EWM23989.1, cds6713 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23989.1 vs. NCBI_GenBank
Match: gi|585105275|gb|EWM23989.1| (trna guanosine-2 -o-methyltransferase trm11 [Nannochloropsis gaditana]) HSP 1 Score: 1079.7 bits (2791), Expect = 0.000e+0 Identity = 522/522 (100.00%), Postives = 522/522 (100.00%), Query Frame = 0
Query: 1 MPQPQDEHHARRRGGEKLSYVLLFILLFLLPARSFQHGFHYQDLVIAFRHPSRNTKGFCTGVEKNYVLPQFEFLAALNTSQCSTFAKSLALRPFFHSSTIPFYSIRYGDDIVGPYFTKDLADVSRRCILTYGLFHLLAAGKNPSDTAASACKASNSKGYNHKKGMFSTTIPKYSLSTKLGKRWRVGVVGVSDQNEEILLSSRQKENAVNAFQPFLHGTAGLDPTLRQLDERGPPPELDFFIFIFPKCGQVLLCLRLAQGPGTGKGYTFASKPRRPRSGVLKALAAYREKATFISPTAMDPELAWVMNNMGGVRKRSRVFDPFMGSGSLLFTASLLGAEELFGSDAAQELMGGESRVNKQLIIKSFAYDKNDFSQWVDSLTSPVPVLTQADILSRQLHPLFRSGYYDSIVTDPPYNIKAKVFGKAETATDTKAATARQQTIIPVIFALIDIAASVLVPGGRLVFFLPEWTKQDIGCNKKSDANILSYMLSRTPKAFKVVFTLPQTFSPSFTRWLVCLEKSVNE 522
MPQPQDEHHARRRGGEKLSYVLLFILLFLLPARSFQHGFHYQDLVIAFRHPSRNTKGFCTGVEKNYVLPQFEFLAALNTSQCSTFAKSLALRPFFHSSTIPFYSIRYGDDIVGPYFTKDLADVSRRCILTYGLFHLLAAGKNPSDTAASACKASNSKGYNHKKGMFSTTIPKYSLSTKLGKRWRVGVVGVSDQNEEILLSSRQKENAVNAFQPFLHGTAGLDPTLRQLDERGPPPELDFFIFIFPKCGQVLLCLRLAQGPGTGKGYTFASKPRRPRSGVLKALAAYREKATFISPTAMDPELAWVMNNMGGVRKRSRVFDPFMGSGSLLFTASLLGAEELFGSDAAQELMGGESRVNKQLIIKSFAYDKNDFSQWVDSLTSPVPVLTQADILSRQLHPLFRSGYYDSIVTDPPYNIKAKVFGKAETATDTKAATARQQTIIPVIFALIDIAASVLVPGGRLVFFLPEWTKQDIGCNKKSDANILSYMLSRTPKAFKVVFTLPQTFSPSFTRWLVCLEKSVNE
Sbjct: 1 MPQPQDEHHARRRGGEKLSYVLLFILLFLLPARSFQHGFHYQDLVIAFRHPSRNTKGFCTGVEKNYVLPQFEFLAALNTSQCSTFAKSLALRPFFHSSTIPFYSIRYGDDIVGPYFTKDLADVSRRCILTYGLFHLLAAGKNPSDTAASACKASNSKGYNHKKGMFSTTIPKYSLSTKLGKRWRVGVVGVSDQNEEILLSSRQKENAVNAFQPFLHGTAGLDPTLRQLDERGPPPELDFFIFIFPKCGQVLLCLRLAQGPGTGKGYTFASKPRRPRSGVLKALAAYREKATFISPTAMDPELAWVMNNMGGVRKRSRVFDPFMGSGSLLFTASLLGAEELFGSDAAQELMGGESRVNKQLIIKSFAYDKNDFSQWVDSLTSPVPVLTQADILSRQLHPLFRSGYYDSIVTDPPYNIKAKVFGKAETATDTKAATARQQTIIPVIFALIDIAASVLVPGGRLVFFLPEWTKQDIGCNKKSDANILSYMLSRTPKAFKVVFTLPQTFSPSFTRWLVCLEKSVNE 522
BLAST of EWM23989.1 vs. NCBI_GenBank
Match: gi|298715659|emb|CBJ28185.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 153.68 bits (387), Expect = 6.410e-37 Identity = 163/555 (29.37%), Postives = 233/555 (41.98%), Query Frame = 0
Query: 45 VIAFRHPSRNTKGFCTGVEKNYVLPQFEFLAALNTSQCSTFAKSLALRPFFHSSTIPFYSIRYGDDIVGPYFTKDLADVSRRCILTYGLFHLLAAGKNPSDTAASACKASNSKGYNHKKGMFSTTIPKYSLSTKLGKRWRVGVV--GVSDQNEEILLSSRQKENAVNAFQPFLHG--------TAGLDPTLRQLDERGPPPELDF-----------FIFIFPKCGQVLLCLRLAQGPGTGKGYTFASKP--RRPRSGVLKALAAYREKATFISPTAMDPELAWVMNNMGGVRKRSRVFDPFMGSGSLLFTASLLGAEELFGSD------AAQE---LMGGESRVNKQLIIKSFAYDKNDFSQWV---DSLTSPVPVLTQADILSRQLHPLFRSGYYDSIVTDPPYNIKAKVF---------GKAETATDT--------------------------KAATARQQTIIPVIFALIDIAASVLVPGGRLVFFLPEWTKQDIGCNKKSD---ANILSYM----LSRTPKAFKVVFTLPQTF-SPSFTRWLVCLEKSVN 521
++AFR SR+T GF EK + PQ E +A+ ++ S L LR S + R D ++A+ + RC+L +GLF + G+N D A K G F L W +GV G S+ N+E Q+ A + FL D +R +++ PPP + + +C L G G G T + RRP GVL ALA R + PTA++PE+A +M N+ VR SRV DPF GS SLL A+ +GA + +GSD A++E L+GG++ + D+ DF Q +L P L AD+ + P+ R +YD+IVTDPPYNIKAKV G+ E A +A + + + VI++L+ +A S L PGGRL FFLP G + D +L M L+ P VV+T Q SP+ RWL+ LEK ++
Sbjct: 23 LVAFRGRSRHTSGFGP-YEKFELAPQ-ELIASTTQTKRSEQQDMLRLRQTDGSDVFQWVDSRMDD--------AEIAEAASRCVLLHGLFEVWGHGRNREDAIRDA----------FKSGRF--------LQHAGNASWSLGVTRYGRSNLNKE-----EQQALAGGPVETFLSSFLKGPRIELVNSDIRVRIIEDLCPPPAENLPRDVRERAEASAAARRRRENTFYICRELQLGAAVGVGGTVMATGCGRRPTRGVLGALALNRRRCR--GPTAIEPEVALIMANLAKVRPGSRVLDPFCGSCSLLLPAAHMGA-KTWGSDVSGPATASEEAGALVGGDTGAEGGV----RQADREDFEQIYQDFQALGVAAPTLVAADVGDEE-SPVRRPEFYDAIVTDPPYNIKAKVVTTSLATKTSGRHEEAGSVLPAAGIDSTAHAASEAGSEWKAGGGARAEASAKDLVGKVIWSLLALARSSLKPGGRLCFFLPL-----RGAEARLDRLPTGLLEKMSQGDLAGDPARLAVVYTTKQRMTSPNMCRWLIVLEKELD 531
BLAST of EWM23989.1 vs. NCBI_GenBank
Match: gi|1210515092|dbj|GAX26055.1| (tRNA (guanine10-N2)-methyltransferase [Fistulifera solaris]) HSP 1 Score: 95.5153 bits (236), Expect = 3.821e-17 Identity = 70/238 (29.41%), Postives = 109/238 (45.80%), Query Frame = 0
Query: 291 TFISPTAMDPELAWVMNNMGGVRKRSRVFDPFMGSGSLLFTASLLGAEELFGSDAAQELMGGESRVNKQLIIKSFAYDKNDFSQWVDSLTSPVPVLTQADILSRQLHPLFRSGYYDSIVTDPPYNIKAKVFGKAETATDTK----------AATARQQTIIPVIFALIDIAASVLVPGGRLVFFLPEWTKQDIGCNKKSDANILSYMLSRTPKAFKVVFTLPQTFSPSFTRWLVCLEK 518
T++ PT+MD EL+ +M N+G ++ + FDPF+G+GS+L + +L GA G+D ++ G S+ D+N S + P P L ++D H S YD+I+ DPPY I+A T+ K A R + V+ L+D+AA LV GGRLV+ +P + D C+ L R + ++V Q R +V +EK
Sbjct: 274 TYLGPTSMDAELSSIMTNLGHCKEGTIAFDPFVGTGSILLSCALRGA-FCIGTDIDFRILKGRSK------------DENIESNF-RQFNLPKPELIRSDNSIHHRHFRTTSPMYDAIICDPPYGIRAGARKSGSRLTNPKPVPEDQRHDHIAQTRPYPVSDVMADLLDVAARNLVLGGRLVYIIPSYADFDDECD-----------LPRH-ECLRIVHICYQPLGSELGRRMVTMEK 485
BLAST of EWM23989.1 vs. NCBI_GenBank
Match: gi|1183321973|gb|ORX51773.1| (tRNA guanosine-2'-O-methyltransferase [Piromyces finnis]) HSP 1 Score: 89.7373 bits (221), Expect = 1.424e-15 Identity = 72/216 (33.33%), Postives = 103/216 (47.69%), Query Frame = 0
Query: 277 SGVLKALAAYR-EKATFISPTAMDPELAWVMNNMGGVRKRSRVFDPFMGSGSLLFTASLLGAEELFGSDAAQELMGGESRVNKQLIIKSFAYDKNDFSQWVDSLTSPVPVLTQADILSRQLHPLFRSG-YYDSIVTDPPYNIK--AKVFG------KAETATDTKAATARQQTIIP-----VIFALIDIAASVLVPGGRLVFFLP----EWTKQDI 473
SG + +A Y +K ++ T+MD EL+ +M+NM VR+ S V DPF+G+GS L T S GA L GSD + G+ + + I+ + K V + HP +G +D+IVTDPPY ++ AK G A T A R +P V+ LI+ A+ LV GGRLV++LP E+ K DI
Sbjct: 166 SGDRQLVAKYDLKKRKYLGTTSMDAELSLIMSNMALVRQNSLVLDPFVGTGSFLITCSHYGAFTL-GSDIDGRQIRGKGKTSIATNIEQYNMKKKVLGTIVSDMAH---------------HPWRNNGELFDAIVTDPPYGVRAGAKKIGLNTDKYDAPPPTKRDAMNPRYPLTVPYEMEQVLIDLIEFASKYLVVGGRLVYWLPTNSEEYNKNDI 365
BLAST of EWM23989.1 vs. NCBI_GenBank
Match: gi|327261624|ref|XP_003215629.1| (PREDICTED: tRNA (guanine(10)-N2)-methyltransferase homolog [Anolis carolinensis]) HSP 1 Score: 90.1225 bits (222), Expect = 1.455e-15 Identity = 73/257 (28.40%), Postives = 124/257 (48.25%), Query Frame = 0
Query: 288 EKATFISPTAMDPELAWVMNNMGGVRKRSRVFDPFMGSGSLLFTASLLGAEELFGSD---AAQELMGGESRVNKQL---------IIKSFAYDKNDFSQWVDSLTSPVPVLTQADILSRQLHPLFRSG-YYDSIVTDPPYNIKA---------KVFGKAETATDTKAATARQQTIIPVIFALIDIAASVLVPGGRLVFFL----PEWTKQDIGCNKKSDANILSYMLSRTPKAFKVVFTLPQTFSPSFTRWLVCLEK 518
+K FI T+MD LA++M N G V+ VFDPF+G+G LL ++ GA +FG+D + +G SR N++ ++ + +K+ ++D+ S SR P++R G +D+I+TDPPY I+ ++ E T+ + + + ++F L+ AA LV GGRLV++L PE+T++ ++ R P K++ QT S +R+L+ +EK
Sbjct: 201 KKRHFIGNTSMDACLAFIMANHGRVKPNDVVFDPFIGTGGLLIASAHFGA-YVFGTDIDYSTVHGLGKASRKNQKWRGPDENIRANLRQYGLEKH----YLDAFVSDA---------SR---PIWRKGAQFDAIITDPPYGIREATRRTGSQKEMAKMTERGTENHISISSNYHLSDILFDLLKFAAEHLVIGGRLVYWLPIYKPEYTEE---------------IIPRHP-CLKLISNCEQTLSSHTSRYLITMEK 424
BLAST of EWM23989.1 vs. NCBI_GenBank
Match: gi|675868258|ref|XP_009019689.1| (hypothetical protein HELRODRAFT_132449, partial [Helobdella robusta] >gi|555699048|gb|ESO02281.1| hypothetical protein HELRODRAFT_132449, partial [Helobdella robusta]) HSP 1 Score: 88.5817 bits (218), Expect = 1.832e-15 Identity = 68/240 (28.33%), Postives = 113/240 (47.08%), Query Frame = 0
Query: 292 FISPTAMDPELAWVMNNMGGVRKRSRVFDPFMGSGSLLFTASLLGAEELFGSDAAQELM---GGESRVNKQLIIKSFAYDKNDFSQWVDSLTSPVPVLTQADILSRQLHPLFRSGYYDSIVTDPPYNIK---AKVFGKAETATDTKAATARQQ-------TIIPVIFALIDIAASVLVPGGRLVFFLPEWTKQDIGCNKKSDANILSYMLSRTPKAFKVVFTLPQTFSPSFTRWLVCLEK 518
FI T+MDP L+ +M NM VR+ S V+DPF+G+GSLL + + G + GSD ++ G SR ++ + + +N+ Q+ + A L +L + G +D+I+TDPPY I+ K+ K E D K + ++ L+ AA LV GGRLV+++P + N SD NI + + ++V Q + +R ++ ++K
Sbjct: 126 FIGNTSMDPTLSMIMANMAHVREGSLVYDPFVGTGSLLVSCAHFGG-HVMGSDIDYNIITGVGKSSRAGQKYRCREESI-RNNLKQYGLEARYIDAFIADAS-LHDKLWKFSKKGLFDAIITDPPYGIREPTTKLGFKKEPIDDMKPEIEENHIPCKKNYNLNEILCDLLCFAAKYLVEGGRLVYWMPIYR------NDYSDLNIPQH------ERLRLVSNCEQVLNNRVSRRMITMQK 350
BLAST of EWM23989.1 vs. NCBI_GenBank
Match: gi|209875219|ref|XP_002139052.1| (tRNA guanosine-2'-O-methyltransferase TRM11 [Cryptosporidium muris RN66] >gi|209554658|gb|EEA04703.1| tRNA guanosine-2'-O-methyltransferase TRM11, putative [Cryptosporidium muris RN66]) HSP 1 Score: 89.3521 bits (220), Expect = 2.539e-15 Identity = 62/189 (32.80%), Postives = 99/189 (52.38%), Query Frame = 0
Query: 293 ISPTAMDPELAWVMNNMGGVRKRSRVFDPFMGSGSLLFTASLLGAEELFGSDAAQELMGGE--SRVNKQLI---IKSFAYDKNDFSQWVDSLTSPVPVLTQADILSRQLHPLFRSGYYDSIVTDPPYNIKAKVFGKAETATD------TKAATARQ----QTIIPVIFALIDIAASVLVPGGRLVFFLP 466
+ PT +D EL+++M N+G V+K S +FDPF G+G L AS LGA FGSD ++ G S +N LI I ++ +N FS ++ P+P + + D+ S + R + D+I+ DPPY I+A D T T+++ ++ +I+ ++ A+ LV GR+VF LP
Sbjct: 242 LGPTTLDNELSFIMCNIGKVKKNSIIFDPFCGTGGTLIAASHLGA-LCFGSDLDIRVLNGWSCSYINPHLIKSGILDESFSRNVFSNFI-YYKLPLPEIIRMDVSS----SILRYPFIDAIICDPPYGIRASSRTTKFEIMDEYFNDITHFPTSKRFGYIHSVKNIIYDMLIFASKYLVNNGRIVFLLP 424
BLAST of EWM23989.1 vs. NCBI_GenBank
Match: gi|599101190|ref|XP_007381175.1| (RNA methylase [Punctularia strigosozonata HHB-11173 SS5] >gi|390602255|gb|EIN11648.1| RNA methylase [Punctularia strigosozonata HHB-11173 SS5]) HSP 1 Score: 89.3521 bits (220), Expect = 2.614e-15 Identity = 101/380 (26.58%), Postives = 157/380 (41.32%), Query Frame = 0
Query: 110 DIVGPYFTKDLAD------VSRRCILTYGLFHLLAAGKNPSDTAASACKASNSKGYNHKKGMFSTTIPKYSLSTKLGKRWRVGVVGVSDQNEEILLSSRQKENAVNAFQPFL--HGTAGLDPTLRQLDERGPPPELDFFIFIFPKCGQVLLCLRLAQGPGTGKGYTFASKPRRPRSGVLKALAAYREKATFISPTAMDPELAWVMNNMGGVRKRSRVFDPFMGSGSLLFTASLLGAEELFGSDAAQELMGGESRVNKQLIIKSFAYDKNDFSQWVDSLTSPVPVLTQADILSRQLHPLFRSGYYDSIVTDPPYNIK--AKVFGKAETATDTKAATARQ----QTIIP---------VIFALIDIAASVLVPGGRLVFFLP 466
DI PY +L ++RRCIL ++ A G + A KAS+ + F +I Y+ T KR R G S N + + ++ E + F+ + G G +P Q G E+ F I + L+ +TF K R F T+M+ E++ +M N S V+DPF G+GS+L+TA+ GA ++GSD M G+ +N+ I+ A ++ SQ + L++ HP + +D+IVTDPPY ++ AK G+ + + A Q Q +P + L+ +A +L PGGRLVFFLP
Sbjct: 38 DIGRPYQVIELESDEHARLLARRCILVKSVYEFYARGSTYENMHAENRKASDRWLRYAEDTSFKFSILGYN-HTIPNKRQREVCEGFSYMNLQGKIDLKKPELVLGVFEEYTDPRGVVGANPE-DQYKRDGQFREVFFGRLIEEGSARPLI-------------HTFDVKKR-----------------VFFGNTSMEAEVSLLMANQTMATPGSLVYDPFAGTGSMLYTAAWFGA-YVYGSDIDGRQMRGKGAINQTTGIRR-AAEQYGVSQRIMDLST----------FDMTHHPWRKGSIFDAIVTDPPYGVRAGAKRLGRRKDRPNRPAFDPAQRKDEQPYVPPTSPYELSQLASDLVHLARYLLKPGGRLVFFLP 373
BLAST of EWM23989.1 vs. NCBI_GenBank
Match: gi|1183432024|gb|ORY56260.1| (tRNA guanosine-2'-O-methyltransferase [Neocallimastix californiae]) HSP 1 Score: 88.5817 bits (218), Expect = 3.349e-15 Identity = 71/216 (32.87%), Postives = 102/216 (47.22%), Query Frame = 0
Query: 277 SGVLKALAAYR-EKATFISPTAMDPELAWVMNNMGGVRKRSRVFDPFMGSGSLLFTASLLGAEELFGSDAAQELMGGESRVNKQLIIKSFAYDKNDFSQWVDSLTSPVPVLTQADILSRQLHPLFRSG-YYDSIVTDPPYNIK--AKVFGKAETATDTKAATARQQT------IIP-----VIFALIDIAASVLVPGGRLVFFLP----EWTKQDI 473
SG + +A Y +K ++ T+MD EL+ +M+NM VR+ S V DPF+G+GS L T S GA L GSD + G+ + + I+ + K V + HP +G +D+IVTDPPY ++ AK G D T R +P V+ LI+ A+ LV GGRLV++LP E+ K DI
Sbjct: 166 SGDRQLVATYDLKKRKYLGTTSMDAELSLIMSNMALVRQNSLVLDPFVGTGSFLITCSHYGAFTL-GSDIDGRQIRGKGKTSIATNIEQYNMKKRVLGTIVSDMAH---------------HPWRNNGELFDAIVTDPPYGVRAGAKKIGLNTEKYDAPPPTKRDVMNPRYPLTVPYEMEQVLIDLIEFASKYLVIGGRLVYWLPTNSEEYNKNDI 365
BLAST of EWM23989.1 vs. NCBI_GenBank
Match: gi|1098430469|gb|OII78292.1| (tRNA guanosine-2-O-methyltransferase TRM11 [Cryptosporidium andersoni]) HSP 1 Score: 87.8113 bits (216), Expect = 7.333e-15 Identity = 64/190 (33.68%), Postives = 99/190 (52.11%), Query Frame = 0
Query: 293 ISPTAMDPELAWVMNNMGGVRKRSRVFDPFMGSGSLLFTASLLGAEELFGSDAAQELMGGE--SRVNKQLIIKSFAYDKND----FSQWVDSLTSPVPVLTQADILSRQLHPLFRSGYYDSIVTDPPYNIKA-----KVFGKAETATD-----TKAATARQQTIIPVIFALIDIAASVLVPGGRLVFFLP 466
+ PT +D EL+++M N+G V+K S +FDPF G+G L AS LGA FGSD ++ G S +N L IKS D++ FS ++ P+P + + D+ S + R + D+I+ DPPY I+A K+ E+ D T ++ +I+ ++ A+ LV GR+VF LP
Sbjct: 242 LGPTTLDNELSFIMCNIGKVKKNSIIFDPFCGTGGTLIAASHLGA-LCFGSDLDIRVLNGWSCSYINPHL-IKSGILDESSSRSIFSNFI-YYKLPLPEIIRMDVSS----SILRYPFIDAIICDPPYGIRASSRTTKIEVMDESFNDITHFPTSKGFGYIHSVENIIYDMLIFASKYLVNNGRIVFLLP 424 The following BLAST results are available for this feature:
BLAST of EWM23989.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|