EWM24026.1, cds6678 (CDS) Nannochloropsis gaditana

Overview
NameEWM24026.1
Unique Namecds6678
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:275362..275978 +
Alignment locationCM002469.1:276064..276143 +
Alignment locationCM002469.1:276304..276554 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24026.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100040g46.2024.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:275362..275978 +
CM002469.1supercontigCM002469.1:276064..276143 +
CM002469.1supercontigCM002469.1:276304..276554 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24026.1 vs. NCBI_GenBank
Match: gi|585105313|gb|EWM24026.1| (hypothetical protein Naga_100040g46 [Nannochloropsis gaditana])

HSP 1 Score: 656.751 bits (1693), Expect = 0.000e+0
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0
Query:    1 MVYSHSWSAFFAPPSSVSHVAMRANGGSWFSAHPSSSGSVHTTLLEKTRSQQSQRRQQKSIVGEEQSSSHHRRDLLRKALAFGGLLLGNTAVQTLSPWRQPLHLVTRFTDPASASELGGGMPQFEAQAMSTGRAAEFIKQHCQGILRAYNETGATPVFLYRGENINRPTLLKCPPDLMDVNTYQEGKEAAAFFAKMEEAMEGLPVRPSLGHLATSDMRSAAAWGTPCSVWPLGNELHYAWLRDAKAFWPVRAEKRDISVDDIRACVKREIQVDQNLDMAVKMGHEVMLSTGEFGFLVVPVAYEREVRARLGLGYE 315
            MVYSHSWSAFFAPPSSVSHVAMRANGGSWFSAHPSSSGSVHTTLLEKTRSQQSQRRQQKSIVGEEQSSSHHRRDLLRKALAFGGLLLGNTAVQTLSPWRQPLHLVTRFTDPASASELGGGMPQFEAQAMSTGRAAEFIKQHCQGILRAYNETGATPVFLYRGENINRPTLLKCPPDLMDVNTYQEGKEAAAFFAKMEEAMEGLPVRPSLGHLATSDMRSAAAWGTPCSVWPLGNELHYAWLRDAKAFWPVRAEKRDISVDDIRACVKREIQVDQNLDMAVKMGHEVMLSTGEFGFLVVPVAYEREVRARLGLGYE
Sbjct:    1 MVYSHSWSAFFAPPSSVSHVAMRANGGSWFSAHPSSSGSVHTTLLEKTRSQQSQRRQQKSIVGEEQSSSHHRRDLLRKALAFGGLLLGNTAVQTLSPWRQPLHLVTRFTDPASASELGGGMPQFEAQAMSTGRAAEFIKQHCQGILRAYNETGATPVFLYRGENINRPTLLKCPPDLMDVNTYQEGKEAAAFFAKMEEAMEGLPVRPSLGHLATSDMRSAAAWGTPCSVWPLGNELHYAWLRDAKAFWPVRAEKRDISVDDIRACVKREIQVDQNLDMAVKMGHEVMLSTGEFGFLVVPVAYEREVRARLGLGYE 315          
BLAST of EWM24026.1 vs. NCBI_GenBank
Match: gi|219125154|ref|XP_002182852.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405646|gb|EEC45588.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 97.8265 bits (242), Expect = 8.757e-21
Identity = 62/206 (30.10%), Postives = 103/206 (50.00%), Query Frame = 0
Query:  108 FTDPASASELGGGMPQFEAQAMSTGRAAEFIKQHC-QGILRAYNETGATPVFLYRGENINRPTLLKCPPDLMDVNTYQEGKEAAAFFAKMEEAMEGLPV--RPSLGHLATSDMRSAAAWGTPCSVWPLGNELHYAWLRDAKAFWPVRAEKRDISVDDIRACVKREIQVDQNLDMAVKMGHEVMLSTGEFG------FLVVPVAYER 304
            F    +AS L         Q +S  +A   +++HC    L +  +TG     LYRGEN++  T++   PDL+   TY   ++A A+F  +E+ + G  V   PS GH+AT++   AA WG P SVWPLG +  + W R  +  +P  A++          C   ++ ++Q+L +A+K   E++ +T   G      +L +P   +R
Sbjct:    9 FFTVGAASSLVWTQEAMTTQTISLQKAITIVEKHCPHDFLSSVVKTGRC---LYRGENMDSSTIVSARPDLLQPETYGN-EDALAYFQCIEDQLRGASVGALPSTGHIATTEKSEAARWGVPASVWPLGGDFQFVWPRSRRLIFP-GADR----------CPDNDLVLNQDLSVALKYPREILFATNATGQIEASSYLAIPGELDR 199          
BLAST of EWM24026.1 vs. NCBI_GenBank
Match: gi|299470326|emb|CBN78376.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 91.6633 bits (226), Expect = 2.963e-18
Identity = 61/200 (30.50%), Postives = 92/200 (46.00%), Query Frame = 0
Query:  158 FLYRGENIN--------RPTLLKCPPDLMDVNTYQEGKEAAAFFAKMEEAMEG---LPVRPSLGHLATSDMRSAAAWGTPCSVWPLGNELHYAWLRDAKAFWPVRAEK-----------------RDISVDDIRACVKREIQVDQNLDMAVKMGHEVMLSTGEFG--------------FLVVPVAYEREVRARLGLGYE 315
             LYRGE ++         P  +   PDL+D  TY     AA +F   +  M+     P RPS  H+  S+  +AAAWGT CS+WPLG+ L Y+WL      W  R E+                 RD   D +R  +   ++++  L  A++  HEV++ +GEF               F+ +P + +R VR+ LG+  E
Sbjct:   31 LLYRGEALSLGGGGKGGGPRAVTEKPDLLDAETYGSAV-AAEYFRAADAIMDKDFQAPARPSNAHIMVSNKEAAAAWGTACSIWPLGDSLDYSWLHSCAELWDPRWERPGSRSSPPNGNREAFFWRD--EDGMRRFLAEGLRINSGLSEAIRGRHEVLVRSGEFSFGSEARKGAVIQDTFVCIPASEDRAVRSALGIPAE 227          
BLAST of EWM24026.1 vs. NCBI_GenBank
Match: gi|551672095|ref|XP_005838804.1| (hypothetical protein GUITHDRAFT_150822 [Guillardia theta CCMP2712] >gi|428182965|gb|EKX51824.1| hypothetical protein GUITHDRAFT_150822 [Guillardia theta CCMP2712])

HSP 1 Score: 86.2705 bits (212), Expect = 3.432e-16
Identity = 56/178 (31.46%), Postives = 91/178 (51.12%), Query Frame = 0
Query:  138 IKQHCQGILRAYNETGATPVFLYRGENINRPTLLKCPPDLMDVNTYQEGKEAAAFFAKMEEAMEGLP-----VRPSLGHLATSDMRSAAAWGTPCSVWPLGNELHYAWLRDAKAFWPVRAEKRDISVDDIRACVKREIQVDQNLDMAVKMGHEVMLSTGEFGFLVVPVAYEREVRARL 310
            I + C+ ++ A   +G     LYRG +      +K   DL+D  TY  G++ A FF  ME+ ++  P     VRPS GH+ ++D + AA WG   S WP G+   Y WLR +  F+P   +  + +    R   +R + VD+ LD A++ G E+M ++    + +VP   +  +R  L
Sbjct:   76 IAKECRPMIEAVRRSGGH--LLYRGYDEATCKRVKEEADLLDPATY--GEDGARFFLAMEQWLKERPSFTRSVRPSCGHIGSADHKVAARWGIAHSCWPAGS-FSYGWLRGSDIFYPPSVDVGEENAGH-RDFFERNMVVDEGLDFALRHGKEIMFASDH--YWIVPSDCDGRIRELL 245          
The following BLAST results are available for this feature:
BLAST of EWM24026.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585105313|gb|EWM24026.1|0.000e+0100.00hypothetical protein Naga_100040g46 [Nannochlorops... [more]
gi|219125154|ref|XP_002182852.1|8.757e-2130.10predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|299470326|emb|CBN78376.1|2.963e-1830.50conserved unknown protein [Ectocarpus siliculosus][more]
gi|551672095|ref|XP_005838804.1|3.432e-1631.46hypothetical protein GUITHDRAFT_150822 [Guillardia... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6694rna6694Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications