EWM23860.1, cds6813 (CDS) Nannochloropsis gaditana

Overview
NameEWM23860.1
Unique Namecds6813
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:594829..595419 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23860.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100903g1.10563.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:594829..595419 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM23860.1 vs. NCBI_GenBank
Match: gi|585105135|gb|EWM23860.1| (hypothetical protein Naga_100903g1 [Nannochloropsis gaditana])

HSP 1 Score: 395.201 bits (1014), Expect = 3.622e-139
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0
Query:    1 MVRLCNCGCAQDGETDPPAPSFSSRPHPIAPPPPPRVDSLTLMSEILRGAHVVIENDRGAFYSWFVRMQDSYRRTSSHLSTVPMYGIDQGSVLRTILTGRREGRRERGVRVLFFVTGHLMLSSARHLCCCYFVARKRLASSLLMPGQTALTRYSPTHPSLTCAPRFPSRPPYRTDGGRRHLDAVRRRRVGPVPASL 196
            MVRLCNCGCAQDGETDPPAPSFSSRPHPIAPPPPPRVDSLTLMSEILRGAHVVIENDRGAFYSWFVRMQDSYRRTSSHLSTVPMYGIDQGSVLRTILTGRREGRRERGVRVLFFVTGHLMLSSARHLCCCYFVARKRLASSLLMPGQTALTRYSPTHPSLTCAPRFPSRPPYRTDGGRRHLDAVRRRRVGPVPASL
Sbjct:    1 MVRLCNCGCAQDGETDPPAPSFSSRPHPIAPPPPPRVDSLTLMSEILRGAHVVIENDRGAFYSWFVRMQDSYRRTSSHLSTVPMYGIDQGSVLRTILTGRREGRRERGVRVLFFVTGHLMLSSARHLCCCYFVARKRLASSLLMPGQTALTRYSPTHPSLTCAPRFPSRPPYRTDGGRRHLDAVRRRRVGPVPASL 196          
BLAST of EWM23860.1 vs. NCBI_GenBank
Match: gi|298706518|emb|CBJ29488.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 73.1738 bits (178), Expect = 8.991e-12
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 0
Query:   42 LMSEILRGAHVVIENDRGAFYSWFVRMQDSYRRTSSHLSTVPMYGIDQGSVLRTILTG 99
            ++ E+L+GA+VVI  D G FY WF  MQD+Y RT SH ST    GI +G+VLRT+LTG
Sbjct:  320 MLEEMLKGANVVISGDSGWFYRWFESMQDAYARTCSHFSTRSTLGIPEGTVLRTVLTG 377          
BLAST of EWM23860.1 vs. NCBI_GenBank
Match: gi|669148184|ref|XP_008609654.1| (hypothetical protein SDRG_05703 [Saprolegnia diclina VS20] >gi|530738631|gb|EQC36873.1| hypothetical protein SDRG_05703 [Saprolegnia diclina VS20])

HSP 1 Score: 62.7734 bits (151), Expect = 2.106e-8
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 0
Query:   42 LMSEILRGAHVVIENDRGAFYSWFVRMQ-DSYRRTSSHLSTVPMYGIDQGSVLRTILTG 99
            ++ EI++GAHV++END+GA+Y  F  +   +Y R SSH S V  Y + QG +L T+LTG
Sbjct:  130 VLMEIVKGAHVIVENDQGAYYELFRNITATTYTRISSHASIVSQYAVPQGPLLETLLTG 188          
BLAST of EWM23860.1 vs. NCBI_GenBank
Match: gi|813124228|ref|XP_012196578.1| (hypothetical protein SPRG_02624 [Saprolegnia parasitica CBS 223.65] >gi|641539110|gb|KDO32931.1| hypothetical protein SPRG_02624 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 60.8474 bits (146), Expect = 6.699e-8
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 0
Query:   42 LMSEILRGAHVVIENDRGAFYSWFVRMQ-DSYRRTSSHLSTVPMYGIDQGSVLRTILTG 99
            L+ EILRGAHVV+ +DRG +Y     +   +Y+R SSH S+ P Y + QG +L TIL G
Sbjct:  121 LLMEILRGAHVVVADDRGYYYDLLQNVSAQAYKRISSHYSSAPQYAVPQGPLLDTILVG 179          
BLAST of EWM23860.1 vs. NCBI_GenBank
Match: gi|669148188|ref|XP_008609656.1| (hypothetical protein SDRG_05705 [Saprolegnia diclina VS20] >gi|530738633|gb|EQC36875.1| hypothetical protein SDRG_05705 [Saprolegnia diclina VS20])

HSP 1 Score: 59.3066 bits (142), Expect = 3.018e-7
Identity = 29/59 (49.15%), Postives = 37/59 (62.71%), Query Frame = 0
Query:   42 LMSEILRGAHVVIENDRGAFYSWFVRMQ-DSYRRTSSHLSTVPMYGIDQGSVLRTILTG 99
            L+ EILRGAHVV+ +DRG +Y     +   +Y R SSH S  P Y + QG +L TIL G
Sbjct:  116 LLMEILRGAHVVVADDRGYYYDLLQNVSGQAYARISSHYSAAPQYAVPQGPLLDTILVG 174          
The following BLAST results are available for this feature:
BLAST of EWM23860.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585105135|gb|EWM23860.1|3.622e-139100.00hypothetical protein Naga_100903g1 [Nannochloropsi... [more]
gi|298706518|emb|CBJ29488.1|8.991e-1256.90expressed unknown protein [Ectocarpus siliculosus][more]
gi|669148184|ref|XP_008609654.1|2.106e-847.46hypothetical protein SDRG_05703 [Saprolegnia dicli... [more]
gi|813124228|ref|XP_012196578.1|6.699e-849.15hypothetical protein SPRG_02624 [Saprolegnia paras... [more]
gi|669148188|ref|XP_008609656.1|3.018e-749.15hypothetical protein SDRG_05705 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6829rna6829Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications