EWM23852.1, cds6820 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23852.1 vs. NCBI_GenBank
Match: gi|585105124|gb|EWM23852.1| (ef-1 guanine nucleotide exchange domain-containing [Nannochloropsis gaditana]) HSP 1 Score: 383.259 bits (983), Expect = 1.095e-134 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query: 1 MHTKTLTCSALQVSLMTYAMQYDELSVALGYALFGTAGAPAGKAAPAAKSTKKPAAEDDDMDLFGDDEDETPKATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189
MHTKTLTCSALQVSLMTYAMQYDELSVALGYALFGTAGAPAGKAAPAAKSTKKPAAEDDDMDLFGDDEDETPKATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL
Sbjct: 1 MHTKTLTCSALQVSLMTYAMQYDELSVALGYALFGTAGAPAGKAAPAAKSTKKPAAEDDDMDLFGDDEDETPKATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189
BLAST of EWM23852.1 vs. NCBI_GenBank
Match: gi|553182754|ref|XP_005853780.1| (ef-1 guanine nucleotide exchange domain-containing [Nannochloropsis gaditana CCMP526] >gi|422295281|gb|EKU22580.1| ef-1 guanine nucleotide exchange domain-containing [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 331.257 bits (848), Expect = 2.585e-114 Identity = 167/174 (95.98%), Postives = 167/174 (95.98%), Query Frame = 0
Query: 16 MTYAMQYDELSVALGYALFGTAGAPAGKAAPAAKSTKKPAAEDDDMDLFGDDEDETPKATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189
MTYAMQYDELSVALGYALFGTAGAPAGKAAPAA AEDDDMDLFGDDEDETPKATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL
Sbjct: 1 MTYAMQYDELSVALGYALFGTAGAPAGKAAPAA------TAEDDDMDLFGDDEDETPKATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 168
BLAST of EWM23852.1 vs. NCBI_GenBank
Match: gi|585109314|gb|EWM27134.1| (ef-1 guanine nucleotide exchange domain-containing [Nannochloropsis gaditana]) HSP 1 Score: 191.815 bits (486), Expect = 1.459e-58 Identity = 108/122 (88.52%), Postives = 117/122 (95.90%), Query Frame = 0
Query: 68 EDETPKATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189
ED + K TMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDT+V+LD LYKTIK+E+CP GLTWGEGYNK+PVAFGIFKLIIS+VV+DDEVSIDDVV+KIEAMEDSVQSVDINSFNKL
Sbjct: 103 EDSSAKPTMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVNLDELYKTIKEEICPSGLTWGEGYNKSPVAFGIFKLIISMVVYDDEVSIDDVVEKIEAMEDSVQSVDINSFNKL 224
BLAST of EWM23852.1 vs. NCBI_GenBank
Match: gi|299472298|emb|CBN79710.1| (Lysyl-tRNA ligase [Ectocarpus siliculosus]) HSP 1 Score: 117.472 bits (293), Expect = 3.338e-27 Identity = 68/133 (51.13%), Postives = 85/133 (63.91%), Query Frame = 0
Query: 63 LFGDDE----DETP--KATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189
LFGDDE E P A MSRAEQ+AA K+ K+A NKK DRSQIV EVKP + DL L+ I+K GL WGE + PVAFG+ KL++S VV D +V ++D+ D IE ED VQSVD+ + N+L
Sbjct: 722 LFGDDEAGEEGEAPASGAGMSRAEQMAAAKSAKDA----NKKVDRSQIVFEVKPWEAGADLKGLFDKIRKTEID-GLVWGEAHKLVPVAFGVKKLVLSCVVVDSKVGVEDITDVIEKFEDEVQSVDMTTMNRL 849
BLAST of EWM23852.1 vs. NCBI_GenBank
Match: gi|461993|sp|P32192.2|EF1D_ARTSA (RecName: Full=Elongation factor 1-delta; Short=EF-1-delta) HSP 1 Score: 107.457 bits (267), Expect = 2.301e-25 Identity = 68/146 (46.58%), Postives = 94/146 (64.38%), Query Frame = 0
Query: 44 AAPAAKSTKKPAAEDDDMDLFGDDEDETPKATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189
AAP K EDDD+DLFG DE E+ +A +AE++AA +A+K K K S I+L++KP D + D+ A+ + ++ + GL WG PVAFG+ KL IS VV DD+VS+D++V+KIEA ED VQSVDI +FNK+
Sbjct: 103 AAPPQKEE-----EDDDVDLFGSDE-ESEEAEKVKAERIAAYQAKKSHKPTVIAK---SSILLDIKPWDDETDMGAMEREVRS-IAMDGLIWG-ASKLVPVAFGVKKLQISCVVEDDKVSVDELVEKIEAFEDYVQSVDIAAFNKI 237
BLAST of EWM23852.1 vs. NCBI_GenBank
Match: gi|299470140|emb|CBN78169.2| (conserved unknown protein (Partial), partial [Ectocarpus siliculosus]) HSP 1 Score: 104.375 bits (259), Expect = 6.780e-25 Identity = 85/181 (46.96%), Postives = 110/181 (60.77%), Query Frame = 0
Query: 20 MQYDELSVALGY-ALFGTAGAPAGKA------APAA---KSTKKPAAEDDDMDLFGDDEDETPKATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALY-KTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189
+ +DE+++AL Y +L GTA APA A AP K+ KKP A+DD DLF DDED P + E A A + + A KK DRSQIV EVKP DT+ DL L+ K E+ GL WGE + PVAFG+ KL++S VV DD+V ++D+ D IEA ED VQSVD+ + N+L
Sbjct: 7 ISFDEMAMALSYISLGGTAAAPASSARGLPSLAPVKQEKKAAKKPEADDDMDDLFDDDEDAAPA---KKEESRADKMAAAKKAKDAKKKIDRSQIVFEVKPWDTETDLKELFGKICATEI--DGLVWGEAHKLVPVAFGVKKLVLSCVVEDDKVGVEDITDVIEAFEDYVQSVDMTTMNRL 182
BLAST of EWM23852.1 vs. NCBI_GenBank
Match: gi|498948860|ref|XP_004522762.1| (probable elongation factor 1-delta isoform X2 [Ceratitis capitata]) HSP 1 Score: 104.375 bits (259), Expect = 4.909e-24 Identity = 73/157 (46.50%), Postives = 98/157 (62.42%), Query Frame = 0
Query: 33 LFGTAGAPAGKAAPAAKSTKKPAAEDDDMDLFGDDEDETPKATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189
L G A AP +APA + +P A+DDD+DLFG DE+E A R E++AA A+K K + K S ++L+VKP D + DL + I+K + GL WG PVAFGI KL IS VV DD+VSID + ++IE +ED VQSVD+ +FNK+
Sbjct: 117 LSGKASAPI--SAPA--TATQPEADDDDVDLFGSDEEEDENAARIREERLAAYAAKKSKKPQIIAK---SSLILDVKPWDDETDLKVMETEIRK-ITTDGLLWG-ASKFVPVAFGIQKLSISCVVEDDKVSIDWLTEEIEKLEDYVQSVDVAAFNKI 264
BLAST of EWM23852.1 vs. NCBI_GenBank
Match: gi|671692532|emb|CDS07263.1| (hypothetical protein LRAMOSA01212 [Lichtheimia ramosa]) HSP 1 Score: 101.679 bits (252), Expect = 1.240e-23 Identity = 66/143 (46.15%), Postives = 93/143 (65.03%), Query Frame = 0
Query: 49 KSTKKPAAE-DDDMDLFGDDEDETPKATMS-RAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189
KS PAAE DDD+DLFG D++E + +A+++A A+K AK K K + + LEVKP D + D+DA+ K ++ E+ GL WG G+ PV FGI KL I+ VV DD+VS+DD+ + IEA+ED VQSVD+ + K+
Sbjct: 57 KSGAAPAAEEDDDIDLFGSDDEEVDEEAERIKAQRLAEYNAKKAAKPKPIAK---TTVTLEVKPWDDETDIDAMTKAVR-EISMEGLLWG-GFQHVPVGFGIKKLQINCVVEDDKVSMDDLTEAIEALEDYVQSVDVAAMQKI 194
BLAST of EWM23852.1 vs. NCBI_GenBank
Match: gi|1184342788|ref|XP_020713496.1| (probable elongation factor 1-delta isoform X1 [Ceratitis capitata]) HSP 1 Score: 103.99 bits (258), Expect = 3.659e-23 Identity = 73/157 (46.50%), Postives = 98/157 (62.42%), Query Frame = 0
Query: 33 LFGTAGAPAGKAAPAAKSTKKPAAEDDDMDLFGDDEDETPKATMSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189
L G A AP +APA + +P A+DDD+DLFG DE+E A R E++AA A+K K + K S ++L+VKP D + DL + I+K + GL WG PVAFGI KL IS VV DD+VSID + ++IE +ED VQSVD+ +FNK+
Sbjct: 215 LSGKASAPI--SAPA--TATQPEADDDDVDLFGSDEEEDENAARIREERLAAYAAKKSKKPQIIAK---SSLILDVKPWDDETDLKVMETEIRK-ITTDGLLWG-ASKFVPVAFGIQKLSISCVVEDDKVSIDWLTEEIEKLEDYVQSVDVAAFNKI 362
BLAST of EWM23852.1 vs. NCBI_GenBank
Match: gi|661177133|emb|CDH59939.1| (elongation factor 1-beta [Lichtheimia corymbifera JMRC:FSU:9682]) HSP 1 Score: 100.138 bits (248), Expect = 5.089e-23 Identity = 70/160 (43.75%), Postives = 100/160 (62.50%), Query Frame = 0
Query: 39 APAGKAAPAAK-------STKKPAAE-DDDMDLFGDDEDETPKATMS-RAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189
APA + A A+K S PAAE DDD+DLFG D++E + +A+++A A+K AK K K + + LEVKP D + D+DA+ K ++ ++ GL WG G+ PV FGI KL I+ VV DD+VS+DD+ + IEA+ED VQSVD+ + K+
Sbjct: 40 APAAEFANASKWYADVNKSGAAPAAEEDDDIDLFGSDDEEVDEEAERIKAQRLAEYNAKKAAKPKPIAK---TTVTLEVKPWDDETDIDAMTKAVR-DIAMEGLLWG-GFQHVPVGFGIKKLQINCVVEDDKVSMDDLTEAIEALEDYVQSVDVAAMQKI 194 The following BLAST results are available for this feature:
BLAST of EWM23852.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|