EWM24026.1, cds6678 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM24026.1 vs. NCBI_GenBank
Match: gi|585105313|gb|EWM24026.1| (hypothetical protein Naga_100040g46 [Nannochloropsis gaditana]) HSP 1 Score: 656.751 bits (1693), Expect = 0.000e+0 Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0
Query: 1 MVYSHSWSAFFAPPSSVSHVAMRANGGSWFSAHPSSSGSVHTTLLEKTRSQQSQRRQQKSIVGEEQSSSHHRRDLLRKALAFGGLLLGNTAVQTLSPWRQPLHLVTRFTDPASASELGGGMPQFEAQAMSTGRAAEFIKQHCQGILRAYNETGATPVFLYRGENINRPTLLKCPPDLMDVNTYQEGKEAAAFFAKMEEAMEGLPVRPSLGHLATSDMRSAAAWGTPCSVWPLGNELHYAWLRDAKAFWPVRAEKRDISVDDIRACVKREIQVDQNLDMAVKMGHEVMLSTGEFGFLVVPVAYEREVRARLGLGYE 315
MVYSHSWSAFFAPPSSVSHVAMRANGGSWFSAHPSSSGSVHTTLLEKTRSQQSQRRQQKSIVGEEQSSSHHRRDLLRKALAFGGLLLGNTAVQTLSPWRQPLHLVTRFTDPASASELGGGMPQFEAQAMSTGRAAEFIKQHCQGILRAYNETGATPVFLYRGENINRPTLLKCPPDLMDVNTYQEGKEAAAFFAKMEEAMEGLPVRPSLGHLATSDMRSAAAWGTPCSVWPLGNELHYAWLRDAKAFWPVRAEKRDISVDDIRACVKREIQVDQNLDMAVKMGHEVMLSTGEFGFLVVPVAYEREVRARLGLGYE
Sbjct: 1 MVYSHSWSAFFAPPSSVSHVAMRANGGSWFSAHPSSSGSVHTTLLEKTRSQQSQRRQQKSIVGEEQSSSHHRRDLLRKALAFGGLLLGNTAVQTLSPWRQPLHLVTRFTDPASASELGGGMPQFEAQAMSTGRAAEFIKQHCQGILRAYNETGATPVFLYRGENINRPTLLKCPPDLMDVNTYQEGKEAAAFFAKMEEAMEGLPVRPSLGHLATSDMRSAAAWGTPCSVWPLGNELHYAWLRDAKAFWPVRAEKRDISVDDIRACVKREIQVDQNLDMAVKMGHEVMLSTGEFGFLVVPVAYEREVRARLGLGYE 315
BLAST of EWM24026.1 vs. NCBI_GenBank
Match: gi|219125154|ref|XP_002182852.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405646|gb|EEC45588.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 97.8265 bits (242), Expect = 8.757e-21 Identity = 62/206 (30.10%), Postives = 103/206 (50.00%), Query Frame = 0
Query: 108 FTDPASASELGGGMPQFEAQAMSTGRAAEFIKQHC-QGILRAYNETGATPVFLYRGENINRPTLLKCPPDLMDVNTYQEGKEAAAFFAKMEEAMEGLPV--RPSLGHLATSDMRSAAAWGTPCSVWPLGNELHYAWLRDAKAFWPVRAEKRDISVDDIRACVKREIQVDQNLDMAVKMGHEVMLSTGEFG------FLVVPVAYER 304
F +AS L Q +S +A +++HC L + +TG LYRGEN++ T++ PDL+ TY ++A A+F +E+ + G V PS GH+AT++ AA WG P SVWPLG + + W R + +P A++ C ++ ++Q+L +A+K E++ +T G +L +P +R
Sbjct: 9 FFTVGAASSLVWTQEAMTTQTISLQKAITIVEKHCPHDFLSSVVKTGRC---LYRGENMDSSTIVSARPDLLQPETYGN-EDALAYFQCIEDQLRGASVGALPSTGHIATTEKSEAARWGVPASVWPLGGDFQFVWPRSRRLIFP-GADR----------CPDNDLVLNQDLSVALKYPREILFATNATGQIEASSYLAIPGELDR 199
BLAST of EWM24026.1 vs. NCBI_GenBank
Match: gi|299470326|emb|CBN78376.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 91.6633 bits (226), Expect = 2.963e-18 Identity = 61/200 (30.50%), Postives = 92/200 (46.00%), Query Frame = 0
Query: 158 FLYRGENIN--------RPTLLKCPPDLMDVNTYQEGKEAAAFFAKMEEAMEG---LPVRPSLGHLATSDMRSAAAWGTPCSVWPLGNELHYAWLRDAKAFWPVRAEK-----------------RDISVDDIRACVKREIQVDQNLDMAVKMGHEVMLSTGEFG--------------FLVVPVAYEREVRARLGLGYE 315
LYRGE ++ P + PDL+D TY AA +F + M+ P RPS H+ S+ +AAAWGT CS+WPLG+ L Y+WL W R E+ RD D +R + ++++ L A++ HEV++ +GEF F+ +P + +R VR+ LG+ E
Sbjct: 31 LLYRGEALSLGGGGKGGGPRAVTEKPDLLDAETYGSAV-AAEYFRAADAIMDKDFQAPARPSNAHIMVSNKEAAAAWGTACSIWPLGDSLDYSWLHSCAELWDPRWERPGSRSSPPNGNREAFFWRD--EDGMRRFLAEGLRINSGLSEAIRGRHEVLVRSGEFSFGSEARKGAVIQDTFVCIPASEDRAVRSALGIPAE 227
BLAST of EWM24026.1 vs. NCBI_GenBank
Match: gi|551672095|ref|XP_005838804.1| (hypothetical protein GUITHDRAFT_150822 [Guillardia theta CCMP2712] >gi|428182965|gb|EKX51824.1| hypothetical protein GUITHDRAFT_150822 [Guillardia theta CCMP2712]) HSP 1 Score: 86.2705 bits (212), Expect = 3.432e-16 Identity = 56/178 (31.46%), Postives = 91/178 (51.12%), Query Frame = 0
Query: 138 IKQHCQGILRAYNETGATPVFLYRGENINRPTLLKCPPDLMDVNTYQEGKEAAAFFAKMEEAMEGLP-----VRPSLGHLATSDMRSAAAWGTPCSVWPLGNELHYAWLRDAKAFWPVRAEKRDISVDDIRACVKREIQVDQNLDMAVKMGHEVMLSTGEFGFLVVPVAYEREVRARL 310
I + C+ ++ A +G LYRG + +K DL+D TY G++ A FF ME+ ++ P VRPS GH+ ++D + AA WG S WP G+ Y WLR + F+P + + + R +R + VD+ LD A++ G E+M ++ + +VP + +R L
Sbjct: 76 IAKECRPMIEAVRRSGGH--LLYRGYDEATCKRVKEEADLLDPATY--GEDGARFFLAMEQWLKERPSFTRSVRPSCGHIGSADHKVAARWGIAHSCWPAGS-FSYGWLRGSDIFYPPSVDVGEENAGH-RDFFERNMVVDEGLDFALRHGKEIMFASDH--YWIVPSDCDGRIRELL 245 The following BLAST results are available for this feature:
BLAST of EWM24026.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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