKPFFPKLRDYMLSGPVVSMVWEGKEAVSTGRKMLGATNPLESAPGTIRGDFCIEVGRNICHGSDSVENANKEIALWFDESEVLDWESHSQSWLYE 186          
BLAST of EWM23836.1 vs. NCBI_GenBank
Match: gi|219109896|ref|XP_002176701.1| (nucleoside diphosphate kinase 1 [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411236|gb|EEC51164.1| nucleoside diphosphate kinase 1 [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 229.18 bits (583), Expect = 6.112e-74
Identity = 108/150 (72.00%), Postives = 119/150 (79.33%), Query Frame = 0
Query:   63 AMERTYIMAKPDAVQRGLVSDIIGRFEKKGYKLVALKLVKPARSLLEEHYDSLKDKAFFPSLMDYMTSGPVVAMVWEGKNVVATGRTMLGATNPLESAPGTIRGDFSIEVGRNICHGSDSVENAEREIKLWFGEGTI-DWSSHSQGWIYE 211
            A ERTYIM KPD +QRG+V +I+ RFE KGYKLVA+K  +    LLE HY  L DK FFP L +YM SGPVV+MVWEGK  V+TGR MLGATNPLESAPGTIRGDF IEVGRNICHGSDSVENAE+EI LWF E  I DW SHS+ WIYE
Sbjct:    3 ASERTYIMIKPDGIQRGIVGNIVNRFETKGYKLVAMKTKQATSELLETHYKDLVDKPFFPKLKEYMMSGPVVSMVWEGKEAVSTGRKMLGATNPLESAPGTIRGDFCIEVGRNICHGSDSVENAEKEIALWFEEDEILDWESHSKDWIYE 152          
BLAST of EWM23836.1 vs. NCBI_GenBank
Match: gi|914969199|ref|XP_013240990.1| (NDK-domain-containing protein [Tilletiaria anomala UBC 951] >gi|639561581|gb|KDN39316.1| NDK-domain-containing protein [Tilletiaria anomala UBC 951])

HSP 1 Score: 226.483 bits (576), Expect = 1.332e-72
Identity = 106/152 (69.74%), Postives = 122/152 (80.26%), Query Frame = 0
Query:   62 MAMERTYIMAKPDAVQRGLVSDIIGRFEKKGYKLVALKLVKPARSLLEEHYDSLKDKAFFPSLMDYMTSGPVVAMVWEGKNVVATGRTMLGATNPLESAPGTIRGDFSIEVGRNICHGSDSVENAEREIKLWFG--EGTIDWSSHSQGWIYE 211
            MA E+TYIM KPD VQR LV +IIGRFEK+GYKLVA+KLV     LLE+HY  LK K+FFP L+ YM SGPVVAMVWEGK+VV  GR +LGATNPL SAPGTIRGDF+I+VGRNICHGSDSVENA++EI LWFG  + TI ++     WIYE
Sbjct:    1 MATEQTYIMIKPDGVQRALVGEIIGRFEKRGYKLVAMKLVHAGTDLLEQHYGDLKGKSFFPGLVKYMASGPVVAMVWEGKDVVKQGRVLLGATNPLASAPGTIRGDFAIDVGRNICHGSDSVENAKKEIALWFGAQDATIQYTRAQDAWIYE 152          
BLAST of EWM23836.1 vs. NCBI_GenBank
Match: gi|1072236526|gb|OEU21254.1| (putative nucleoside-diphosphate kinase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 226.483 bits (576), Expect = 2.045e-72
Identity = 107/159 (67.30%), Postives = 122/159 (76.73%), Query Frame = 0
Query:   57 SRGLCMAM---ERTYIMAKPDAVQRGLVSDIIGRFEKKGYKLVALKLVKPARSLLEEHYDSLKDKAFFPSLMDYMTSGPVVAMVWEGKNVVATGRTMLGATNPLESAPGTIRGDFSIEVGRNICHGSDSVENAEREIKLWFGEGTI-DWSSHSQGWIYE 211
            + G  M M   ERTYIM KPD VQRG+V +II RFE KGYKL A+K  + ++ LLE HY  L +K FFP + DYM SGPVV MVWEGK  V+TGR MLGATNPLES PGTIRGD+ IEVGRNICHGSDSVENAE+EI LWF EG + DW+ HS+ WIYE
Sbjct:   17 AHGFSMTMNSAERTYIMIKPDGVQRGIVGNIISRFETKGYKLSAMKTKEASKELLETHYSDLVEKPFFPKMRDYMMSGPVVCMVWEGKEAVSTGRKMLGATNPLESNPGTIRGDYCIEVGRNICHGSDSVENAEKEIALWFEEGEVMDWTCHSKDWIYE 175          
BLAST of EWM23836.1 vs. NCBI_GenBank
Match: gi|1022842798|ref|XP_016276682.1| (nucleoside-diphosphate kinase [Rhodotorula toruloides NP11] >gi|472588067|gb|EMS25563.1| nucleoside-diphosphate kinase [Rhodotorula toruloides NP11] >gi|647401430|emb|CDR47658.1| RHTO0S15e00298g1_1 [Rhodotorula toruloides])

HSP 1 Score: 225.328 bits (573), Expect = 2.092e-72
Identity = 102/148 (68.92%), Postives = 122/148 (82.43%), Query Frame = 0
Query:   64 MERTYIMAKPDAVQRGLVSDIIGRFEKKGYKLVALKLVKPARSLLEEHYDSLKDKAFFPSLMDYMTSGPVVAMVWEGKNVVATGRTMLGATNPLESAPGTIRGDFSIEVGRNICHGSDSVENAEREIKLWFGEGTIDWSSHSQGWIYE 211
            ME+TYIM KPD VQRGLV +II RFEK+GYKLVA+KL  P+   LE+HY+ LK+K FF  L+ YM SGPVVAMVWEGK+ V TGRT+LGATNPL SAPGTIRGDF+I+VGRN+CHGSD+VE+A++EI LWF EG   W+S  Q W+YE
Sbjct:    1 MEQTYIMIKPDGVQRGLVGEIISRFEKRGYKLVAMKLASPSVEHLEKHYEDLKEKPFFKGLVSYMASGPVVAMVWEGKDAVKTGRTILGATNPLASAPGTIRGDFAIDVGRNVCHGSDAVESAKKEIALWFPEGLAQWTSAQQTWVYE 148          
BLAST of EWM23836.1 vs. NCBI_GenBank
Match: gi|224002899|ref|XP_002291121.1| (nucleoside diphosphate kinase [Thalassiosira pseudonana CCMP1335] >gi|220972897|gb|EED91228.1| nucleoside diphosphate kinase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 224.942 bits (572), Expect = 3.175e-72
Identity = 107/150 (71.33%), Postives = 118/150 (78.67%), Query Frame = 0
Query:   63 AMERTYIMAKPDAVQRGLVSDIIGRFEKKGYKLVALKLVKPARSLLEEHYDSLKDKAFFPSLMDYMTSGPVVAMVWEGKNVVATGRTMLGATNPLESAPGTIRGDFSIEVGRNICHGSDSVENAEREIKLWFGEGT-IDWSSHSQGWIYE 211
            A ERTYIM KPD VQRG+V +II RFE KGYKLVALK  +  + LL+ HY  L +K FFP L DYM SGPVV+M+WEGK  VATGR MLGATNPL S PGTIRGDF IEVGRNICHGSDSVENAE+EI LWF E   +DW SHS+ WIYE
Sbjct:    3 ASERTYIMIKPDGVQRGIVGNIISRFETKGYKLVALKTKQATKELLDTHYCDLVEKPFFPKLRDYMMSGPVVSMIWEGKEAVATGRKMLGATNPLASEPGTIRGDFCIEVGRNICHGSDSVENAEKEIALWFEESELLDWESHSKDWIYE 152          
BLAST of EWM23836.1 vs. NCBI_GenBank
Match: gi|754373315|gb|KIP06002.1| (hypothetical protein PHLGIDRAFT_107499 [Phlebiopsis gigantea 11061_1 CR5-6])

HSP 1 Score: 223.016 bits (567), Expect = 1.930e-71
Identity = 101/147 (68.71%), Postives = 122/147 (82.99%), Query Frame = 0
Query:   65 ERTYIMAKPDAVQRGLVSDIIGRFEKKGYKLVALKLVKPARSLLEEHYDSLKDKAFFPSLMDYMTSGPVVAMVWEGKNVVATGRTMLGATNPLESAPGTIRGDFSIEVGRNICHGSDSVENAEREIKLWFGEGTIDWSSHSQGWIYE 211
            ERTYIM KPD VQRGLV +IIGRFE++G+KL+ALKLV  +   LE+HY  LK KAFFP L+ YM SGPVV MVWEG + V TGR+MLGATNPL S+PGTIRGDF++ VGRNICHGSDSVENAE+EI+LWF EGT+ +++ +  WI+E
Sbjct:    5 ERTYIMVKPDGVQRGLVGNIIGRFEQRGFKLIALKLVHASPEHLEKHYADLKGKAFFPGLIKYMASGPVVGMVWEGLDAVKTGRSMLGATNPLASSPGTIRGDFALAVGRNICHGSDSVENAEKEIQLWFPEGTVQYTNDNAKWIFE 151          
The following BLAST results are available for this feature:
BLAST of EWM23836.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553187401|ref|XP_005854603.1|3.405e-155100.00nucleoside-diphosphate kinase [Nannochloropsis gad... [more]
gi|873223122|emb|CEM29630.1|8.283e-7972.85unnamed protein product [Vitrella brassicaformis C... [more]
gi|1210531630|dbj|GAX09986.1|2.619e-7672.55nucleoside-diphosphate kinase [Fistulifera solaris... [more]
gi|1210526868|dbj|GAX14516.1|5.332e-7671.90nucleoside-diphosphate kinase [Fistulifera solaris... [more]
gi|219109896|ref|XP_002176701.1|6.112e-7472.00nucleoside diphosphate kinase 1 [Phaeodactylum tri... [more]
gi|914969199|ref|XP_013240990.1|1.332e-7269.74NDK-domain-containing protein [Tilletiaria anomala... [more]
gi|1072236526|gb|OEU21254.1|2.045e-7267.30putative nucleoside-diphosphate kinase [Fragilario... [more]
gi|1022842798|ref|XP_016276682.1|2.092e-7268.92nucleoside-diphosphate kinase [Rhodotorula toruloi... [more]
gi|224002899|ref|XP_002291121.1|3.175e-7271.33nucleoside diphosphate kinase [Thalassiosira pseud... [more]
gi|754373315|gb|KIP06002.1|1.930e-7168.71hypothetical protein PHLGIDRAFT_107499 [Phlebiopsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6845rna6845Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications