EWM23956.1, cds6680 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23956.1 vs. NCBI_GenBank
Match: gi|585105242|gb|EWM23956.1| (Complex 1 LYR protein [Nannochloropsis gaditana]) HSP 1 Score: 419.083 bits (1076), Expect = 2.399e-148 Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0
Query: 1 MTPNEIRAAVLHLYRNCLRSARRIPTQEQREIWLAYTRGKFKENRRITDVRLKRAFQDGQEQLSRMNYFHDVRNRQIGSPHGGNGGPRRHPRQGAGGAAAPASSGGEHAPLPAGSSPEASWSLKAFLETHLPGVSREELRQYQRCLEADGFGSAGMLKFLREEDLGGWKTAHRRAMLDALSRLRKGKGKGGRTQAWVTLAEPRRK 205
MTPNEIRAAVLHLYRNCLRSARRIPTQEQREIWLAYTRGKFKENRRITDVRLKRAFQDGQEQLSRMNYFHDVRNRQIGSPHGGNGGPRRHPRQGAGGAAAPASSGGEHAPLPAGSSPEASWSLKAFLETHLPGVSREELRQYQRCLEADGFGSAGMLKFLREEDLGGWKTAHRRAMLDALSRLRKGKGKGGRTQAWVTLAEPRRK
Sbjct: 1 MTPNEIRAAVLHLYRNCLRSARRIPTQEQREIWLAYTRGKFKENRRITDVRLKRAFQDGQEQLSRMNYFHDVRNRQIGSPHGGNGGPRRHPRQGAGGAAAPASSGGEHAPLPAGSSPEASWSLKAFLETHLPGVSREELRQYQRCLEADGFGSAGMLKFLREEDLGGWKTAHRRAMLDALSRLRKGKGKGGRTQAWVTLAEPRRK 205
BLAST of EWM23956.1 vs. NCBI_GenBank
Match: gi|1214712293|gb|OWZ23244.1| (putative mitochondrial protein [Phytophthora megakarya]) HSP 1 Score: 66.2402 bits (160), Expect = 9.895e-11 Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 0
Query: 9 AVLHLYRNCLRSARRIPTQEQREIWLAYTRGKFKENRRITDV-RLKRAFQDGQEQLSRMNYFHDV 72
AVL LY CLRSARR P EQRE+ Y + KF++ + D R++ DG+E+L RMNY+H +
Sbjct: 5 AVLQLYAQCLRSARRCPQWEQREMMKTYVKMKFRDEKHTQDPDRVRMLLADGREELDRMNYYHSI 69
BLAST of EWM23956.1 vs. NCBI_GenBank
Match: gi|570979357|gb|ETP40309.1| (hypothetical protein F442_12342 [Phytophthora parasitica P10297]) HSP 1 Score: 65.855 bits (159), Expect = 2.179e-10 Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 0
Query: 5 EIRAAVLHLYRNCLRSARRIPTQEQREIWLAYTRGKFKENRRITD-VRLKRAFQDGQEQLSRMNYFHDV 72
+++ +VL LY CLRSARR P EQRE+ Y + KF++ D R++ DG+E+L RMNY+H V
Sbjct: 6 KLKGSVLQLYAQCLRSARRCPQWEQREMMKTYVQMKFRDEMNTQDPDRVRVLLADGREELERMNYYHSV 74
BLAST of EWM23956.1 vs. NCBI_GenBank
Match: gi|566019558|gb|ETI42469.1| (hypothetical protein F443_12419 [Phytophthora parasitica P1569] >gi|567956870|gb|ETK82485.1| hypothetical protein L915_12146 [Phytophthora parasitica] >gi|567985530|gb|ETL35870.1| hypothetical protein L916_12071 [Phytophthora parasitica] >gi|568014937|gb|ETL89114.1| hypothetical protein L917_11906 [Phytophthora parasitica] >gi|568045208|gb|ETM42364.1| hypothetical protein L914_11978 [Phytophthora parasitica] >gi|570323140|gb|ETO71088.1| hypothetical protein F444_12521 [Phytophthora parasitica P1976] >gi|570946925|gb|ETP12182.1| hypothetical protein F441_12406 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 65.4698 bits (158), Expect = 2.369e-10 Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 0
Query: 5 EIRAAVLHLYRNCLRSARRIPTQEQREIWLAYTRGKFKENRRITD-VRLKRAFQDGQEQLSRMNYFHDV 72
+++ +VL LY CLRSARR P EQRE+ Y + KF++ D R++ DG+E+L RMNY+H V
Sbjct: 6 KLKGSVLQLYAQCLRSARRCPQWEQREMMKTYVQMKFRDEMNTQDPDRVRVLLADGREELERMNYYHSV 74
BLAST of EWM23956.1 vs. NCBI_GenBank
Match: gi|675199735|ref|XP_008908752.1| (hypothetical protein PPTG_14012 [Phytophthora parasitica INRA-310] >gi|568091426|gb|ETN06250.1| hypothetical protein PPTG_14012 [Phytophthora parasitica INRA-310]) HSP 1 Score: 65.4698 bits (158), Expect = 2.549e-10 Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 0
Query: 5 EIRAAVLHLYRNCLRSARRIPTQEQREIWLAYTRGKFKENRRITD-VRLKRAFQDGQEQLSRMNYFHDV 72
+++ +VL LY CLRSARR P EQRE+ Y + KF++ D R++ DG+E+L RMNY+H V
Sbjct: 6 KLKGSVLQLYAQCLRSARRCPQWEQREMMKTYVQMKFRDEMNTQDPDRVRVLLADGREELERMNYYHSV 74
BLAST of EWM23956.1 vs. NCBI_GenBank
Match: gi|695431521|ref|XP_009530705.1| (hypothetical protein PHYSODRAFT_513891 [Phytophthora sojae] >gi|348673457|gb|EGZ13276.1| hypothetical protein PHYSODRAFT_513891 [Phytophthora sojae]) HSP 1 Score: 65.4698 bits (158), Expect = 3.013e-10 Identity = 31/72 (43.06%), Postives = 46/72 (63.89%), Query Frame = 0
Query: 2 TPNEIRAAVLHLYRNCLRSARRIPTQEQREIWLAYTRGKFKENRRITD-VRLKRAFQDGQEQLSRMNYFHDV 72
T +++ +VL LY CLRSARR P EQR++ AY + KF++ D R++ DG+E+L RM+Y+H V
Sbjct: 5 TTTKLKRSVLQLYAQCLRSARRCPQWEQRQMMTAYVQMKFRDEMMTQDPDRVRALLADGREELERMDYYHSV 76
BLAST of EWM23956.1 vs. NCBI_GenBank
Match: gi|301091659|ref|XP_002896009.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262095670|gb|EEY53722.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 64.3142 bits (155), Expect = 6.431e-10 Identity = 33/73 (45.21%), Postives = 48/73 (65.75%), Query Frame = 0
Query: 1 MTPNEIRAAVLHLYRNCLRSARRIPTQEQREIWLAYTRGKFKENRRITDV-RLKRAFQDGQEQLSRMNYFHDV 72
MT N ++ +VLHL+ CLRSARR P +QRE+ AY + KF++ D R++ DG+E+L RMNY+H +
Sbjct: 1 MTGN-VKRSVLHLFALCLRSARRCPQWQQREMMKAYVQMKFRDEMSTKDSDRVRMLLADGREELERMNYYHFI 72
BLAST of EWM23956.1 vs. NCBI_GenBank
Match: gi|698787314|ref|XP_009826689.1| (hypothetical protein H257_04030 [Aphanomyces astaci] >gi|574117778|gb|ETV83259.1| hypothetical protein H257_04030 [Aphanomyces astaci]) HSP 1 Score: 63.5438 bits (153), Expect = 1.305e-9 Identity = 29/70 (41.43%), Postives = 43/70 (61.43%), Query Frame = 0
Query: 4 NEIRAAVLHLYRNCLRSARRIPTQEQREIWLAYTRGKFKENRRITDVR-LKRAFQDGQEQLSRMNYFHDV 72
NE+R VLH+Y+ CL SA + P RE AY R KF++ + DV+ +K D +E+L RM+Y+H +
Sbjct: 2 NELRREVLHVYKACLVSASKCPQHVHRETMRAYARLKFRDKMHLRDVQAVKLCLADAKEELERMDYYHSM 71
BLAST of EWM23956.1 vs. NCBI_GenBank
Match: gi|953501072|emb|CEG37718.1| (Complex 1 LYR protein [Plasmopara halstedii]) HSP 1 Score: 63.5438 bits (153), Expect = 1.367e-9 Identity = 31/68 (45.59%), Postives = 43/68 (63.24%), Query Frame = 0
Query: 6 IRAAVLHLYRNCLRSARRIPTQEQREIWLAYTRGKFKENRRITDV-RLKRAFQDGQEQLSRMNYFHDV 72
+R VL LY CLRSARR P EQRE+ Y R KF++ ++ R++ DG E+L+RMNY+H +
Sbjct: 1 MRHPVLQLYAQCLRSARRCPQWEQREMMKTYVRMKFRDEVNTQNLDRVQTLLADGWEELNRMNYYHSI 68
BLAST of EWM23956.1 vs. NCBI_GenBank
Match: gi|325187858|emb|CCA22401.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 62.7734 bits (151), Expect = 1.659e-9 Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 0
Query: 6 IRAAVLHLYRNCLRSARRIPTQEQREIWLAYTRGKFKENRRITDVR-LKRAFQDGQEQLSRMNYFHD-----VRNRQ 76
+R VL LYR+CLRSAR+ P + RE+ AY + KF+E + + D R +K ++G E+L RM Y+H+ V+N+Q
Sbjct: 1 MREVVLRLYRDCLRSARKCPEWQNREMVKAYIKLKFREQQSLRDPRAIKLLLREGNEELDRMQYYHEMYQLKVQNKQ 77 The following BLAST results are available for this feature:
BLAST of EWM23956.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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