EWM23956.1, cds6680 (CDS) Nannochloropsis gaditana

Overview
NameEWM23956.1
Unique Namecds6680
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:280194..280250 +
Alignment locationCM002469.1:280450..281010 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23956.1
ProductComplex 1 LYR protein
Orig transcript idgnl|cribi|Naga_100027g1.134.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:280194..280250 +
CM002469.1supercontigCM002469.1:280450..281010 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
Homology
BLAST of EWM23956.1 vs. NCBI_GenBank
Match: gi|585105242|gb|EWM23956.1| (Complex 1 LYR protein [Nannochloropsis gaditana])

HSP 1 Score: 419.083 bits (1076), Expect = 2.399e-148
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0
Query:    1 MTPNEIRAAVLHLYRNCLRSARRIPTQEQREIWLAYTRGKFKENRRITDVRLKRAFQDGQEQLSRMNYFHDVRNRQIGSPHGGNGGPRRHPRQGAGGAAAPASSGGEHAPLPAGSSPEASWSLKAFLETHLPGVSREELRQYQRCLEADGFGSAGMLKFLREEDLGGWKTAHRRAMLDALSRLRKGKGKGGRTQAWVTLAEPRRK 205
            MTPNEIRAAVLHLYRNCLRSARRIPTQEQREIWLAYTRGKFKENRRITDVRLKRAFQDGQEQLSRMNYFHDVRNRQIGSPHGGNGGPRRHPRQGAGGAAAPASSGGEHAPLPAGSSPEASWSLKAFLETHLPGVSREELRQYQRCLEADGFGSAGMLKFLREEDLGGWKTAHRRAMLDALSRLRKGKGKGGRTQAWVTLAEPRRK
Sbjct:    1 MTPNEIRAAVLHLYRNCLRSARRIPTQEQREIWLAYTRGKFKENRRITDVRLKRAFQDGQEQLSRMNYFHDVRNRQIGSPHGGNGGPRRHPRQGAGGAAAPASSGGEHAPLPAGSSPEASWSLKAFLETHLPGVSREELRQYQRCLEADGFGSAGMLKFLREEDLGGWKTAHRRAMLDALSRLRKGKGKGGRTQAWVTLAEPRRK 205          
BLAST of EWM23956.1 vs. NCBI_GenBank
Match: gi|1214712293|gb|OWZ23244.1| (putative mitochondrial protein [Phytophthora megakarya])

HSP 1 Score: 66.2402 bits (160), Expect = 9.895e-11
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 0
Query:    9 AVLHLYRNCLRSARRIPTQEQREIWLAYTRGKFKENRRITDV-RLKRAFQDGQEQLSRMNYFHDV 72
            AVL LY  CLRSARR P  EQRE+   Y + KF++ +   D  R++    DG+E+L RMNY+H +
Sbjct:    5 AVLQLYAQCLRSARRCPQWEQREMMKTYVKMKFRDEKHTQDPDRVRMLLADGREELDRMNYYHSI 69          
BLAST of EWM23956.1 vs. NCBI_GenBank
Match: gi|570979357|gb|ETP40309.1| (hypothetical protein F442_12342 [Phytophthora parasitica P10297])

HSP 1 Score: 65.855 bits (159), Expect = 2.179e-10
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 0
Query:    5 EIRAAVLHLYRNCLRSARRIPTQEQREIWLAYTRGKFKENRRITD-VRLKRAFQDGQEQLSRMNYFHDV 72
            +++ +VL LY  CLRSARR P  EQRE+   Y + KF++     D  R++    DG+E+L RMNY+H V
Sbjct:    6 KLKGSVLQLYAQCLRSARRCPQWEQREMMKTYVQMKFRDEMNTQDPDRVRVLLADGREELERMNYYHSV 74          
BLAST of EWM23956.1 vs. NCBI_GenBank
Match: gi|566019558|gb|ETI42469.1| (hypothetical protein F443_12419 [Phytophthora parasitica P1569] >gi|567956870|gb|ETK82485.1| hypothetical protein L915_12146 [Phytophthora parasitica] >gi|567985530|gb|ETL35870.1| hypothetical protein L916_12071 [Phytophthora parasitica] >gi|568014937|gb|ETL89114.1| hypothetical protein L917_11906 [Phytophthora parasitica] >gi|568045208|gb|ETM42364.1| hypothetical protein L914_11978 [Phytophthora parasitica] >gi|570323140|gb|ETO71088.1| hypothetical protein F444_12521 [Phytophthora parasitica P1976] >gi|570946925|gb|ETP12182.1| hypothetical protein F441_12406 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 65.4698 bits (158), Expect = 2.369e-10
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 0
Query:    5 EIRAAVLHLYRNCLRSARRIPTQEQREIWLAYTRGKFKENRRITD-VRLKRAFQDGQEQLSRMNYFHDV 72
            +++ +VL LY  CLRSARR P  EQRE+   Y + KF++     D  R++    DG+E+L RMNY+H V
Sbjct:    6 KLKGSVLQLYAQCLRSARRCPQWEQREMMKTYVQMKFRDEMNTQDPDRVRVLLADGREELERMNYYHSV 74          
BLAST of EWM23956.1 vs. NCBI_GenBank
Match: gi|675199735|ref|XP_008908752.1| (hypothetical protein PPTG_14012 [Phytophthora parasitica INRA-310] >gi|568091426|gb|ETN06250.1| hypothetical protein PPTG_14012 [Phytophthora parasitica INRA-310])

HSP 1 Score: 65.4698 bits (158), Expect = 2.549e-10
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 0
Query:    5 EIRAAVLHLYRNCLRSARRIPTQEQREIWLAYTRGKFKENRRITD-VRLKRAFQDGQEQLSRMNYFHDV 72
            +++ +VL LY  CLRSARR P  EQRE+   Y + KF++     D  R++    DG+E+L RMNY+H V
Sbjct:    6 KLKGSVLQLYAQCLRSARRCPQWEQREMMKTYVQMKFRDEMNTQDPDRVRVLLADGREELERMNYYHSV 74          
BLAST of EWM23956.1 vs. NCBI_GenBank
Match: gi|695431521|ref|XP_009530705.1| (hypothetical protein PHYSODRAFT_513891 [Phytophthora sojae] >gi|348673457|gb|EGZ13276.1| hypothetical protein PHYSODRAFT_513891 [Phytophthora sojae])

HSP 1 Score: 65.4698 bits (158), Expect = 3.013e-10
Identity = 31/72 (43.06%), Postives = 46/72 (63.89%), Query Frame = 0
Query:    2 TPNEIRAAVLHLYRNCLRSARRIPTQEQREIWLAYTRGKFKENRRITD-VRLKRAFQDGQEQLSRMNYFHDV 72
            T  +++ +VL LY  CLRSARR P  EQR++  AY + KF++     D  R++    DG+E+L RM+Y+H V
Sbjct:    5 TTTKLKRSVLQLYAQCLRSARRCPQWEQRQMMTAYVQMKFRDEMMTQDPDRVRALLADGREELERMDYYHSV 76          
BLAST of EWM23956.1 vs. NCBI_GenBank
Match: gi|301091659|ref|XP_002896009.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262095670|gb|EEY53722.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 64.3142 bits (155), Expect = 6.431e-10
Identity = 33/73 (45.21%), Postives = 48/73 (65.75%), Query Frame = 0
Query:    1 MTPNEIRAAVLHLYRNCLRSARRIPTQEQREIWLAYTRGKFKENRRITDV-RLKRAFQDGQEQLSRMNYFHDV 72
            MT N ++ +VLHL+  CLRSARR P  +QRE+  AY + KF++     D  R++    DG+E+L RMNY+H +
Sbjct:    1 MTGN-VKRSVLHLFALCLRSARRCPQWQQREMMKAYVQMKFRDEMSTKDSDRVRMLLADGREELERMNYYHFI 72          
BLAST of EWM23956.1 vs. NCBI_GenBank
Match: gi|698787314|ref|XP_009826689.1| (hypothetical protein H257_04030 [Aphanomyces astaci] >gi|574117778|gb|ETV83259.1| hypothetical protein H257_04030 [Aphanomyces astaci])

HSP 1 Score: 63.5438 bits (153), Expect = 1.305e-9
Identity = 29/70 (41.43%), Postives = 43/70 (61.43%), Query Frame = 0
Query:    4 NEIRAAVLHLYRNCLRSARRIPTQEQREIWLAYTRGKFKENRRITDVR-LKRAFQDGQEQLSRMNYFHDV 72
            NE+R  VLH+Y+ CL SA + P    RE   AY R KF++   + DV+ +K    D +E+L RM+Y+H +
Sbjct:    2 NELRREVLHVYKACLVSASKCPQHVHRETMRAYARLKFRDKMHLRDVQAVKLCLADAKEELERMDYYHSM 71          
BLAST of EWM23956.1 vs. NCBI_GenBank
Match: gi|953501072|emb|CEG37718.1| (Complex 1 LYR protein [Plasmopara halstedii])

HSP 1 Score: 63.5438 bits (153), Expect = 1.367e-9
Identity = 31/68 (45.59%), Postives = 43/68 (63.24%), Query Frame = 0
Query:    6 IRAAVLHLYRNCLRSARRIPTQEQREIWLAYTRGKFKENRRITDV-RLKRAFQDGQEQLSRMNYFHDV 72
            +R  VL LY  CLRSARR P  EQRE+   Y R KF++     ++ R++    DG E+L+RMNY+H +
Sbjct:    1 MRHPVLQLYAQCLRSARRCPQWEQREMMKTYVRMKFRDEVNTQNLDRVQTLLADGWEELNRMNYYHSI 68          
BLAST of EWM23956.1 vs. NCBI_GenBank
Match: gi|325187858|emb|CCA22401.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 62.7734 bits (151), Expect = 1.659e-9
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 0
Query:    6 IRAAVLHLYRNCLRSARRIPTQEQREIWLAYTRGKFKENRRITDVR-LKRAFQDGQEQLSRMNYFHD-----VRNRQ 76
            +R  VL LYR+CLRSAR+ P  + RE+  AY + KF+E + + D R +K   ++G E+L RM Y+H+     V+N+Q
Sbjct:    1 MREVVLRLYRDCLRSARKCPEWQNREMVKAYIKLKFREQQSLRDPRAIKLLLREGNEELDRMQYYHEMYQLKVQNKQ 77          
The following BLAST results are available for this feature:
BLAST of EWM23956.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105242|gb|EWM23956.1|2.399e-148100.00Complex 1 LYR protein [Nannochloropsis gaditana][more]
gi|1214712293|gb|OWZ23244.1|9.895e-1147.69putative mitochondrial protein [Phytophthora megak... [more]
gi|570979357|gb|ETP40309.1|2.179e-1044.93hypothetical protein F442_12342 [Phytophthora para... [more]
gi|566019558|gb|ETI42469.1|2.369e-1044.93hypothetical protein F443_12419 [Phytophthora para... [more]
gi|675199735|ref|XP_008908752.1|2.549e-1044.93hypothetical protein PPTG_14012 [Phytophthora para... [more]
gi|695431521|ref|XP_009530705.1|3.013e-1043.06hypothetical protein PHYSODRAFT_513891 [Phytophtho... [more]
gi|301091659|ref|XP_002896009.1|6.431e-1045.21conserved hypothetical protein [Phytophthora infes... [more]
gi|698787314|ref|XP_009826689.1|1.305e-941.43hypothetical protein H257_04030 [Aphanomyces astac... [more]
gi|953501072|emb|CEG37718.1|1.367e-945.59Complex 1 LYR protein [Plasmopara halstedii][more]
gi|325187858|emb|CCA22401.1|1.659e-942.86conserved hypothetical protein [Albugo laibachii N... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6696rna6696Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications