EWM23918.1, cds6750 (CDS) Nannochloropsis gaditana

Overview
NameEWM23918.1
Unique Namecds6750
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:451085..451184 -
Alignment locationCM002469.1:450638..450995 -
Alignment locationCM002469.1:450437..450515 -
Alignment locationCM002469.1:449272..450327 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23918.1
ProductProtein of unknown function DUF1275
Orig transcript idgnl|cribi|Naga_100082g9.9350.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:451085..451184 -
CM002469.1supercontigCM002469.1:450638..450995 -
CM002469.1supercontigCM002469.1:450437..450515 -
CM002469.1supercontigCM002469.1:449272..450327 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR010699DUF1275
Homology
BLAST of EWM23918.1 vs. NCBI_GenBank
Match: gi|585105203|gb|EWM23918.1| (Protein of unknown function DUF1275 [Nannochloropsis gaditana])

HSP 1 Score: 1100.5 bits (2845), Expect = 0.000e+0
Identity = 530/530 (100.00%), Postives = 530/530 (100.00%), Query Frame = 0
Query:    1 MSSPGCVLPGFDIALITLSPSSTALAVKDRHRRWEKEEEREQENEAPPSPAVVQQKQTEPQNPPSNINDVPCPASKVNPPQGLQRQKSSYKNPGERPYFKVILTASFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRMDVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALFLIAAVEGIALLTEDSYPDSIFFIWLCAYACGLQNGLTSKFSGNAVRTTHLTGASTDLGIAMGHILKGRQGEWWKVKLHGVAVLGFFVGGILGFFTYRRFRHSALLFNIGITTTLAVAHTLYIAYHEGISPITVLESKTDIRMHKRRIVVAGDGKRQFSFYARPSPSGSALEALTLRTREKHLAAARPTSGKVVASPASTARHQKRHFPKNRAGEDADDHVALLISQETMNSSSAEGGTDENHRAHAMESAASPPVASQDDVWVDMVAMGQLAPSSSYEEANGPAVDMESVSSHLSHRSLQQYLDEEDLVPKPEDEGPLPEFAEDDFAAVEAEASICGEIDEF 530
            MSSPGCVLPGFDIALITLSPSSTALAVKDRHRRWEKEEEREQENEAPPSPAVVQQKQTEPQNPPSNINDVPCPASKVNPPQGLQRQKSSYKNPGERPYFKVILTASFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRMDVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALFLIAAVEGIALLTEDSYPDSIFFIWLCAYACGLQNGLTSKFSGNAVRTTHLTGASTDLGIAMGHILKGRQGEWWKVKLHGVAVLGFFVGGILGFFTYRRFRHSALLFNIGITTTLAVAHTLYIAYHEGISPITVLESKTDIRMHKRRIVVAGDGKRQFSFYARPSPSGSALEALTLRTREKHLAAARPTSGKVVASPASTARHQKRHFPKNRAGEDADDHVALLISQETMNSSSAEGGTDENHRAHAMESAASPPVASQDDVWVDMVAMGQLAPSSSYEEANGPAVDMESVSSHLSHRSLQQYLDEEDLVPKPEDEGPLPEFAEDDFAAVEAEASICGEIDEF
Sbjct:    1 MSSPGCVLPGFDIALITLSPSSTALAVKDRHRRWEKEEEREQENEAPPSPAVVQQKQTEPQNPPSNINDVPCPASKVNPPQGLQRQKSSYKNPGERPYFKVILTASFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRMDVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALFLIAAVEGIALLTEDSYPDSIFFIWLCAYACGLQNGLTSKFSGNAVRTTHLTGASTDLGIAMGHILKGRQGEWWKVKLHGVAVLGFFVGGILGFFTYRRFRHSALLFNIGITTTLAVAHTLYIAYHEGISPITVLESKTDIRMHKRRIVVAGDGKRQFSFYARPSPSGSALEALTLRTREKHLAAARPTSGKVVASPASTARHQKRHFPKNRAGEDADDHVALLISQETMNSSSAEGGTDENHRAHAMESAASPPVASQDDVWVDMVAMGQLAPSSSYEEANGPAVDMESVSSHLSHRSLQQYLDEEDLVPKPEDEGPLPEFAEDDFAAVEAEASICGEIDEF 530          
BLAST of EWM23918.1 vs. NCBI_GenBank
Match: gi|585106149|gb|EWM24629.1| (hypothetical protein Naga_100117g18 [Nannochloropsis gaditana])

HSP 1 Score: 249.595 bits (636), Expect = 2.508e-72
Identity = 124/272 (45.59%), Postives = 180/272 (66.18%), Query Frame = 0
Query:   66 NINDVPCPASKVNP--PQGLQRQK-SSYKNPGERPYFKVILTASFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRMDVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALFLIAAVEGIALLTEDSYPD----SIFFIWLCAYACGLQNGLTSKFSGNAVRTTHLTGASTDLGIAMGHILKGRQGEWWKVKLHGVAVLGFFVGGILGFFTYRRFRHSALLFNIGITTTLAVAHTLYIAYHEGISPITVLESKTDIRM 330
            N+  +    S ++P  P  ++R +  S +   +R  F ++L  SF L  NA+F+N++T ++   +A+AHVTGLVARAS   A G   ++Y     +  F+ GS   G  V+ ETFYLGR+YGRAL  IA ++G AL+    + D      ++I++CA A GLQN LTSK+SGN +RTTH+TGA+TDLGIA+GH+LKGR+G+ WKVKLH  A+LGF VGG++G   Y RF  +ALLFN+ I T L ++H L+I+  +G+S   V +S TD+++
Sbjct:   26 NLESLRTSGSILSPVKPASIRRLRLVSKRAIQDRDDFHILLFGSFCLCFNASFVNLVTFSSYLKLATAHVTGLVARASQTIADGAWQLVYLPISVFLCFLVGSVVGGYTVSHETFYLGRSYGRALLTIALLQGSALVVNKVHVDEGHVQHYYIYVCAVAMGLQNSLTSKYSGNTLRTTHVTGATTDLGIAIGHLLKGRRGDLWKVKLHSTAILGFLVGGVMGRLAYLRFEETALLFNVTIMTVLGLSHLLWISRRKGLSLWKVFKSTTDLKV 297          
BLAST of EWM23918.1 vs. NCBI_GenBank
Match: gi|585105557|gb|EWM24177.1| (Protein of unknown function DUF1275 [Nannochloropsis gaditana])

HSP 1 Score: 143.28 bits (360), Expect = 6.354e-35
Identity = 66/131 (50.38%), Postives = 90/131 (68.70%), Query Frame = 0
Query:  102 ILTASFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRMDVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALFLIAAVEGIALLTEDSYPDSIFFIWLCAYACGLQNGLTSKFSGNA 232
            +L  S  LTINA +IN ITL+ +  + SAHVTG+VARAS L A      +  Y + +  FV+G+C  G++++ ETFYLGRNY RALFL AA++G+AL+ E  +  S++FI+ C  A GLQN LTSK+ G A
Sbjct:  186 VLFGSLTLTINAGYINSITLHNLHGIPSAHVTGIVARASNLFAEADWSRMSLYVVAYCCFVSGACMGGLLISHETFYLGRNYARALFLTAAIQGVALVIESHWDHSVYFIYACCLAMGLQNSLTSKYRGGA 316          
BLAST of EWM23918.1 vs. NCBI_GenBank
Match: gi|1085765022|emb|SDR66005.1| (Uncharacterized membrane protein YoaK, UPF0700 family [Opitutus sp. GAS368])

HSP 1 Score: 116.316 bits (290), Expect = 5.037e-26
Identity = 77/225 (34.22%), Postives = 112/225 (49.78%), Query Frame = 0
Query:  102 ILTASFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRMDVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALFLIAAVEGIALLTEDSYPDSIFFI--------WLCAYACGLQNGLTSKFSGNAVRTTHLTGASTDLGIAMGHILKGRQGEWWKVKLHGVAVLGFFVGGILGFFTYRRFRHSALLFNIGITTTLAVAHTLYIAYHEGISP 318
            +      L I A  IN +    V   A +H++G V         G   V        A+F  G   SG +++Q    LGR YG AL    ++E  AL        +++F+        +L A ACGLQN + S +SG+ +RTTH+TG  TDLGIA GH L+G   +W++ +L+GV +LGFF GG+ G   Y R+ +  LLF   ++    V +T Y  Y    +P
Sbjct:   11 VYLGGLALAITAGVINAVGFLGVHHQALSHMSGTVTLLGMELGRGNYAVALHALAILAAFFLGCLVSGALISQGRLRLGRRYGVAL----SLESTALFL------AVYFLRRGANAGDYLAAMACGLQNAMVSSYSGSTMRTTHMTGMVTDLGIACGHFLRGATVDWFRFRLYGVLLLGFFAGGMTGALGYERYGYDTLLFPAILSGMTGVGYTAYKHYERHHAP 225          
BLAST of EWM23918.1 vs. NCBI_GenBank
Match: gi|1183424201|gb|ORY48517.1| (DUF1275-domain-containing protein [Rhizoclosmatium globosum])

HSP 1 Score: 114.775 bits (286), Expect = 1.544e-24
Identity = 69/209 (33.01%), Postives = 111/209 (53.11%), Query Frame = 0
Query:   99 FKVILTASFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRMDVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALFLIAAVEGIALLTEDSYPDSIFFIWLCAYACGLQNGLTSKFSGNAVRTTHLTGASTDLGIAMGHILK-GRQGEWWKVKLHGVAVLGFFVGGILGFFTYRRFRHSALLFNIGITTTLAVAH 306
            F  I+  + +L+ NA FIN++TL  V ++  +HVTG V+R +     G +           SF+ G+  SG +V    F LGR+YG AL L + +  ++ ++     + I   W  A+ACGLQN + + +SG  VRTTH+TG +TD+G  +G   +     E W++ +H   ++ + VGG+ G   Y      +LLF   +T   AV +
Sbjct:    9 FNTIVFGACILSANAGFINVVTLAGVFSVTVSHVTGNVSRVAISIFQGDLTTAALVTSILFSFMFGAFISGYMVGDHKFVLGRSYGYALLLESVMLFMSYISLKG--ELIVGEWCAAFACGLQNAMATSYSGLVVRTTHMTGIATDIGNILGQACRQDSHAEVWRLYVHVPIMISYMVGGVFGQLAYYFLHEQSLLFPCFLTGITAVTY 215          
BLAST of EWM23918.1 vs. NCBI_GenBank
Match: gi|499423765|ref|WP_011111229.1| (DUF1275 family protein [Nitrosomonas europaea] >gi|30180212|emb|CAD84514.1| possible transmembrane protein [Nitrosomonas europaea ATCC 19718] >gi|1000279451|gb|KXK41404.1| transmembrane protein [Nitrosomonas europaea] >gi|1088778362|emb|SDW04338.1| Uncharacterized membrane protein YoaK, UPF0700 family [Nitrosomonas europaea] >gi|1094286235|emb|SES68134.1| Uncharacterized membrane protein YoaK, UPF0700 family [Nitrosomonas europaea] >gi|1152117898|emb|SJZ31064.1| Uncharacterized membrane protein YoaK, UPF0700 family [Nitrosomonas europaea])

HSP 1 Score: 108.997 bits (271), Expect = 1.748e-23
Identity = 70/206 (33.98%), Postives = 112/206 (54.37%), Query Frame = 0
Query:  105 ASFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRMDVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALFLIAAVEGIA-LLTEDSYPDSIFFIWLCAYACGLQNGLTSKFSGNAVRTTHLTGASTDLGIAMGHILKGRQGEWWKVKLHGVAVLGFFVGGILGFFTYRRFRHSALLFNIGITTTLAVAHTLY 309
              F+L+ NA ++N I L   +  A +H+TG+    S   A   M  +    L  A F+ G+  SG I+      LGRNY  AL   + + GI+ LL     P   +F    + ACGLQN +TS +SG  VRTTH++G  TDLG+A+G  ++G+  +  ++ L+ + ++GF  GG+ G   + ++R SA+L    +TT +   + L+
Sbjct:   12 GGFLLSFNAGYVNAIGLLGFEHQAVSHLTGISTFLSLELANHNMQAVVHLLLVMAGFIIGAAYSGFIIGNVALKLGRNYSLALITESFLLGISMLLLNYGSPVGHYF---ASAACGLQNAMTSTYSGAVVRTTHVSGLFTDLGVALGLRVRGQPADTRRIVLYLILIIGFISGGVAGAVCFGQYRFSAILVPCIVTTLIGAGYWLF 214          
BLAST of EWM23918.1 vs. NCBI_GenBank
Match: gi|1083606508|gb|OGG99096.1| (hypothetical protein A2557_09895 [Candidatus Lambdaproteobacteria bacterium RIFOXYD2_FULL_56_26] >gi|1083608970|gb|OGH01479.1| hypothetical protein A2426_08680 [Candidatus Lambdaproteobacteria bacterium RIFOXYC1_FULL_56_13] >gi|1083614763|gb|OGH07108.1| hypothetical protein A2600_00625 [Candidatus Lambdaproteobacteria bacterium RIFOXYD1_FULL_56_27])

HSP 1 Score: 108.227 bits (269), Expect = 2.738e-23
Identity = 74/205 (36.10%), Postives = 113/205 (55.12%), Query Frame = 0
Query:  106 SFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRMDVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALF----LIAAVEGIALLTEDSYPDSIFFIWLCAYACGLQNGLTSKFSGNAVRTTHLTGASTDLGIAMGHILKGRQGEWWKVKLHGVAVLGFFVGGILGFFTYRRFRHSALLFNIGITTTLAVAH 306
             F L+ NA  IN++++     M  +HVTG V+  S     G  +V + Y LT A F+ G+ TSG+ V    F   + YG  L     +I A   + LL      D +  I+  ++ACG+QNGL + +S   +RTTHLTG  TD+G+ +G  +K R+ EW +++LH   + GFF GG+LG   +  F   ALLF+  +T  + +A+
Sbjct:   14 GFSLSFNAGMINLLSIMQPLHMGVSHVTGTVSHLSLQLVLGGQEVQF-YLLTLAFFLLGAFTSGLAVGGGLFEPHKRYGYVLIGESVVILAAHRVFLL------DPLAGIYPLSFACGVQNGLFTAYSKVVIRTTHLTGVLTDIGLELGRGVKNREFEWSRIELHLSLLAGFFTGGLLGAVGWVWFELDALLFSSLMTAGMGLAY 211          
BLAST of EWM23918.1 vs. NCBI_GenBank
Match: gi|656243716|ref|WP_029190346.1| (DUF1275 family protein [Verrucomicrobium spinosum])

HSP 1 Score: 107.457 bits (267), Expect = 4.812e-23
Identity = 66/206 (32.04%), Postives = 112/206 (54.37%), Query Frame = 0
Query:  104 TASFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRMDVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALFLIAAVEGIALLTEDSYPDSIFFIWLCAYACGLQNGLTSKFSGNAVRTTHLTGASTDLGIAMGHILKGRQGEWWKVKLHGVAVLGFFVGGILGFFTYRRFRHSALLFNIGITTTLAVAHTLY 309
            T ++ L + A  +N++   + +  A  H+TG  +  +   A GR+      A    SF+ G+  SG+I+   T  LGR YG AL + A +   A+    ++ D+  ++  CA  CGLQN + + +SG+ +RTTHL+G  TDLGI +GH ++G   +  ++++  + + GFF GGI G   + R+ + AL F   +T    + + LY
Sbjct:   11 TGAWALAMVAGMVNVVGFLSFEHQAVTHLTGTTSMLAAAIAEGRLSGALHLAAVAGSFLLGAVLSGMIIQDSTLKLGRRYGVALVMEALMLAAAVPLLQAHHDAGAYLASCA--CGLQNAMATTYSGSVIRTTHLSGMFTDLGIFLGHAVRGLPVDGRRLRIALLIITGFFCGGITGALAFHRWSYPALYFPATMTGAAGLGYGLY 214          
BLAST of EWM23918.1 vs. NCBI_GenBank
Match: gi|518675631|ref|WP_019837324.1| (DUF1275 family protein [Acinetobacter sp. MDS7A])

HSP 1 Score: 107.457 bits (267), Expect = 4.977e-23
Identity = 70/210 (33.33%), Postives = 115/210 (54.76%), Query Frame = 0
Query:  106 SFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRMDVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALFLIAAVEGIALLTEDSYPDSIFFIWLCAYACGLQNGLTSKFSGNAVRTTHLTGASTDLGIAMGHILKGRQGEWWKVKLHGVAVLGFFVGGILGFFTYRRFRHSALLFNIGITTTLAVAH-TLYIAYHE 314
            +F L +NA  IN++ L TV   + +H+TG V+  +      + + +    L    +V GS  SGVI+    F LGR YG  + L+A    I  +    +P     +W  + A G+QN + S + G  +RTTHL+G  TDLG+A+G+ ++G Q E  ++ LH + +LGFFVGG+L    Y  F+ ++ L   G++ +L++ +  +Y  Y  
Sbjct:   14 AFFLAVNAGIINVLGLVTVLHQSVSHMTGNVSILAMALINWKPEAMIFLFLVILCYVIGSFYSGVILGNSNFRLGRRYGLPMSLVALFILICWVLLPYFPRYAL-LW-ASVAMGIQNAMVSYYKGTIIRTTHLSGVLTDLGLALGYRVRGLQVEKKRIVLHLLILLGFFVGGLLAAAIYPTFKLNSFLVPAGLSLSLSLVYWIIYFRYRH 221          
BLAST of EWM23918.1 vs. NCBI_GenBank
Match: gi|511824048|ref|WP_016402881.1| (DUF1275 family protein [Agarivorans albus] >gi|511671018|dbj|GAD03114.1| conserved hypothetical membrane protein [Agarivorans albus MKT 106])

HSP 1 Score: 107.071 bits (266), Expect = 6.220e-23
Identity = 79/220 (35.91%), Postives = 117/220 (53.18%), Query Frame = 0
Query:  105 ASFVLTINAAFINIITLNTVQAMASAHVTGLVARASYLAATGRM-----DVLYQYALTWASFVAGSCTSGVIVAQETFYLGRNYGRALFLIAAVEGIALLTEDSY---PDSIFFIWLCAYACGLQNGLTSKFSGNAVRTTHLTGASTDLGIAMGHILKGRQGEWWKVKLHGVAVLGFFVGGILGFFTYRRFRHSALLFNIGITTTLAVAHTLYIAYHEGI 316
             +F+L +NA FIN + L   +  + +H++G     + L  TG M     D+LY + + + SFV G+  SG  +  E   LGRNY   L L A       L   SY    D  + I+L + ACGLQN L + +SG  VRTTH+TG  TDLGI +G +L+G   +  +  L  + VLGF +GG LG   +      +LL   G+   LA+ +++Y A H+ +
Sbjct:   12 GTFLLALNAGFINAVGLLGFKHQSVSHLSG----TATLLGTGAMSAGFNDLLYLFGVLF-SFVMGAAISGYFLRGEALKLGRNYSALLCLEAT-----FLCGASYLLIGDFSYGIYLASAACGLQNALATTYSGAVVRTTHVTGIFTDLGIMLGAVLRGGPFDKRRALLFSLIVLGFILGGTLGALGFANLAFYSLLIPAGVCLFLALFYSVYKAKHKAV 221          
The following BLAST results are available for this feature:
BLAST of EWM23918.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105203|gb|EWM23918.1|0.000e+0100.00Protein of unknown function DUF1275 [Nannochlorops... [more]
gi|585106149|gb|EWM24629.1|2.508e-7245.59hypothetical protein Naga_100117g18 [Nannochlorops... [more]
gi|585105557|gb|EWM24177.1|6.354e-3550.38Protein of unknown function DUF1275 [Nannochlorops... [more]
gi|1085765022|emb|SDR66005.1|5.037e-2634.22Uncharacterized membrane protein YoaK, UPF0700 fam... [more]
gi|1183424201|gb|ORY48517.1|1.544e-2433.01DUF1275-domain-containing protein [Rhizoclosmatium... [more]
gi|499423765|ref|WP_011111229.1|1.748e-2333.98DUF1275 family protein [Nitrosomonas europaea] >gi... [more]
gi|1083606508|gb|OGG99096.1|2.738e-2336.10hypothetical protein A2557_09895 [Candidatus Lambd... [more]
gi|656243716|ref|WP_029190346.1|4.812e-2332.04DUF1275 family protein [Verrucomicrobium spinosum][more]
gi|518675631|ref|WP_019837324.1|4.977e-2333.33DUF1275 family protein [Acinetobacter sp. MDS7A][more]
gi|511824048|ref|WP_016402881.1|6.220e-2335.91DUF1275 family protein [Agarivorans albus] >gi|511... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6766rna6766Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications