EWM23935.1, cds6749 (CDS) Nannochloropsis gaditana

Overview
NameEWM23935.1
Unique Namecds6749
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:448101..448538 +
Alignment locationCM002469.1:448624..448767 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23935.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100082g10.9367.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:448101..448538 +
CM002469.1supercontigCM002469.1:448624..448767 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM23935.1 vs. NCBI_GenBank
Match: gi|585105220|gb|EWM23935.1| (hypothetical protein Naga_100082g10 [Nannochloropsis gaditana])

HSP 1 Score: 386.341 bits (991), Expect = 9.260e-136
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
Query:    1 MGQRVKRFRQAQRERLRTQAAGQRSECRGRNAEVRVQRSECRGQSAEVTVQRSHCTGSEGRGQRAEAEMQRSEWRGQSPQVTVETSEGPGPARRGSRPTRRRKDWPKISEITWGPYYSESVFLGYSAAGRAEEKGWRMGSQNLCWENLRCRSLAGKTSGGRSDPSLLIWMGQTLRIQRASLDEKSAGADTHSN 193
            MGQRVKRFRQAQRERLRTQAAGQRSECRGRNAEVRVQRSECRGQSAEVTVQRSHCTGSEGRGQRAEAEMQRSEWRGQSPQVTVETSEGPGPARRGSRPTRRRKDWPKISEITWGPYYSESVFLGYSAAGRAEEKGWRMGSQNLCWENLRCRSLAGKTSGGRSDPSLLIWMGQTLRIQRASLDEKSAGADTHSN
Sbjct:    1 MGQRVKRFRQAQRERLRTQAAGQRSECRGRNAEVRVQRSECRGQSAEVTVQRSHCTGSEGRGQRAEAEMQRSEWRGQSPQVTVETSEGPGPARRGSRPTRRRKDWPKISEITWGPYYSESVFLGYSAAGRAEEKGWRMGSQNLCWENLRCRSLAGKTSGGRSDPSLLIWMGQTLRIQRASLDEKSAGADTHSN 193          
BLAST of EWM23935.1 vs. NCBI_GenBank
Match: gi|1025651032|gb|OAA38573.1| (phosphatidylinositol 4-kinase PIK1a [Metarhizium rileyi RCEF 4871])

HSP 1 Score: 58.9214 bits (141), Expect = 9.241e-7
Identity = 42/77 (54.55%), Postives = 46/77 (59.74%), Query Frame = 0
Query:   23 QRSECRGRNAEVRVQRSECRGQSAEVTVQRSHCTG---------SEGRGQRAEAEMQRSEWRGQSPQVTVETSEGPG 90
            QRSE RG+ AEVR QRSE RGQ AEV  QRS   G         SE RGQ+AE   QRSE RGQ  +V  + SE  G
Sbjct:  972 QRSESRGQKAEVRKQRSESRGQKAEVRKQRSESRGQKAEVRKQRSESRGQKAEVRKQRSESRGQKAEVRKQRSESRG 1048          

HSP 2 Score: 58.9214 bits (141), Expect = 9.241e-7
Identity = 42/77 (54.55%), Postives = 46/77 (59.74%), Query Frame = 0
Query:   23 QRSECRGRNAEVRVQRSECRGQSAEVTVQRSHCTG---------SEGRGQRAEAEMQRSEWRGQSPQVTVETSEGPG 90
            QRSE RG+ AEVR QRSE RGQ AEV  QRS   G         SE RGQ+AE   QRSE RGQ  +V  + SE  G
Sbjct: 1000 QRSESRGQKAEVRKQRSESRGQKAEVRKQRSESRGQKAEVRKQRSESRGQKAEVRKQRSESRGQKAEVRKQRSESRG 1076          

HSP 3 Score: 58.9214 bits (141), Expect = 9.241e-7
Identity = 42/77 (54.55%), Postives = 46/77 (59.74%), Query Frame = 0
Query:   23 QRSECRGRNAEVRVQRSECRGQSAEVTVQRSHCTG---------SEGRGQRAEAEMQRSEWRGQSPQVTVETSEGPG 90
            QRSE RG+ AEVR QRSE RGQ AEV  QRS   G         SE RGQ+AE   QRSE RGQ  +V  + SE  G
Sbjct: 1042 QRSESRGQKAEVRKQRSESRGQKAEVRKQRSESRGQKAEVRKQRSESRGQKAEVRKQRSESRGQKAEVRKQRSESRG 1118          

HSP 4 Score: 58.9214 bits (141), Expect = 9.241e-7
Identity = 42/77 (54.55%), Postives = 46/77 (59.74%), Query Frame = 0
Query:   23 QRSECRGRNAEVRVQRSECRGQSAEVTVQRSHCTG---------SEGRGQRAEAEMQRSEWRGQSPQVTVETSEGPG 90
            QRSE RG+ AEVR QRSE RGQ AEV  QRS   G         SE RGQ+AE   QRSE RGQ  +V  + SE  G
Sbjct: 1056 QRSESRGQKAEVRKQRSESRGQKAEVRKQRSESRGQKAEVRKQRSESRGQKAEVRKQRSESRGQKAEVRKQRSESRG 1132          
The following BLAST results are available for this feature:
BLAST of EWM23935.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105220|gb|EWM23935.1|9.260e-136100.00hypothetical protein Naga_100082g10 [Nannochlorops... [more]
gi|1025651032|gb|OAA38573.1|9.241e-754.55phosphatidylinositol 4-kinase PIK1a [Metarhizium r... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6765rna6765Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications