EWM23852.1, cds6820 (CDS) Nannochloropsis gaditana

Overview
NameEWM23852.1
Unique Namecds6820
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:611543..611548 +
Alignment locationCM002469.1:611620..611758 +
Alignment locationCM002469.1:612019..612041 +
Alignment locationCM002469.1:612246..612281 +
Alignment locationCM002469.1:612693..613058 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23852.1
Productef-1 guanine nucleotide exchange domain-containing
Orig transcript idgnl|cribi|Naga_100464g4.7486.mrna
GeneEEF1Bbeta
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:611543..611548 +
CM002469.1supercontigCM002469.1:611620..611758 +
CM002469.1supercontigCM002469.1:612019..612041 +
CM002469.1supercontigCM002469.1:612246..612281 +
CM002469.1supercontigCM002469.1:612693..613058 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0003746translation elongation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005853eukaryotic translation elongation factor 1 complex
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
Vocabulary: INTERPRO
TermDefinition
IPR001326Transl_elong_EF1B_B/D_CS
IPR014717Transl_elong_EF1B/ribosomal_S6
IPR014038Transl_elong_fac_EF1B_bsu/dsu
Homology
BLAST of EWM23852.1 vs. NCBI_GenBank
Match: gi|585105124|gb|EWM23852.1| (ef-1 guanine nucleotide exchange domain-containing [Nannochloropsis gaditana])

HSP 1 Score: 383.259 bits (983), Expect = 1.095e-134
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query:    1 MHTKTLTCSALQVSLMTYAMQYDELSVALGYALFGTAGAPAGKAAPAAKSTKKPAAEDDDMDLFGDDEDETPKATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189
            MHTKTLTCSALQVSLMTYAMQYDELSVALGYALFGTAGAPAGKAAPAAKSTKKPAAEDDDMDLFGDDEDETPKATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL
Sbjct:    1 MHTKTLTCSALQVSLMTYAMQYDELSVALGYALFGTAGAPAGKAAPAAKSTKKPAAEDDDMDLFGDDEDETPKATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189          
BLAST of EWM23852.1 vs. NCBI_GenBank
Match: gi|553182754|ref|XP_005853780.1| (ef-1 guanine nucleotide exchange domain-containing [Nannochloropsis gaditana CCMP526] >gi|422295281|gb|EKU22580.1| ef-1 guanine nucleotide exchange domain-containing [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 331.257 bits (848), Expect = 2.585e-114
Identity = 167/174 (95.98%), Postives = 167/174 (95.98%), Query Frame = 0
Query:   16 MTYAMQYDELSVALGYALFGTAGAPAGKAAPAAKSTKKPAAEDDDMDLFGDDEDETPKATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189
            MTYAMQYDELSVALGYALFGTAGAPAGKAAPAA       AEDDDMDLFGDDEDETPKATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL
Sbjct:    1 MTYAMQYDELSVALGYALFGTAGAPAGKAAPAA------TAEDDDMDLFGDDEDETPKATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 168          
BLAST of EWM23852.1 vs. NCBI_GenBank
Match: gi|585109314|gb|EWM27134.1| (ef-1 guanine nucleotide exchange domain-containing [Nannochloropsis gaditana])

HSP 1 Score: 191.815 bits (486), Expect = 1.459e-58
Identity = 108/122 (88.52%), Postives = 117/122 (95.90%), Query Frame = 0
Query:   68 EDETPKATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189
            ED + K TMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDT+V+LD LYKTIK+E+CP GLTWGEGYNK+PVAFGIFKLIIS+VV+DDEVSIDDVV+KIEAMEDSVQSVDINSFNKL
Sbjct:  103 EDSSAKPTMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVNLDELYKTIKEEICPSGLTWGEGYNKSPVAFGIFKLIISMVVYDDEVSIDDVVEKIEAMEDSVQSVDINSFNKL 224          
BLAST of EWM23852.1 vs. NCBI_GenBank
Match: gi|299472298|emb|CBN79710.1| (Lysyl-tRNA ligase [Ectocarpus siliculosus])

HSP 1 Score: 117.472 bits (293), Expect = 3.338e-27
Identity = 68/133 (51.13%), Postives = 85/133 (63.91%), Query Frame = 0
Query:   63 LFGDDE----DETP--KATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189
            LFGDDE     E P   A MSRAEQ+AA K+ K+A    NKK DRSQIV EVKP +   DL  L+  I+K     GL WGE +   PVAFG+ KL++S VV D +V ++D+ D IE  ED VQSVD+ + N+L
Sbjct:  722 LFGDDEAGEEGEAPASGAGMSRAEQMAAAKSAKDA----NKKVDRSQIVFEVKPWEAGADLKGLFDKIRKTEID-GLVWGEAHKLVPVAFGVKKLVLSCVVVDSKVGVEDITDVIEKFEDEVQSVDMTTMNRL 849          
BLAST of EWM23852.1 vs. NCBI_GenBank
Match: gi|461993|sp|P32192.2|EF1D_ARTSA (RecName: Full=Elongation factor 1-delta; Short=EF-1-delta)

HSP 1 Score: 107.457 bits (267), Expect = 2.301e-25
Identity = 68/146 (46.58%), Postives = 94/146 (64.38%), Query Frame = 0
Query:   44 AAPAAKSTKKPAAEDDDMDLFGDDEDETPKATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189
            AAP  K       EDDD+DLFG DE E+ +A   +AE++AA +A+K  K     K   S I+L++KP D + D+ A+ + ++  +   GL WG      PVAFG+ KL IS VV DD+VS+D++V+KIEA ED VQSVDI +FNK+
Sbjct:  103 AAPPQKEE-----EDDDVDLFGSDE-ESEEAEKVKAERIAAYQAKKSHKPTVIAK---SSILLDIKPWDDETDMGAMEREVRS-IAMDGLIWG-ASKLVPVAFGVKKLQISCVVEDDKVSVDELVEKIEAFEDYVQSVDIAAFNKI 237          
BLAST of EWM23852.1 vs. NCBI_GenBank
Match: gi|299470140|emb|CBN78169.2| (conserved unknown protein (Partial), partial [Ectocarpus siliculosus])

HSP 1 Score: 104.375 bits (259), Expect = 6.780e-25
Identity = 85/181 (46.96%), Postives = 110/181 (60.77%), Query Frame = 0
Query:   20 MQYDELSVALGY-ALFGTAGAPAGKA------APAA---KSTKKPAAEDDDMDLFGDDEDETPKATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALY-KTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189
            + +DE+++AL Y +L GTA APA  A      AP     K+ KKP A+DD  DLF DDED  P     + E  A   A  +  + A KK DRSQIV EVKP DT+ DL  L+ K    E+   GL WGE +   PVAFG+ KL++S VV DD+V ++D+ D IEA ED VQSVD+ + N+L
Sbjct:    7 ISFDEMAMALSYISLGGTAAAPASSARGLPSLAPVKQEKKAAKKPEADDDMDDLFDDDEDAAPA---KKEESRADKMAAAKKAKDAKKKIDRSQIVFEVKPWDTETDLKELFGKICATEI--DGLVWGEAHKLVPVAFGVKKLVLSCVVEDDKVGVEDITDVIEAFEDYVQSVDMTTMNRL 182          
BLAST of EWM23852.1 vs. NCBI_GenBank
Match: gi|498948860|ref|XP_004522762.1| (probable elongation factor 1-delta isoform X2 [Ceratitis capitata])

HSP 1 Score: 104.375 bits (259), Expect = 4.909e-24
Identity = 73/157 (46.50%), Postives = 98/157 (62.42%), Query Frame = 0
Query:   33 LFGTAGAPAGKAAPAAKSTKKPAAEDDDMDLFGDDEDETPKATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189
            L G A AP   +APA  +  +P A+DDD+DLFG DE+E   A   R E++AA  A+K  K +   K   S ++L+VKP D + DL  +   I+K +   GL WG      PVAFGI KL IS VV DD+VSID + ++IE +ED VQSVD+ +FNK+
Sbjct:  117 LSGKASAPI--SAPA--TATQPEADDDDVDLFGSDEEEDENAARIREERLAAYAAKKSKKPQIIAK---SSLILDVKPWDDETDLKVMETEIRK-ITTDGLLWG-ASKFVPVAFGIQKLSISCVVEDDKVSIDWLTEEIEKLEDYVQSVDVAAFNKI 264          
BLAST of EWM23852.1 vs. NCBI_GenBank
Match: gi|671692532|emb|CDS07263.1| (hypothetical protein LRAMOSA01212 [Lichtheimia ramosa])

HSP 1 Score: 101.679 bits (252), Expect = 1.240e-23
Identity = 66/143 (46.15%), Postives = 93/143 (65.03%), Query Frame = 0
Query:   49 KSTKKPAAE-DDDMDLFGDDEDETPKATMS-RAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189
            KS   PAAE DDD+DLFG D++E  +     +A+++A   A+K AK K   K   + + LEVKP D + D+DA+ K ++ E+   GL WG G+   PV FGI KL I+ VV DD+VS+DD+ + IEA+ED VQSVD+ +  K+
Sbjct:   57 KSGAAPAAEEDDDIDLFGSDDEEVDEEAERIKAQRLAEYNAKKAAKPKPIAK---TTVTLEVKPWDDETDIDAMTKAVR-EISMEGLLWG-GFQHVPVGFGIKKLQINCVVEDDKVSMDDLTEAIEALEDYVQSVDVAAMQKI 194          
BLAST of EWM23852.1 vs. NCBI_GenBank
Match: gi|1184342788|ref|XP_020713496.1| (probable elongation factor 1-delta isoform X1 [Ceratitis capitata])

HSP 1 Score: 103.99 bits (258), Expect = 3.659e-23
Identity = 73/157 (46.50%), Postives = 98/157 (62.42%), Query Frame = 0
Query:   33 LFGTAGAPAGKAAPAAKSTKKPAAEDDDMDLFGDDEDETPKATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189
            L G A AP   +APA  +  +P A+DDD+DLFG DE+E   A   R E++AA  A+K  K +   K   S ++L+VKP D + DL  +   I+K +   GL WG      PVAFGI KL IS VV DD+VSID + ++IE +ED VQSVD+ +FNK+
Sbjct:  215 LSGKASAPI--SAPA--TATQPEADDDDVDLFGSDEEEDENAARIREERLAAYAAKKSKKPQIIAK---SSLILDVKPWDDETDLKVMETEIRK-ITTDGLLWG-ASKFVPVAFGIQKLSISCVVEDDKVSIDWLTEEIEKLEDYVQSVDVAAFNKI 362          
BLAST of EWM23852.1 vs. NCBI_GenBank
Match: gi|661177133|emb|CDH59939.1| (elongation factor 1-beta [Lichtheimia corymbifera JMRC:FSU:9682])

HSP 1 Score: 100.138 bits (248), Expect = 5.089e-23
Identity = 70/160 (43.75%), Postives = 100/160 (62.50%), Query Frame = 0
Query:   39 APAGKAAPAAK-------STKKPAAE-DDDMDLFGDDEDETPKATMS-RAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189
            APA + A A+K       S   PAAE DDD+DLFG D++E  +     +A+++A   A+K AK K   K   + + LEVKP D + D+DA+ K ++ ++   GL WG G+   PV FGI KL I+ VV DD+VS+DD+ + IEA+ED VQSVD+ +  K+
Sbjct:   40 APAAEFANASKWYADVNKSGAAPAAEEDDDIDLFGSDDEEVDEEAERIKAQRLAEYNAKKAAKPKPIAK---TTVTLEVKPWDDETDIDAMTKAVR-DIAMEGLLWG-GFQHVPVGFGIKKLQINCVVEDDKVSMDDLTEAIEALEDYVQSVDVAAMQKI 194          
The following BLAST results are available for this feature:
BLAST of EWM23852.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105124|gb|EWM23852.1|1.095e-134100.00ef-1 guanine nucleotide exchange domain-containing... [more]
gi|553182754|ref|XP_005853780.1|2.585e-11495.98ef-1 guanine nucleotide exchange domain-containing... [more]
gi|585109314|gb|EWM27134.1|1.459e-5888.52ef-1 guanine nucleotide exchange domain-containing... [more]
gi|299472298|emb|CBN79710.1|3.338e-2751.13Lysyl-tRNA ligase [Ectocarpus siliculosus][more]
gi|461993|sp|P32192.2|EF1D_ARTSA2.301e-2546.58RecName: Full=Elongation factor 1-delta; Short=EF-... [more]
gi|299470140|emb|CBN78169.2|6.780e-2546.96conserved unknown protein (Partial), partial [Ecto... [more]
gi|498948860|ref|XP_004522762.1|4.909e-2446.50probable elongation factor 1-delta isoform X2 [Cer... [more]
gi|671692532|emb|CDS07263.1|1.240e-2346.15hypothetical protein LRAMOSA01212 [Lichtheimia ram... [more]
gi|1184342788|ref|XP_020713496.1|3.659e-2346.50probable elongation factor 1-delta isoform X1 [Cer... [more]
gi|661177133|emb|CDH59939.1|5.089e-2343.75elongation factor 1-beta [Lichtheimia corymbifera ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6836rna6836Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications