EWM23976.1, cds6708 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23976.1 vs. NCBI_GenBank
Match: gi|585105262|gb|EWM23976.1| (cytochrome c oxidase polypeptide vib [Nannochloropsis gaditana]) HSP 1 Score: 276.174 bits (705), Expect = 4.680e-94 Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0
Query: 1 MSTLEVTDLPVPAKDERFPSVNQALNCWNKYNEWVLCLKKNEKDESKCFLPRFNMRELCPTEWVEKWDADRGEGKFAGLQEDDAVEKVWIRVGVECAGIGAEGDDKSRKISSLKATISARSLNDDPAVAVLKWILV 136
MSTLEVTDLPVPAKDERFPSVNQALNCWNKYNEWVLCLKKNEKDESKCFLPRFNMRELCPTEWVEKWDADRGEGKFAGLQEDDAVEKVWIRVGVECAGIGAEGDDKSRKISSLKATISARSLNDDPAVAVLKWILV
Sbjct: 1 MSTLEVTDLPVPAKDERFPSVNQALNCWNKYNEWVLCLKKNEKDESKCFLPRFNMRELCPTEWVEKWDADRGEGKFAGLQEDDAVEKVWIRVGVECAGIGAEGDDKSRKISSLKATISARSLNDDPAVAVLKWILV 136
BLAST of EWM23976.1 vs. NCBI_GenBank
Match: gi|299471049|emb|CBN78909.1| (cytochrome c oxidase subunit 6b [Ectocarpus siliculosus]) HSP 1 Score: 89.7373 bits (221), Expect = 5.917e-21 Identity = 41/69 (59.42%), Postives = 48/69 (69.57%), Query Frame = 0
Query: 15 DERFPSVNQALNCWNKYNEWVLCLKKNEK---DESKCFLPRFNMRELCPTEWVEKWDADRGEGKFAGLQ 80
D RFP+VNQA +CWN YNEWVLC KK E+ D KC+ R N LCP EW EKWD DR EG +AG++
Sbjct: 14 DSRFPTVNQANHCWNLYNEWVLCTKKAEEAGDDAKKCYRKRHNALALCPDEWTEKWDEDRDEGTYAGIK 82
BLAST of EWM23976.1 vs. NCBI_GenBank
Match: gi|1173942572|gb|OQR91544.1| (hypothetical protein THRCLA_22451 [Thraustotheca clavata]) HSP 1 Score: 88.1965 bits (217), Expect = 1.972e-20 Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = 0
Query: 8 DLPVPAKDERFPSVNQALNCWNKYNEWVLCLKKNEKDESKCFLPRFNMRELCPTEWVEKWDADRGEGKFAGLQE 81
DL D RFP+ NQ +CW +YNEW LCLKKN+ DE C R + LCP W+EKWD +R EG F+G+Q+
Sbjct: 6 DLKTTPVDPRFPTQNQTQHCWTRYNEWALCLKKNDDDEDVCKSARSYAKSLCPGSWIEKWDGERDEGNFSGVQK 79
BLAST of EWM23976.1 vs. NCBI_GenBank
Match: gi|669161310|ref|XP_008616217.1| (hypothetical protein SDRG_11941 [Saprolegnia diclina VS20] >gi|813138778|ref|XP_012198803.1| hypothetical protein SPRG_04489 [Saprolegnia parasitica CBS 223.65] >gi|530732122|gb|EQC30364.1| hypothetical protein SDRG_11941 [Saprolegnia diclina VS20] >gi|641536707|gb|KDO30588.1| hypothetical protein SPRG_04489 [Saprolegnia parasitica CBS 223.65] >gi|1173943967|gb|OQR92755.1| hypothetical protein ACHHYP_03234 [Achlya hypogyna]) HSP 1 Score: 85.5001 bits (210), Expect = 1.899e-19 Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 0
Query: 8 DLPVPAKDERFPSVNQALNCWNKYNEWVLCLKKNEKDESKCFLPRFNMRELCPTEWVEKWDADRGEGKFAGLQE 81
DL D RFP+ NQ +CW +YNEW LCLKKN+ DE C R + +CP W+EKWD +R +G F+G+Q+
Sbjct: 6 DLKTTPVDPRFPTQNQTQHCWTRYNEWALCLKKNDDDEDACKQTRQYAKAICPGSWMEKWDTERDDGNFSGVQK 79
BLAST of EWM23976.1 vs. NCBI_GenBank
Match: gi|698800012|ref|XP_009833035.1| (hypothetical protein H257_08705 [Aphanomyces astaci] >gi|574111754|gb|ETV77248.1| hypothetical protein H257_08705 [Aphanomyces astaci]) HSP 1 Score: 84.3445 bits (207), Expect = 5.827e-19 Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 0
Query: 6 VTDLPVPAKDERFPSVNQALNCWNKYNEWVLCLKKNEKDESKCFLPRFNMRELCPTEWVEKWDADRGEGKFAGL 79
DL D RFP+ NQ +CW +YNEW LCLKKN+ DE C R + LCP W+EKWD +R EG F+G+
Sbjct: 4 AADLKTTPVDPRFPTQNQTQHCWVRYNEWALCLKKNDDDEDACKHKRQYAKSLCPGSWLEKWDTERDEGNFSGV 77
BLAST of EWM23976.1 vs. NCBI_GenBank
Match: gi|673046727|ref|XP_008877324.1| (hypothetical protein H310_12132 [Aphanomyces invadans] >gi|574467096|gb|ETV94121.1| hypothetical protein H310_12132 [Aphanomyces invadans]) HSP 1 Score: 83.9593 bits (206), Expect = 7.903e-19 Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 0
Query: 6 VTDLPVPAKDERFPSVNQALNCWNKYNEWVLCLKKNEKDESKCFLPRFNMRELCPTEWVEKWDADRGEGKFAGL 79
DL D RFP+ NQ +CW +YNEW LCLKKN+ DE C R + LCP W+EKWD +R EG F+G+
Sbjct: 4 AADLKTTPVDPRFPTQNQTQHCWVRYNEWALCLKKNDDDEDACKKHRQYAKSLCPGSWLEKWDTERDEGNFSGV 77
BLAST of EWM23976.1 vs. NCBI_GenBank
Match: gi|1072237349|gb|OEU22076.1| (cytochrome c oxidase subunit H [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 80.4925 bits (197), Expect = 3.921e-17 Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 0
Query: 5 EVTDLPVPAKDERFPSVNQALNCWNKYNEWVLCLKKNEKD-ESKCFLPRFNMRELCPTEWVEKWDADRGEGKFAGLQE 81
+V ++ +D RFPS NQAL+CWN+YNEW+LC K++ D + KC + R +CP+ W+E WD R EG F G+++
Sbjct: 28 QVKNVRTTPRDARFPSQNQALHCWNRYNEWLLCKKQSGDDADEKCQVYRQYASSICPSPWIENWDESREEGTFMGIKD 105
BLAST of EWM23976.1 vs. NCBI_GenBank
Match: gi|675170589|ref|XP_008894179.1| (hypothetical protein PPTG_03256 [Phytophthora parasitica INRA-310] >gi|566018635|gb|ETI41546.1| hypothetical protein F443_13223 [Phytophthora parasitica P1569] >gi|567955961|gb|ETK81590.1| hypothetical protein L915_12915 [Phytophthora parasitica] >gi|567984633|gb|ETL34996.1| hypothetical protein L916_12824 [Phytophthora parasitica] >gi|568014060|gb|ETL88237.1| hypothetical protein L917_12666 [Phytophthora parasitica] >gi|568044283|gb|ETM41503.1| hypothetical protein L914_12724 [Phytophthora parasitica] >gi|568105566|gb|ETN20202.1| hypothetical protein PPTG_03256 [Phytophthora parasitica INRA-310] >gi|570322243|gb|ETO70191.1| hypothetical protein F444_13302 [Phytophthora parasitica P1976] >gi|570946036|gb|ETP11293.1| hypothetical protein F441_13174 [Phytophthora parasitica CJ01A1] >gi|570969019|gb|ETP32138.1| hypothetical protein F442_19095 [Phytophthora parasitica P10297] >gi|570978101|gb|ETP39440.1| hypothetical protein F442_13094 [Phytophthora parasitica P10297] >gi|970656980|gb|KUF94924.1| hypothetical protein AM588_10005010 [Phytophthora nicotianae] >gi|970664916|gb|KUG01709.1| Cytochrome c oxidase subunit 6b-1 [Phytophthora nicotianae]) HSP 1 Score: 79.337 bits (194), Expect = 7.304e-17 Identity = 39/79 (49.37%), Postives = 49/79 (62.03%), Query Frame = 0
Query: 2 STLEVTDLPVPAKDERFPSVNQALNCWNKYNEWVLCLKKNEKDESKCFLPRFNMRELCPTEWVEKWDADRGEGKFAGLQ 80
S L+ T L D RFP+ NQA +CW +YNE+VLCLK N+ DE C N +CP+ WVE+WD R EG F G+Q
Sbjct: 6 SKLKTTPL-----DPRFPNQNQAQHCWTRYNEFVLCLKNNDGDEDTCKKYFQNAASICPSSWVERWDEQREEGTFQGVQ 79
BLAST of EWM23976.1 vs. NCBI_GenBank
Match: gi|301104789|ref|XP_002901479.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262100954|gb|EEY59006.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 78.5666 bits (192), Expect = 1.244e-16 Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 0
Query: 5 EVTDLPVPAKDERFPSVNQALNCWNKYNEWVLCLKKNEKDESKCFLPRFNMRELCPTEWVEKWDADRGEGKFAGLQ 80
E + L D RFP+ NQA +CW +YNE+VLCLK N+ DE C N +CP+ W+E+WD R EG F G+Q
Sbjct: 4 EDSKLKTTPLDPRFPNQNQAQHCWTRYNEFVLCLKNNDGDEDTCKKYFQNAASICPSSWMERWDEQREEGSFQGVQ 79
BLAST of EWM23976.1 vs. NCBI_GenBank
Match: gi|223993617|ref|XP_002286492.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220977807|gb|EED96133.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 77.7962 bits (190), Expect = 2.137e-16 Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 0
Query: 14 KDERFPSVNQALNCWNKYNEWVLCLKKNEKDESKCFLPRFNMRELCPTEWVEKWDADRGEGKFAGLQED 82
+D RFP+ NQA +CWN+YNEW++CLK + DE C R ++CPT W +KWD +RGEG + G++ D
Sbjct: 5 RDARFPTQNQANHCWNRYNEWLVCLKSTQ-DEEGCKAMRNMAVKICPTIWTDKWDEERGEGIYPGIKTD 72 The following BLAST results are available for this feature:
BLAST of EWM23976.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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