EWM23860.1, cds6813 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23860.1 vs. NCBI_GenBank
Match: gi|585105135|gb|EWM23860.1| (hypothetical protein Naga_100903g1 [Nannochloropsis gaditana]) HSP 1 Score: 395.201 bits (1014), Expect = 3.622e-139 Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0
Query: 1 MVRLCNCGCAQDGETDPPAPSFSSRPHPIAPPPPPRVDSLTLMSEILRGAHVVIENDRGAFYSWFVRMQDSYRRTSSHLSTVPMYGIDQGSVLRTILTGRREGRRERGVRVLFFVTGHLMLSSARHLCCCYFVARKRLASSLLMPGQTALTRYSPTHPSLTCAPRFPSRPPYRTDGGRRHLDAVRRRRVGPVPASL 196
MVRLCNCGCAQDGETDPPAPSFSSRPHPIAPPPPPRVDSLTLMSEILRGAHVVIENDRGAFYSWFVRMQDSYRRTSSHLSTVPMYGIDQGSVLRTILTGRREGRRERGVRVLFFVTGHLMLSSARHLCCCYFVARKRLASSLLMPGQTALTRYSPTHPSLTCAPRFPSRPPYRTDGGRRHLDAVRRRRVGPVPASL
Sbjct: 1 MVRLCNCGCAQDGETDPPAPSFSSRPHPIAPPPPPRVDSLTLMSEILRGAHVVIENDRGAFYSWFVRMQDSYRRTSSHLSTVPMYGIDQGSVLRTILTGRREGRRERGVRVLFFVTGHLMLSSARHLCCCYFVARKRLASSLLMPGQTALTRYSPTHPSLTCAPRFPSRPPYRTDGGRRHLDAVRRRRVGPVPASL 196
BLAST of EWM23860.1 vs. NCBI_GenBank
Match: gi|298706518|emb|CBJ29488.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 73.1738 bits (178), Expect = 8.991e-12 Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 0
Query: 42 LMSEILRGAHVVIENDRGAFYSWFVRMQDSYRRTSSHLSTVPMYGIDQGSVLRTILTG 99
++ E+L+GA+VVI D G FY WF MQD+Y RT SH ST GI +G+VLRT+LTG
Sbjct: 320 MLEEMLKGANVVISGDSGWFYRWFESMQDAYARTCSHFSTRSTLGIPEGTVLRTVLTG 377
BLAST of EWM23860.1 vs. NCBI_GenBank
Match: gi|669148184|ref|XP_008609654.1| (hypothetical protein SDRG_05703 [Saprolegnia diclina VS20] >gi|530738631|gb|EQC36873.1| hypothetical protein SDRG_05703 [Saprolegnia diclina VS20]) HSP 1 Score: 62.7734 bits (151), Expect = 2.106e-8 Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 0
Query: 42 LMSEILRGAHVVIENDRGAFYSWFVRMQ-DSYRRTSSHLSTVPMYGIDQGSVLRTILTG 99
++ EI++GAHV++END+GA+Y F + +Y R SSH S V Y + QG +L T+LTG
Sbjct: 130 VLMEIVKGAHVIVENDQGAYYELFRNITATTYTRISSHASIVSQYAVPQGPLLETLLTG 188
BLAST of EWM23860.1 vs. NCBI_GenBank
Match: gi|813124228|ref|XP_012196578.1| (hypothetical protein SPRG_02624 [Saprolegnia parasitica CBS 223.65] >gi|641539110|gb|KDO32931.1| hypothetical protein SPRG_02624 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 60.8474 bits (146), Expect = 6.699e-8 Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 0
Query: 42 LMSEILRGAHVVIENDRGAFYSWFVRMQ-DSYRRTSSHLSTVPMYGIDQGSVLRTILTG 99
L+ EILRGAHVV+ +DRG +Y + +Y+R SSH S+ P Y + QG +L TIL G
Sbjct: 121 LLMEILRGAHVVVADDRGYYYDLLQNVSAQAYKRISSHYSSAPQYAVPQGPLLDTILVG 179
BLAST of EWM23860.1 vs. NCBI_GenBank
Match: gi|669148188|ref|XP_008609656.1| (hypothetical protein SDRG_05705 [Saprolegnia diclina VS20] >gi|530738633|gb|EQC36875.1| hypothetical protein SDRG_05705 [Saprolegnia diclina VS20]) HSP 1 Score: 59.3066 bits (142), Expect = 3.018e-7 Identity = 29/59 (49.15%), Postives = 37/59 (62.71%), Query Frame = 0
Query: 42 LMSEILRGAHVVIENDRGAFYSWFVRMQ-DSYRRTSSHLSTVPMYGIDQGSVLRTILTG 99
L+ EILRGAHVV+ +DRG +Y + +Y R SSH S P Y + QG +L TIL G
Sbjct: 116 LLMEILRGAHVVVADDRGYYYDLLQNVSGQAYARISSHYSAAPQYAVPQGPLLDTILVG 174 The following BLAST results are available for this feature:
BLAST of EWM23860.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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