EWM30614.1, cds68 (CDS) Nannochloropsis gaditana

Overview
NameEWM30614.1
Unique Namecds68
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:191560..192108 +
Alignment locationCM002455.1:192223..192375 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30614.1
Productobp33pep like protein
Orig transcript idgnl|cribi|Naga_100129g13.1892.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:191560..192108 +
CM002455.1supercontigCM002455.1:192223..192375 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003723RNA binding
GO:0008173RNA methyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR029028Alpha/beta_knot_MTases
IPR029026tRNA_m1G_MTases_N
IPR001537SpoU_MeTrfase
Homology
BLAST of EWM30614.1 vs. NCBI_GenBank
Match: gi|585113286|gb|EWM30614.1| (obp33pep like protein [Nannochloropsis gaditana])

HSP 1 Score: 480.715 bits (1236), Expect = 1.055e-171
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0
Query:    1 MEGAVNDDSLSTKGGHLLTKPSSILSIKCMAQKPRLLLLLHHISKRQNVRTLLTSAAAFGAEVLVVGQPSFNETSHVPRRLAEALTQGENASICQPQPLYRRFHGTLEECRDQLREQNVQIWGVEIGEAAVNVEEIPWATSASKWEKEGRGGIALLLGNEGTGMSARQARVCDGFVYISQYGQGTASLNVAVAGSIVMHRFSEWAADSCQGGAEEERHVNDEFSASSVSSRGM 233
            MEGAVNDDSLSTKGGHLLTKPSSILSIKCMAQKPRLLLLLHHISKRQNVRTLLTSAAAFGAEVLVVGQPSFNETSHVPRRLAEALTQGENASICQPQPLYRRFHGTLEECRDQLREQNVQIWGVEIGEAAVNVEEIPWATSASKWEKEGRGGIALLLGNEGTGMSARQARVCDGFVYISQYGQGTASLNVAVAGSIVMHRFSEWAADSCQGGAEEERHVNDEFSASSVSSRGM
Sbjct:    1 MEGAVNDDSLSTKGGHLLTKPSSILSIKCMAQKPRLLLLLHHISKRQNVRTLLTSAAAFGAEVLVVGQPSFNETSHVPRRLAEALTQGENASICQPQPLYRRFHGTLEECRDQLREQNVQIWGVEIGEAAVNVEEIPWATSASKWEKEGRGGIALLLGNEGTGMSARQARVCDGFVYISQYGQGTASLNVAVAGSIVMHRFSEWAADSCQGGAEEERHVNDEFSASSVSSRGM 233          
BLAST of EWM30614.1 vs. NCBI_GenBank
Match: gi|902238215|gb|KNA25084.1| (hypothetical protein SOVF_009760 [Spinacia oleracea])

HSP 1 Score: 127.872 bits (320), Expect = 1.060e-32
Identity = 73/169 (43.20%), Postives = 100/169 (59.17%), Query Frame = 0
Query:   38 LLLHHISKRQNVRTLLTSAAAFG-AEVLVVGQPSFNETSHVPRRLAEALTQGENASICQPQPLYRRFHGTLEECRDQLREQNVQIWGVEIGEAAVNVEEIPWATSASKWEKEGRGGIALLLGNEGTGMSARQARVCDGFVYISQYGQGTASLNVAVAGSIVMHRFSEWA 205
            +++H+I+KR NV TL  SA AFG +E+++VG+  FN             + G + S+   +  +R FH +L E R+ L+E+N  I GVEI   AV V + P+  S            A LLGNEGTG+S ++  +CD FVYI QYG GTASLNV +A SIV+H F  WA
Sbjct:   18 VMVHNIAKRHNVGTLARSATAFGVSELILVGRRDFN-------------SFGNHGSVSHLR--FRHFH-SLVEARNYLKERNCDICGVEITNDAVPVNQHPFTRST-----------AFLLGNEGTGLSTKECEICDFFVYIPQYGSGTASLNVTIAASIVLHHFGAWA 159          
BLAST of EWM30614.1 vs. NCBI_GenBank
Match: gi|460367226|ref|XP_004229476.1| (PREDICTED: uncharacterized protein LOC101267645 [Solanum lycopersicum])

HSP 1 Score: 127.102 bits (318), Expect = 1.225e-32
Identity = 79/184 (42.93%), Postives = 103/184 (55.98%), Query Frame = 0
Query:   32 QKPRLLLLLHHISKRQNVRTLLTSAAAFG-AEVLVVGQPSFN------ETSHVPRRLAEALTQGENASICQPQPLYRRFHGTLEECRDQLREQNVQIWGVEIGEAAVNVEEIPWATSASKWEKEGRGGIALLLGNEGTGMSARQARVCDGFVYISQYGQGTASLNVAVAGSIVMHRFSEWAADS 208
            +K    +L+H+I+KR NV TL  SA AFG +E+++VG+  FN       TSHV                      +R FH +L + +  L+E++  I GVEI E AV V E P+  S            A LLGNEGTG+SA++  +CD FVYI QYG GTASLNV VA SIV+H+F  WA  S
Sbjct:    5 KKLESFVLVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFGSHGSTSHVR---------------------FRHFH-SLADAKTFLKERDCDICGVEITENAVAVNEHPFKRST-----------AFLLGNEGTGLSAKECEICDFFVYIPQYGCGTASLNVTVAASIVLHQFGVWAGFS 155          
BLAST of EWM30614.1 vs. NCBI_GenBank
Match: gi|969996640|ref|XP_015064171.1| (PREDICTED: putative TrmH family tRNA/rRNA methyltransferase [Solanum pennellii])

HSP 1 Score: 127.102 bits (318), Expect = 1.293e-32
Identity = 79/184 (42.93%), Postives = 103/184 (55.98%), Query Frame = 0
Query:   32 QKPRLLLLLHHISKRQNVRTLLTSAAAFG-AEVLVVGQPSFN------ETSHVPRRLAEALTQGENASICQPQPLYRRFHGTLEECRDQLREQNVQIWGVEIGEAAVNVEEIPWATSASKWEKEGRGGIALLLGNEGTGMSARQARVCDGFVYISQYGQGTASLNVAVAGSIVMHRFSEWAADS 208
            +K    +L+H+I+KR NV TL  SA AFG +E+++VG+  FN       TSHV                      +R FH +L + +  L+E++  I GVEI E AV V E P+  S            A LLGNEGTG+SA++  +CD FVYI QYG GTASLNV VA SIV+H+F  WA  S
Sbjct:    5 KKLESFVLVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFGSHGSTSHVR---------------------FRHFH-SLADAKTFLKERDCDICGVEITENAVAVNEHPFKRST-----------AFLLGNEGTGLSAKECEICDFFVYIPQYGCGTASLNVTVAASIVLHQFGVWAGFS 155          
BLAST of EWM30614.1 vs. NCBI_GenBank
Match: gi|255551565|ref|XP_002516828.1| (PREDICTED: uncharacterized tRNA/rRNA methyltransferase YsgA [Ricinus communis] >gi|223543916|gb|EEF45442.1| rRNA methylase, putative [Ricinus communis])

HSP 1 Score: 126.716 bits (317), Expect = 1.389e-32
Identity = 76/172 (44.19%), Postives = 99/172 (57.56%), Query Frame = 0
Query:   38 LLLHHISKRQNVRTLLTSAAAFGA-EVLVVGQPSFNETSHVPRRLAEALTQGENASICQPQPLYRRFHGTLEECRDQLREQNVQIWGVEIGEAAVNVEEIPWATSASKWEKEGRGGIALLLGNEGTGMSARQARVCDGFVYISQYGQGTASLNVAVAGSIVMHRFSEWAADS 208
            +L+H+I+KR NV TL  SA AFG  E+++VG+  FN               G + S    +  +R FH +L   RD L+E+   I GVEI + A+ V E P+  S            A LLGNEGTG+SA++  +CD FVYI QYG+GTASLNV VA SIV+H F  WA  S
Sbjct:    7 VLVHNIAKRHNVGTLARSATAFGVTELILVGRRDFN-------------AFGSHGSTSHLR--FRHFH-SLLNARDYLKEKECDICGVEITDGALPVNEHPFKKST-----------AFLLGNEGTGLSAKECEICDFFVYIPQYGRGTASLNVTVAASIVLHHFGVWAGFS 151          
BLAST of EWM30614.1 vs. NCBI_GenBank
Match: gi|565399477|ref|XP_006365277.1| (PREDICTED: putative TrmH family tRNA/rRNA methyltransferase [Solanum tuberosum])

HSP 1 Score: 126.716 bits (317), Expect = 1.922e-32
Identity = 78/179 (43.58%), Postives = 101/179 (56.42%), Query Frame = 0
Query:   37 LLLLHHISKRQNVRTLLTSAAAFG-AEVLVVGQPSFN------ETSHVPRRLAEALTQGENASICQPQPLYRRFHGTLEECRDQLREQNVQIWGVEIGEAAVNVEEIPWATSASKWEKEGRGGIALLLGNEGTGMSARQARVCDGFVYISQYGQGTASLNVAVAGSIVMHRFSEWAADS 208
             +L+H+I+KR NV TL  SA AFG +E+++VG+  FN       TSHV                      +R FH +L + +  L+E++  I GVEI E AV V E P+  S            A LLGNEGTG+SA++  +CD FVYI QYG GTASLNV VA SIV+H+F  WA  S
Sbjct:   10 FVLVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFGSHGSTSHVR---------------------FRHFH-SLADAKTFLKERDCDICGVEITENAVAVNEHPFKRST-----------AFLLGNEGTGLSAKECEICDFFVYIPQYGCGTASLNVTVAASIVLHQFGVWAGFS 155          
BLAST of EWM30614.1 vs. NCBI_GenBank
Match: gi|224102553|ref|XP_002312722.1| (tRNA/rRNA methyltransferase family protein [Populus trichocarpa] >gi|118483281|gb|ABK93543.1| unknown [Populus trichocarpa] >gi|222852542|gb|EEE90089.1| tRNA/rRNA methyltransferase family protein [Populus trichocarpa])

HSP 1 Score: 125.946 bits (315), Expect = 2.974e-32
Identity = 75/178 (42.13%), Postives = 100/178 (56.18%), Query Frame = 0
Query:   38 LLLHHISKRQNVRTLLTSAAAFGA-EVLVVGQPSFNE------TSHVPRRLAEALTQGENASICQPQPLYRRFHGTLEECRDQLREQNVQIWGVEIGEAAVNVEEIPWATSASKWEKEGRGGIALLLGNEGTGMSARQARVCDGFVYISQYGQGTASLNVAVAGSIVMHRFSEWAADS 208
            +++H+I+KR NV TL  SA AFG  E+++VG+  FN       TSH+P                     +R FH +L + R+ L+E++  I GVEI ++A  V E P+  S            A LLGNEGTG+S ++  +CD FVYI QYG GTASLNV VA SIV+H F  WA  S
Sbjct:    7 VVVHNIAKRHNVGTLARSATAFGVKELILVGRRDFNSFGSHGSTSHLP---------------------FRHFH-SLSDARNFLKEKDCDICGVEITDSAFPVNEHPFKRST-----------AFLLGNEGTGLSTKECEICDFFVYIPQYGCGTASLNVTVAASIVLHHFGVWAGFS 151          
BLAST of EWM30614.1 vs. NCBI_GenBank
Match: gi|1026018521|ref|XP_016541294.1| (PREDICTED: putative TrmH family tRNA/rRNA methyltransferase [Capsicum annuum])

HSP 1 Score: 125.946 bits (315), Expect = 3.735e-32
Identity = 78/184 (42.39%), Postives = 103/184 (55.98%), Query Frame = 0
Query:   32 QKPRLLLLLHHISKRQNVRTLLTSAAAFG-AEVLVVGQPSFN------ETSHVPRRLAEALTQGENASICQPQPLYRRFHGTLEECRDQLREQNVQIWGVEIGEAAVNVEEIPWATSASKWEKEGRGGIALLLGNEGTGMSARQARVCDGFVYISQYGQGTASLNVAVAGSIVMHRFSEWAADS 208
            +K    +L+H+I+KR NV TL  SA AFG +E+++VG+  FN       TSHV                      +R FH +L + +  L+E++  I GVEI E AV V E P+  S            A LLGNEG+G+SA++  +CD FVYI QYG GTASLNV VA SIV+H+F  WA  S
Sbjct:    5 KKVESFVLVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFGSHGSTSHVR---------------------FRHFH-SLADAKTFLKERDCDICGVEITENAVAVNEHPFKRST-----------AFLLGNEGSGLSAKECEICDFFVYIPQYGCGTASLNVTVAASIVLHQFGVWAGFS 155          
BLAST of EWM30614.1 vs. NCBI_GenBank
Match: gi|697148822|ref|XP_009628601.1| (PREDICTED: uncharacterized protein LOC104118918 [Nicotiana tomentosiformis])

HSP 1 Score: 125.561 bits (314), Expect = 4.345e-32
Identity = 78/184 (42.39%), Postives = 103/184 (55.98%), Query Frame = 0
Query:   32 QKPRLLLLLHHISKRQNVRTLLTSAAAFG-AEVLVVGQPSFN------ETSHVPRRLAEALTQGENASICQPQPLYRRFHGTLEECRDQLREQNVQIWGVEIGEAAVNVEEIPWATSASKWEKEGRGGIALLLGNEGTGMSARQARVCDGFVYISQYGQGTASLNVAVAGSIVMHRFSEWAADS 208
            +K    +++H+I+KR NV TL  SA AFG +E+++VG+  FN       TSHV                      +R FH +L + +  L+E++  I GVEI E AV V E P+  S            A LLGNEGTG+SA++  +CD FVYI QYG GTASLNV VA SIV+H+F  WA  S
Sbjct:    5 KKIESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFGSHGSTSHVR---------------------FRHFH-SLTDAKTFLKERDCDICGVEITENAVAVNEHPFKRST-----------AFLLGNEGTGLSAKECEICDFFVYIPQYGCGTASLNVTVAASIVLHQFGVWAGFS 155          
BLAST of EWM30614.1 vs. NCBI_GenBank
Match: gi|1111133427|ref|XP_019253338.1| (PREDICTED: uncharacterized protein LOC109232125 [Nicotiana attenuata] >gi|1102142158|gb|OIS98546.1| hypothetical protein A4A49_18586 [Nicotiana attenuata])

HSP 1 Score: 125.561 bits (314), Expect = 4.836e-32
Identity = 78/184 (42.39%), Postives = 103/184 (55.98%), Query Frame = 0
Query:   32 QKPRLLLLLHHISKRQNVRTLLTSAAAFG-AEVLVVGQPSFN------ETSHVPRRLAEALTQGENASICQPQPLYRRFHGTLEECRDQLREQNVQIWGVEIGEAAVNVEEIPWATSASKWEKEGRGGIALLLGNEGTGMSARQARVCDGFVYISQYGQGTASLNVAVAGSIVMHRFSEWAADS 208
            +K    +++H+I+KR NV TL  SA AFG +E+++VG+  FN       TSHV                      +R FH +L + +  L+E++  I GVEI E AV V E P+  S            A LLGNEGTG+SA++  +CD FVYI QYG GTASLNV VA SIV+H+F  WA  S
Sbjct:    5 KKIESYVVVHNIAKRHNVGTLARSATAFGVSEMILVGRRDFNAFGSHGSTSHVR---------------------FRHFH-SLTDAKTFLKERDCDICGVEITENAVAVNEHPFKRST-----------AFLLGNEGTGLSAKECEICDFFVYIPQYGCGTASLNVTVAASIVLHQFGVWAGFS 155          
The following BLAST results are available for this feature:
BLAST of EWM30614.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113286|gb|EWM30614.1|1.055e-171100.00obp33pep like protein [Nannochloropsis gaditana][more]
gi|902238215|gb|KNA25084.1|1.060e-3243.20hypothetical protein SOVF_009760 [Spinacia olerace... [more]
gi|460367226|ref|XP_004229476.1|1.225e-3242.93PREDICTED: uncharacterized protein LOC101267645 [S... [more]
gi|969996640|ref|XP_015064171.1|1.293e-3242.93PREDICTED: putative TrmH family tRNA/rRNA methyltr... [more]
gi|255551565|ref|XP_002516828.1|1.389e-3244.19PREDICTED: uncharacterized tRNA/rRNA methyltransfe... [more]
gi|565399477|ref|XP_006365277.1|1.922e-3243.58PREDICTED: putative TrmH family tRNA/rRNA methyltr... [more]
gi|224102553|ref|XP_002312722.1|2.974e-3242.13tRNA/rRNA methyltransferase family protein [Populu... [more]
gi|1026018521|ref|XP_016541294.1|3.735e-3242.39PREDICTED: putative TrmH family tRNA/rRNA methyltr... [more]
gi|697148822|ref|XP_009628601.1|4.345e-3242.39PREDICTED: uncharacterized protein LOC104118918 [N... [more]
gi|1111133427|ref|XP_019253338.1|4.836e-3242.39PREDICTED: uncharacterized protein LOC109232125 [N... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna68rna68Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications