EWM23918.1, cds6750 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23918.1 vs. NCBI_GenBank
Match: gi|585105203|gb|EWM23918.1| (Protein of unknown function DUF1275 [Nannochloropsis gaditana]) HSP 1 Score: 1100.5 bits (2845), Expect = 0.000e+0 Identity = 530/530 (100.00%), Postives = 530/530 (100.00%), Query Frame = 0
Query: 1 MSSPGCVLPGFDIALITLSPSSTALAVKDRHRRWEKEEEREQENEAPPSPAVVQQKQTEPQNPPSNINDVPCPASKVNPPQGLQRQKSSYKNPGERPYFKVILTASFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRMDVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALFLIAAVEGIALLTEDSYPDSIFFIWLCAYACGLQNGLTSKFSGNAVRTTHLTGASTDLGIAMGHILKGRQGEWWKVKLHGVAVLGFFVGGILGFFTYRRFRHSALLFNIGITTTLAVAHTLYIAYHEGISPITVLESKTDIRMHKRRIVVAGDGKRQFSFYARPSPSGSALEALTLRTREKHLAAARPTSGKVVASPASTARHQKRHFPKNRAGEDADDHVALLISQETMNSSSAEGGTDENHRAHAMESAASPPVASQDDVWVDMVAMGQLAPSSSYEEANGPAVDMESVSSHLSHRSLQQYLDEEDLVPKPEDEGPLPEFAEDDFAAVEAEASICGEIDEF 530
MSSPGCVLPGFDIALITLSPSSTALAVKDRHRRWEKEEEREQENEAPPSPAVVQQKQTEPQNPPSNINDVPCPASKVNPPQGLQRQKSSYKNPGERPYFKVILTASFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRMDVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALFLIAAVEGIALLTEDSYPDSIFFIWLCAYACGLQNGLTSKFSGNAVRTTHLTGASTDLGIAMGHILKGRQGEWWKVKLHGVAVLGFFVGGILGFFTYRRFRHSALLFNIGITTTLAVAHTLYIAYHEGISPITVLESKTDIRMHKRRIVVAGDGKRQFSFYARPSPSGSALEALTLRTREKHLAAARPTSGKVVASPASTARHQKRHFPKNRAGEDADDHVALLISQETMNSSSAEGGTDENHRAHAMESAASPPVASQDDVWVDMVAMGQLAPSSSYEEANGPAVDMESVSSHLSHRSLQQYLDEEDLVPKPEDEGPLPEFAEDDFAAVEAEASICGEIDEF
Sbjct: 1 MSSPGCVLPGFDIALITLSPSSTALAVKDRHRRWEKEEEREQENEAPPSPAVVQQKQTEPQNPPSNINDVPCPASKVNPPQGLQRQKSSYKNPGERPYFKVILTASFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRMDVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALFLIAAVEGIALLTEDSYPDSIFFIWLCAYACGLQNGLTSKFSGNAVRTTHLTGASTDLGIAMGHILKGRQGEWWKVKLHGVAVLGFFVGGILGFFTYRRFRHSALLFNIGITTTLAVAHTLYIAYHEGISPITVLESKTDIRMHKRRIVVAGDGKRQFSFYARPSPSGSALEALTLRTREKHLAAARPTSGKVVASPASTARHQKRHFPKNRAGEDADDHVALLISQETMNSSSAEGGTDENHRAHAMESAASPPVASQDDVWVDMVAMGQLAPSSSYEEANGPAVDMESVSSHLSHRSLQQYLDEEDLVPKPEDEGPLPEFAEDDFAAVEAEASICGEIDEF 530
BLAST of EWM23918.1 vs. NCBI_GenBank
Match: gi|585106149|gb|EWM24629.1| (hypothetical protein Naga_100117g18 [Nannochloropsis gaditana]) HSP 1 Score: 249.595 bits (636), Expect = 2.508e-72 Identity = 124/272 (45.59%), Postives = 180/272 (66.18%), Query Frame = 0
Query: 66 NINDVPCPASKVNP--PQGLQRQK-SSYKNPGERPYFKVILTASFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRMDVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALFLIAAVEGIALLTEDSYPD----SIFFIWLCAYACGLQNGLTSKFSGNAVRTTHLTGASTDLGIAMGHILKGRQGEWWKVKLHGVAVLGFFVGGILGFFTYRRFRHSALLFNIGITTTLAVAHTLYIAYHEGISPITVLESKTDIRM 330
N+ + S ++P P ++R + S + +R F ++L SF L NA+F+N++T ++ +A+AHVTGLVARAS A G ++Y + F+ GS G V+ ETFYLGR+YGRAL IA ++G AL+ + D ++I++CA A GLQN LTSK+SGN +RTTH+TGA+TDLGIA+GH+LKGR+G+ WKVKLH A+LGF VGG++G Y RF +ALLFN+ I T L ++H L+I+ +G+S V +S TD+++
Sbjct: 26 NLESLRTSGSILSPVKPASIRRLRLVSKRAIQDRDDFHILLFGSFCLCFNASFVNLVTFSSYLKLATAHVTGLVARASQTIADGAWQLVYLPISVFLCFLVGSVVGGYTVSHETFYLGRSYGRALLTIALLQGSALVVNKVHVDEGHVQHYYIYVCAVAMGLQNSLTSKYSGNTLRTTHVTGATTDLGIAIGHLLKGRRGDLWKVKLHSTAILGFLVGGVMGRLAYLRFEETALLFNVTIMTVLGLSHLLWISRRKGLSLWKVFKSTTDLKV 297
BLAST of EWM23918.1 vs. NCBI_GenBank
Match: gi|585105557|gb|EWM24177.1| (Protein of unknown function DUF1275 [Nannochloropsis gaditana]) HSP 1 Score: 143.28 bits (360), Expect = 6.354e-35 Identity = 66/131 (50.38%), Postives = 90/131 (68.70%), Query Frame = 0
Query: 102 ILTASFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRMDVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALFLIAAVEGIALLTEDSYPDSIFFIWLCAYACGLQNGLTSKFSGNA 232
+L S LTINA +IN ITL+ + + SAHVTG+VARAS L A + Y + + FV+G+C G++++ ETFYLGRNY RALFL AA++G+AL+ E + S++FI+ C A GLQN LTSK+ G A
Sbjct: 186 VLFGSLTLTINAGYINSITLHNLHGIPSAHVTGIVARASNLFAEADWSRMSLYVVAYCCFVSGACMGGLLISHETFYLGRNYARALFLTAAIQGVALVIESHWDHSVYFIYACCLAMGLQNSLTSKYRGGA 316
BLAST of EWM23918.1 vs. NCBI_GenBank
Match: gi|1085765022|emb|SDR66005.1| (Uncharacterized membrane protein YoaK, UPF0700 family [Opitutus sp. GAS368]) HSP 1 Score: 116.316 bits (290), Expect = 5.037e-26 Identity = 77/225 (34.22%), Postives = 112/225 (49.78%), Query Frame = 0
Query: 102 ILTASFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRMDVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALFLIAAVEGIALLTEDSYPDSIFFI--------WLCAYACGLQNGLTSKFSGNAVRTTHLTGASTDLGIAMGHILKGRQGEWWKVKLHGVAVLGFFVGGILGFFTYRRFRHSALLFNIGITTTLAVAHTLYIAYHEGISP 318
+ L I A IN + V A +H++G V G V A+F G SG +++Q LGR YG AL ++E AL +++F+ +L A ACGLQN + S +SG+ +RTTH+TG TDLGIA GH L+G +W++ +L+GV +LGFF GG+ G Y R+ + LLF ++ V +T Y Y +P
Sbjct: 11 VYLGGLALAITAGVINAVGFLGVHHQALSHMSGTVTLLGMELGRGNYAVALHALAILAAFFLGCLVSGALISQGRLRLGRRYGVAL----SLESTALFL------AVYFLRRGANAGDYLAAMACGLQNAMVSSYSGSTMRTTHMTGMVTDLGIACGHFLRGATVDWFRFRLYGVLLLGFFAGGMTGALGYERYGYDTLLFPAILSGMTGVGYTAYKHYERHHAP 225
BLAST of EWM23918.1 vs. NCBI_GenBank
Match: gi|1183424201|gb|ORY48517.1| (DUF1275-domain-containing protein [Rhizoclosmatium globosum]) HSP 1 Score: 114.775 bits (286), Expect = 1.544e-24 Identity = 69/209 (33.01%), Postives = 111/209 (53.11%), Query Frame = 0
Query: 99 FKVILTASFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRMDVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALFLIAAVEGIALLTEDSYPDSIFFIWLCAYACGLQNGLTSKFSGNAVRTTHLTGASTDLGIAMGHILK-GRQGEWWKVKLHGVAVLGFFVGGILGFFTYRRFRHSALLFNIGITTTLAVAH 306
F I+ + +L+ NA FIN++TL V ++ +HVTG V+R + G + SF+ G+ SG +V F LGR+YG AL L + + ++ ++ + I W A+ACGLQN + + +SG VRTTH+TG +TD+G +G + E W++ +H ++ + VGG+ G Y +LLF +T AV +
Sbjct: 9 FNTIVFGACILSANAGFINVVTLAGVFSVTVSHVTGNVSRVAISIFQGDLTTAALVTSILFSFMFGAFISGYMVGDHKFVLGRSYGYALLLESVMLFMSYISLKG--ELIVGEWCAAFACGLQNAMATSYSGLVVRTTHMTGIATDIGNILGQACRQDSHAEVWRLYVHVPIMISYMVGGVFGQLAYYFLHEQSLLFPCFLTGITAVTY 215
BLAST of EWM23918.1 vs. NCBI_GenBank
Match: gi|499423765|ref|WP_011111229.1| (DUF1275 family protein [Nitrosomonas europaea] >gi|30180212|emb|CAD84514.1| possible transmembrane protein [Nitrosomonas europaea ATCC 19718] >gi|1000279451|gb|KXK41404.1| transmembrane protein [Nitrosomonas europaea] >gi|1088778362|emb|SDW04338.1| Uncharacterized membrane protein YoaK, UPF0700 family [Nitrosomonas europaea] >gi|1094286235|emb|SES68134.1| Uncharacterized membrane protein YoaK, UPF0700 family [Nitrosomonas europaea] >gi|1152117898|emb|SJZ31064.1| Uncharacterized membrane protein YoaK, UPF0700 family [Nitrosomonas europaea]) HSP 1 Score: 108.997 bits (271), Expect = 1.748e-23 Identity = 70/206 (33.98%), Postives = 112/206 (54.37%), Query Frame = 0
Query: 105 ASFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRMDVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALFLIAAVEGIA-LLTEDSYPDSIFFIWLCAYACGLQNGLTSKFSGNAVRTTHLTGASTDLGIAMGHILKGRQGEWWKVKLHGVAVLGFFVGGILGFFTYRRFRHSALLFNIGITTTLAVAHTLY 309
F+L+ NA ++N I L + A +H+TG+ S A M + L A F+ G+ SG I+ LGRNY AL + + GI+ LL P +F + ACGLQN +TS +SG VRTTH++G TDLG+A+G ++G+ + ++ L+ + ++GF GG+ G + ++R SA+L +TT + + L+
Sbjct: 12 GGFLLSFNAGYVNAIGLLGFEHQAVSHLTGISTFLSLELANHNMQAVVHLLLVMAGFIIGAAYSGFIIGNVALKLGRNYSLALITESFLLGISMLLLNYGSPVGHYF---ASAACGLQNAMTSTYSGAVVRTTHVSGLFTDLGVALGLRVRGQPADTRRIVLYLILIIGFISGGVAGAVCFGQYRFSAILVPCIVTTLIGAGYWLF 214
BLAST of EWM23918.1 vs. NCBI_GenBank
Match: gi|1083606508|gb|OGG99096.1| (hypothetical protein A2557_09895 [Candidatus Lambdaproteobacteria bacterium RIFOXYD2_FULL_56_26] >gi|1083608970|gb|OGH01479.1| hypothetical protein A2426_08680 [Candidatus Lambdaproteobacteria bacterium RIFOXYC1_FULL_56_13] >gi|1083614763|gb|OGH07108.1| hypothetical protein A2600_00625 [Candidatus Lambdaproteobacteria bacterium RIFOXYD1_FULL_56_27]) HSP 1 Score: 108.227 bits (269), Expect = 2.738e-23 Identity = 74/205 (36.10%), Postives = 113/205 (55.12%), Query Frame = 0
Query: 106 SFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRMDVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALF----LIAAVEGIALLTEDSYPDSIFFIWLCAYACGLQNGLTSKFSGNAVRTTHLTGASTDLGIAMGHILKGRQGEWWKVKLHGVAVLGFFVGGILGFFTYRRFRHSALLFNIGITTTLAVAH 306
F L+ NA IN++++ M +HVTG V+ S G +V + Y LT A F+ G+ TSG+ V F + YG L +I A + LL D + I+ ++ACG+QNGL + +S +RTTHLTG TD+G+ +G +K R+ EW +++LH + GFF GG+LG + F ALLF+ +T + +A+
Sbjct: 14 GFSLSFNAGMINLLSIMQPLHMGVSHVTGTVSHLSLQLVLGGQEVQF-YLLTLAFFLLGAFTSGLAVGGGLFEPHKRYGYVLIGESVVILAAHRVFLL------DPLAGIYPLSFACGVQNGLFTAYSKVVIRTTHLTGVLTDIGLELGRGVKNREFEWSRIELHLSLLAGFFTGGLLGAVGWVWFELDALLFSSLMTAGMGLAY 211
BLAST of EWM23918.1 vs. NCBI_GenBank
Match: gi|656243716|ref|WP_029190346.1| (DUF1275 family protein [Verrucomicrobium spinosum]) HSP 1 Score: 107.457 bits (267), Expect = 4.812e-23 Identity = 66/206 (32.04%), Postives = 112/206 (54.37%), Query Frame = 0
Query: 104 TASFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRMDVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALFLIAAVEGIALLTEDSYPDSIFFIWLCAYACGLQNGLTSKFSGNAVRTTHLTGASTDLGIAMGHILKGRQGEWWKVKLHGVAVLGFFVGGILGFFTYRRFRHSALLFNIGITTTLAVAHTLY 309
T ++ L + A +N++ + + A H+TG + + A GR+ A SF+ G+ SG+I+ T LGR YG AL + A + A+ ++ D+ ++ CA CGLQN + + +SG+ +RTTHL+G TDLGI +GH ++G + ++++ + + GFF GGI G + R+ + AL F +T + + LY
Sbjct: 11 TGAWALAMVAGMVNVVGFLSFEHQAVTHLTGTTSMLAAAIAEGRLSGALHLAAVAGSFLLGAVLSGMIIQDSTLKLGRRYGVALVMEALMLAAAVPLLQAHHDAGAYLASCA--CGLQNAMATTYSGSVIRTTHLSGMFTDLGIFLGHAVRGLPVDGRRLRIALLIITGFFCGGITGALAFHRWSYPALYFPATMTGAAGLGYGLY 214
BLAST of EWM23918.1 vs. NCBI_GenBank
Match: gi|518675631|ref|WP_019837324.1| (DUF1275 family protein [Acinetobacter sp. MDS7A]) HSP 1 Score: 107.457 bits (267), Expect = 4.977e-23 Identity = 70/210 (33.33%), Postives = 115/210 (54.76%), Query Frame = 0
Query: 106 SFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRMDVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALFLIAAVEGIALLTEDSYPDSIFFIWLCAYACGLQNGLTSKFSGNAVRTTHLTGASTDLGIAMGHILKGRQGEWWKVKLHGVAVLGFFVGGILGFFTYRRFRHSALLFNIGITTTLAVAH-TLYIAYHE 314
+F L +NA IN++ L TV + +H+TG V+ + + + + L +V GS SGVI+ F LGR YG + L+A I + +P +W + A G+QN + S + G +RTTHL+G TDLG+A+G+ ++G Q E ++ LH + +LGFFVGG+L Y F+ ++ L G++ +L++ + +Y Y
Sbjct: 14 AFFLAVNAGIINVLGLVTVLHQSVSHMTGNVSILAMALINWKPEAMIFLFLVILCYVIGSFYSGVILGNSNFRLGRRYGLPMSLVALFILICWVLLPYFPRYAL-LW-ASVAMGIQNAMVSYYKGTIIRTTHLSGVLTDLGLALGYRVRGLQVEKKRIVLHLLILLGFFVGGLLAAAIYPTFKLNSFLVPAGLSLSLSLVYWIIYFRYRH 221
BLAST of EWM23918.1 vs. NCBI_GenBank
Match: gi|511824048|ref|WP_016402881.1| (DUF1275 family protein [Agarivorans albus] >gi|511671018|dbj|GAD03114.1| conserved hypothetical membrane protein [Agarivorans albus MKT 106]) HSP 1 Score: 107.071 bits (266), Expect = 6.220e-23 Identity = 79/220 (35.91%), Postives = 117/220 (53.18%), Query Frame = 0
Query: 105 ASFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRM-----DVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALFLIAAVEGIALLTEDSY---PDSIFFIWLCAYACGLQNGLTSKFSGNAVRTTHLTGASTDLGIAMGHILKGRQGEWWKVKLHGVAVLGFFVGGILGFFTYRRFRHSALLFNIGITTTLAVAHTLYIAYHEGI 316
+F+L +NA FIN + L + + +H++G + L TG M D+LY + + + SFV G+ SG + E LGRNY L L A L SY D + I+L + ACGLQN L + +SG VRTTH+TG TDLGI +G +L+G + + L + VLGF +GG LG + +LL G+ LA+ +++Y A H+ +
Sbjct: 12 GTFLLALNAGFINAVGLLGFKHQSVSHLSG----TATLLGTGAMSAGFNDLLYLFGVLF-SFVMGAAISGYFLRGEALKLGRNYSALLCLEAT-----FLCGASYLLIGDFSYGIYLASAACGLQNALATTYSGAVVRTTHVTGIFTDLGIMLGAVLRGGPFDKRRALLFSLIVLGFILGGTLGALGFANLAFYSLLIPAGVCLFLALFYSVYKAKHKAV 221 The following BLAST results are available for this feature:
BLAST of EWM23918.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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