EWM23976.1, cds6708 (CDS) Nannochloropsis gaditana

Overview
NameEWM23976.1
Unique Namecds6708
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:353039..353121 -
Alignment locationCM002469.1:352622..352789 -
Alignment locationCM002469.1:352402..352561 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23976.1
Productcytochrome c oxidase polypeptide vib
Orig transcript idgnl|cribi|Naga_100027g31.154.mrna
GeneCOX6b
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:353039..353121 -
CM002469.1supercontigCM002469.1:352622..352789 -
CM002469.1supercontigCM002469.1:352402..352561 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0003824catalytic activity
GO:0004129cytochrome-c oxidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR003213Cyt_c_oxidase_su6B
Homology
BLAST of EWM23976.1 vs. NCBI_GenBank
Match: gi|585105262|gb|EWM23976.1| (cytochrome c oxidase polypeptide vib [Nannochloropsis gaditana])

HSP 1 Score: 276.174 bits (705), Expect = 4.680e-94
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0
Query:    1 MSTLEVTDLPVPAKDERFPSVNQALNCWNKYNEWVLCLKKNEKDESKCFLPRFNMRELCPTEWVEKWDADRGEGKFAGLQEDDAVEKVWIRVGVECAGIGAEGDDKSRKISSLKATISARSLNDDPAVAVLKWILV 136
            MSTLEVTDLPVPAKDERFPSVNQALNCWNKYNEWVLCLKKNEKDESKCFLPRFNMRELCPTEWVEKWDADRGEGKFAGLQEDDAVEKVWIRVGVECAGIGAEGDDKSRKISSLKATISARSLNDDPAVAVLKWILV
Sbjct:    1 MSTLEVTDLPVPAKDERFPSVNQALNCWNKYNEWVLCLKKNEKDESKCFLPRFNMRELCPTEWVEKWDADRGEGKFAGLQEDDAVEKVWIRVGVECAGIGAEGDDKSRKISSLKATISARSLNDDPAVAVLKWILV 136          
BLAST of EWM23976.1 vs. NCBI_GenBank
Match: gi|299471049|emb|CBN78909.1| (cytochrome c oxidase subunit 6b [Ectocarpus siliculosus])

HSP 1 Score: 89.7373 bits (221), Expect = 5.917e-21
Identity = 41/69 (59.42%), Postives = 48/69 (69.57%), Query Frame = 0
Query:   15 DERFPSVNQALNCWNKYNEWVLCLKKNEK---DESKCFLPRFNMRELCPTEWVEKWDADRGEGKFAGLQ 80
            D RFP+VNQA +CWN YNEWVLC KK E+   D  KC+  R N   LCP EW EKWD DR EG +AG++
Sbjct:   14 DSRFPTVNQANHCWNLYNEWVLCTKKAEEAGDDAKKCYRKRHNALALCPDEWTEKWDEDRDEGTYAGIK 82          
BLAST of EWM23976.1 vs. NCBI_GenBank
Match: gi|1173942572|gb|OQR91544.1| (hypothetical protein THRCLA_22451 [Thraustotheca clavata])

HSP 1 Score: 88.1965 bits (217), Expect = 1.972e-20
Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = 0
Query:    8 DLPVPAKDERFPSVNQALNCWNKYNEWVLCLKKNEKDESKCFLPRFNMRELCPTEWVEKWDADRGEGKFAGLQE 81
            DL     D RFP+ NQ  +CW +YNEW LCLKKN+ DE  C   R   + LCP  W+EKWD +R EG F+G+Q+
Sbjct:    6 DLKTTPVDPRFPTQNQTQHCWTRYNEWALCLKKNDDDEDVCKSARSYAKSLCPGSWIEKWDGERDEGNFSGVQK 79          
BLAST of EWM23976.1 vs. NCBI_GenBank
Match: gi|669161310|ref|XP_008616217.1| (hypothetical protein SDRG_11941 [Saprolegnia diclina VS20] >gi|813138778|ref|XP_012198803.1| hypothetical protein SPRG_04489 [Saprolegnia parasitica CBS 223.65] >gi|530732122|gb|EQC30364.1| hypothetical protein SDRG_11941 [Saprolegnia diclina VS20] >gi|641536707|gb|KDO30588.1| hypothetical protein SPRG_04489 [Saprolegnia parasitica CBS 223.65] >gi|1173943967|gb|OQR92755.1| hypothetical protein ACHHYP_03234 [Achlya hypogyna])

HSP 1 Score: 85.5001 bits (210), Expect = 1.899e-19
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 0
Query:    8 DLPVPAKDERFPSVNQALNCWNKYNEWVLCLKKNEKDESKCFLPRFNMRELCPTEWVEKWDADRGEGKFAGLQE 81
            DL     D RFP+ NQ  +CW +YNEW LCLKKN+ DE  C   R   + +CP  W+EKWD +R +G F+G+Q+
Sbjct:    6 DLKTTPVDPRFPTQNQTQHCWTRYNEWALCLKKNDDDEDACKQTRQYAKAICPGSWMEKWDTERDDGNFSGVQK 79          
BLAST of EWM23976.1 vs. NCBI_GenBank
Match: gi|698800012|ref|XP_009833035.1| (hypothetical protein H257_08705 [Aphanomyces astaci] >gi|574111754|gb|ETV77248.1| hypothetical protein H257_08705 [Aphanomyces astaci])

HSP 1 Score: 84.3445 bits (207), Expect = 5.827e-19
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 0
Query:    6 VTDLPVPAKDERFPSVNQALNCWNKYNEWVLCLKKNEKDESKCFLPRFNMRELCPTEWVEKWDADRGEGKFAGL 79
              DL     D RFP+ NQ  +CW +YNEW LCLKKN+ DE  C   R   + LCP  W+EKWD +R EG F+G+
Sbjct:    4 AADLKTTPVDPRFPTQNQTQHCWVRYNEWALCLKKNDDDEDACKHKRQYAKSLCPGSWLEKWDTERDEGNFSGV 77          
BLAST of EWM23976.1 vs. NCBI_GenBank
Match: gi|673046727|ref|XP_008877324.1| (hypothetical protein H310_12132 [Aphanomyces invadans] >gi|574467096|gb|ETV94121.1| hypothetical protein H310_12132 [Aphanomyces invadans])

HSP 1 Score: 83.9593 bits (206), Expect = 7.903e-19
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 0
Query:    6 VTDLPVPAKDERFPSVNQALNCWNKYNEWVLCLKKNEKDESKCFLPRFNMRELCPTEWVEKWDADRGEGKFAGL 79
              DL     D RFP+ NQ  +CW +YNEW LCLKKN+ DE  C   R   + LCP  W+EKWD +R EG F+G+
Sbjct:    4 AADLKTTPVDPRFPTQNQTQHCWVRYNEWALCLKKNDDDEDACKKHRQYAKSLCPGSWLEKWDTERDEGNFSGV 77          
BLAST of EWM23976.1 vs. NCBI_GenBank
Match: gi|1072237349|gb|OEU22076.1| (cytochrome c oxidase subunit H [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 80.4925 bits (197), Expect = 3.921e-17
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 0
Query:    5 EVTDLPVPAKDERFPSVNQALNCWNKYNEWVLCLKKNEKD-ESKCFLPRFNMRELCPTEWVEKWDADRGEGKFAGLQE 81
            +V ++    +D RFPS NQAL+CWN+YNEW+LC K++  D + KC + R     +CP+ W+E WD  R EG F G+++
Sbjct:   28 QVKNVRTTPRDARFPSQNQALHCWNRYNEWLLCKKQSGDDADEKCQVYRQYASSICPSPWIENWDESREEGTFMGIKD 105          
BLAST of EWM23976.1 vs. NCBI_GenBank
Match: gi|675170589|ref|XP_008894179.1| (hypothetical protein PPTG_03256 [Phytophthora parasitica INRA-310] >gi|566018635|gb|ETI41546.1| hypothetical protein F443_13223 [Phytophthora parasitica P1569] >gi|567955961|gb|ETK81590.1| hypothetical protein L915_12915 [Phytophthora parasitica] >gi|567984633|gb|ETL34996.1| hypothetical protein L916_12824 [Phytophthora parasitica] >gi|568014060|gb|ETL88237.1| hypothetical protein L917_12666 [Phytophthora parasitica] >gi|568044283|gb|ETM41503.1| hypothetical protein L914_12724 [Phytophthora parasitica] >gi|568105566|gb|ETN20202.1| hypothetical protein PPTG_03256 [Phytophthora parasitica INRA-310] >gi|570322243|gb|ETO70191.1| hypothetical protein F444_13302 [Phytophthora parasitica P1976] >gi|570946036|gb|ETP11293.1| hypothetical protein F441_13174 [Phytophthora parasitica CJ01A1] >gi|570969019|gb|ETP32138.1| hypothetical protein F442_19095 [Phytophthora parasitica P10297] >gi|570978101|gb|ETP39440.1| hypothetical protein F442_13094 [Phytophthora parasitica P10297] >gi|970656980|gb|KUF94924.1| hypothetical protein AM588_10005010 [Phytophthora nicotianae] >gi|970664916|gb|KUG01709.1| Cytochrome c oxidase subunit 6b-1 [Phytophthora nicotianae])

HSP 1 Score: 79.337 bits (194), Expect = 7.304e-17
Identity = 39/79 (49.37%), Postives = 49/79 (62.03%), Query Frame = 0
Query:    2 STLEVTDLPVPAKDERFPSVNQALNCWNKYNEWVLCLKKNEKDESKCFLPRFNMRELCPTEWVEKWDADRGEGKFAGLQ 80
            S L+ T L     D RFP+ NQA +CW +YNE+VLCLK N+ DE  C     N   +CP+ WVE+WD  R EG F G+Q
Sbjct:    6 SKLKTTPL-----DPRFPNQNQAQHCWTRYNEFVLCLKNNDGDEDTCKKYFQNAASICPSSWVERWDEQREEGTFQGVQ 79          
BLAST of EWM23976.1 vs. NCBI_GenBank
Match: gi|301104789|ref|XP_002901479.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262100954|gb|EEY59006.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 78.5666 bits (192), Expect = 1.244e-16
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 0
Query:    5 EVTDLPVPAKDERFPSVNQALNCWNKYNEWVLCLKKNEKDESKCFLPRFNMRELCPTEWVEKWDADRGEGKFAGLQ 80
            E + L     D RFP+ NQA +CW +YNE+VLCLK N+ DE  C     N   +CP+ W+E+WD  R EG F G+Q
Sbjct:    4 EDSKLKTTPLDPRFPNQNQAQHCWTRYNEFVLCLKNNDGDEDTCKKYFQNAASICPSSWMERWDEQREEGSFQGVQ 79          
BLAST of EWM23976.1 vs. NCBI_GenBank
Match: gi|223993617|ref|XP_002286492.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220977807|gb|EED96133.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 77.7962 bits (190), Expect = 2.137e-16
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 0
Query:   14 KDERFPSVNQALNCWNKYNEWVLCLKKNEKDESKCFLPRFNMRELCPTEWVEKWDADRGEGKFAGLQED 82
            +D RFP+ NQA +CWN+YNEW++CLK  + DE  C   R    ++CPT W +KWD +RGEG + G++ D
Sbjct:    5 RDARFPTQNQANHCWNRYNEWLVCLKSTQ-DEEGCKAMRNMAVKICPTIWTDKWDEERGEGIYPGIKTD 72          
The following BLAST results are available for this feature:
BLAST of EWM23976.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105262|gb|EWM23976.1|4.680e-94100.00cytochrome c oxidase polypeptide vib [Nannochlorop... [more]
gi|299471049|emb|CBN78909.1|5.917e-2159.42cytochrome c oxidase subunit 6b [Ectocarpus silicu... [more]
gi|1173942572|gb|OQR91544.1|1.972e-2051.35hypothetical protein THRCLA_22451 [Thraustotheca c... [more]
gi|669161310|ref|XP_008616217.1|1.899e-1948.65hypothetical protein SDRG_11941 [Saprolegnia dicli... [more]
gi|698800012|ref|XP_009833035.1|5.827e-1950.00hypothetical protein H257_08705 [Aphanomyces astac... [more]
gi|673046727|ref|XP_008877324.1|7.903e-1950.00hypothetical protein H310_12132 [Aphanomyces invad... [more]
gi|1072237349|gb|OEU22076.1|3.921e-1744.87cytochrome c oxidase subunit H [Fragilariopsis cyl... [more]
gi|675170589|ref|XP_008894179.1|7.304e-1749.37hypothetical protein PPTG_03256 [Phytophthora para... [more]
gi|301104789|ref|XP_002901479.1|1.244e-1647.37conserved hypothetical protein [Phytophthora infes... [more]
gi|223993617|ref|XP_002286492.1|2.137e-1649.28predicted protein, partial [Thalassiosira pseudona... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6724rna6724Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications