EWM24020.1, cds6667 (CDS) Nannochloropsis gaditana

Overview
NameEWM24020.1
Unique Namecds6667
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:247410..250091 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24020.1
Productcentromere protein j
Orig transcript idgnl|cribi|Naga_100040g34.2018.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:247410..250091 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR026581TCP10_fam
IPR009852Tcp10_C_dom
Homology
BLAST of EWM24020.1 vs. NCBI_GenBank
Match: gi|585105307|gb|EWM24020.1| (centromere protein j [Nannochloropsis gaditana])

HSP 1 Score: 1813.89 bits (4697), Expect = 0.000e+0
Identity = 893/893 (100.00%), Postives = 893/893 (100.00%), Query Frame = 0
Query:    1 MPFHGTEDPLSPSRGLAHTPPRNKRTPRCAMGNESQPGDNTTPMLGMTAQMKNGQHESPSQSTPRSFLRKGSRREPSAMHRLKSGISPSPSSSSKPIPVTPSSTRKSKPARKRSERSPLALVSQARTRGTTTEAVRATDSKQGTAMEEPLPGRSSYPVPSPTEGYLGEGGGVGEETSWREERESKSTSQEKVEVREHSFDGNATKSFDPYWPPSAAGTAEAPDVMDGREWRMRLFHADSEEEDREGGGWDQEGGRCEDQASFLCSGSEMAAWQARHREEMTEFESLERALAGFPAISLQDGPEPWAANGVQGMGWTAAVDQEGRPAIVGEEAVEEEEEEEEEEEDDDDEEDEEDEMEPGHVGENLTADRGREDGKQRGKFQENRTKSHSNERFCEGNVGLPPPHPSFPSSLDTCLSCGSRRGSLLLKALENKQEEIERELARAEKETKAAEKQRRRSEAMLAEARSRKEQVEAWAARERAAVEKWREDQRELVGKEKKAFLREQAAATRCLEVQRALPTREERVEREALLATIEKMKLDAEGQRKRWAANSKRQAALIQEQQARLEELQGQVESAKTGTASPGLRSGIGPRGQNASSMSAARQPRNLPLPASSLSTGLRESRPCARVGARPLSHPTSASPLRLEKKALGAGHSMGVPPCSFLSRQGDGKAGAEEGTNAVQEGSSPGYPTSPRPYGVREYTVTPPSSAQSIIGCTSDLSWGGARTSPSAAIISERPPPFAPPYHYLHQGQELFRRPLPVAKQDSQPASGAEDSSSSVLTSEKKAKQPAASGKGGGGKTIRKLPDGREEWHYSNGTVKEVHPNGKSIVHFMNGDIKTVEAGTGDVVYWYAANQTKHITVAASGLEIFEFPSGQVERHYPNGVREIQPPGMGVINV 893
            MPFHGTEDPLSPSRGLAHTPPRNKRTPRCAMGNESQPGDNTTPMLGMTAQMKNGQHESPSQSTPRSFLRKGSRREPSAMHRLKSGISPSPSSSSKPIPVTPSSTRKSKPARKRSERSPLALVSQARTRGTTTEAVRATDSKQGTAMEEPLPGRSSYPVPSPTEGYLGEGGGVGEETSWREERESKSTSQEKVEVREHSFDGNATKSFDPYWPPSAAGTAEAPDVMDGREWRMRLFHADSEEEDREGGGWDQEGGRCEDQASFLCSGSEMAAWQARHREEMTEFESLERALAGFPAISLQDGPEPWAANGVQGMGWTAAVDQEGRPAIVGEEAVEEEEEEEEEEEDDDDEEDEEDEMEPGHVGENLTADRGREDGKQRGKFQENRTKSHSNERFCEGNVGLPPPHPSFPSSLDTCLSCGSRRGSLLLKALENKQEEIERELARAEKETKAAEKQRRRSEAMLAEARSRKEQVEAWAARERAAVEKWREDQRELVGKEKKAFLREQAAATRCLEVQRALPTREERVEREALLATIEKMKLDAEGQRKRWAANSKRQAALIQEQQARLEELQGQVESAKTGTASPGLRSGIGPRGQNASSMSAARQPRNLPLPASSLSTGLRESRPCARVGARPLSHPTSASPLRLEKKALGAGHSMGVPPCSFLSRQGDGKAGAEEGTNAVQEGSSPGYPTSPRPYGVREYTVTPPSSAQSIIGCTSDLSWGGARTSPSAAIISERPPPFAPPYHYLHQGQELFRRPLPVAKQDSQPASGAEDSSSSVLTSEKKAKQPAASGKGGGGKTIRKLPDGREEWHYSNGTVKEVHPNGKSIVHFMNGDIKTVEAGTGDVVYWYAANQTKHITVAASGLEIFEFPSGQVERHYPNGVREIQPPGMGVINV
Sbjct:    1 MPFHGTEDPLSPSRGLAHTPPRNKRTPRCAMGNESQPGDNTTPMLGMTAQMKNGQHESPSQSTPRSFLRKGSRREPSAMHRLKSGISPSPSSSSKPIPVTPSSTRKSKPARKRSERSPLALVSQARTRGTTTEAVRATDSKQGTAMEEPLPGRSSYPVPSPTEGYLGEGGGVGEETSWREERESKSTSQEKVEVREHSFDGNATKSFDPYWPPSAAGTAEAPDVMDGREWRMRLFHADSEEEDREGGGWDQEGGRCEDQASFLCSGSEMAAWQARHREEMTEFESLERALAGFPAISLQDGPEPWAANGVQGMGWTAAVDQEGRPAIVGEEAVEEEEEEEEEEEDDDDEEDEEDEMEPGHVGENLTADRGREDGKQRGKFQENRTKSHSNERFCEGNVGLPPPHPSFPSSLDTCLSCGSRRGSLLLKALENKQEEIERELARAEKETKAAEKQRRRSEAMLAEARSRKEQVEAWAARERAAVEKWREDQRELVGKEKKAFLREQAAATRCLEVQRALPTREERVEREALLATIEKMKLDAEGQRKRWAANSKRQAALIQEQQARLEELQGQVESAKTGTASPGLRSGIGPRGQNASSMSAARQPRNLPLPASSLSTGLRESRPCARVGARPLSHPTSASPLRLEKKALGAGHSMGVPPCSFLSRQGDGKAGAEEGTNAVQEGSSPGYPTSPRPYGVREYTVTPPSSAQSIIGCTSDLSWGGARTSPSAAIISERPPPFAPPYHYLHQGQELFRRPLPVAKQDSQPASGAEDSSSSVLTSEKKAKQPAASGKGGGGKTIRKLPDGREEWHYSNGTVKEVHPNGKSIVHFMNGDIKTVEAGTGDVVYWYAANQTKHITVAASGLEIFEFPSGQVERHYPNGVREIQPPGMGVINV 893          
BLAST of EWM24020.1 vs. NCBI_GenBank
Match: gi|553190732|ref|XP_005855247.1| (t-complex 10a-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293813|gb|EKU21113.1| t-complex 10a-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 509.22 bits (1310), Expect = 9.923e-173
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0
Query:  650 AGHSMGVPPCSFLSRQGDGKAGAEEGTNAVQEGSSPGYPTSPRPYGVREYTVTPPSSAQSIIGCTSDLSWGGARTSPSAAIISERPPPFAPPYHYLHQGQELFRRPLPVAKQDSQPASGAEDSSSSVLTSEKKAKQPAASGKGGGGKTIRKLPDGREEWHYSNGTVKEVHPNGKSIVHFMNGDIKTVEAGTGDVVYWYAANQTKHITVAASGLEIFEFPSGQVERHYPNGVREIQPPGMGVINV 893
            AGHSMGVPPCSFLSRQGDGKAGAEEGTNAVQEGSSPGYPTSPRPYGVREYTVTPPSSAQSIIGCTSDLSWGGARTSPSAAIISERPPPFAPPYHYLHQGQELFRRPLPVAKQDSQPASGAEDSSSSVLTSEKKAKQPAASGKGGGGKTIRKLPDGREEWHYSNGTVKEVHPNGKSIVHFMNGDIKTVEAGTGDVVYWYAANQTKHITVAASGLEIFEFPSGQVERHYPNGVREIQPPGMGVINV
Sbjct:    1 AGHSMGVPPCSFLSRQGDGKAGAEEGTNAVQEGSSPGYPTSPRPYGVREYTVTPPSSAQSIIGCTSDLSWGGARTSPSAAIISERPPPFAPPYHYLHQGQELFRRPLPVAKQDSQPASGAEDSSSSVLTSEKKAKQPAASGKGGGGKTIRKLPDGREEWHYSNGTVKEVHPNGKSIVHFMNGDIKTVEAGTGDVVYWYAANQTKHITVAASGLEIFEFPSGQVERHYPNGVREIQPPGMGVINV 244          
BLAST of EWM24020.1 vs. NCBI_GenBank
Match: gi|676384733|ref|XP_009035645.1| (hypothetical protein AURANDRAFT_15226, partial [Aureococcus anophagefferens] >gi|323453720|gb|EGB09591.1| hypothetical protein AURANDRAFT_15226, partial [Aureococcus anophagefferens])

HSP 1 Score: 95.5153 bits (236), Expect = 1.257e-19
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 0
Query:  799 RKLPDGREEWHYSNGTVKEVHPNGKSIVHFMNGDIKTVEAGTGDVVYWYAANQTKHITVAASGLEIFEFPSGQVERHYPNGVREIQPP 886
            R  PDG++E  Y NGT K V P+G   V F NGD+K+ +A TG VVY+YA+ QT H +     +EIFEFP+GQVE+H  +G ++I  P
Sbjct:    6 RTFPDGKKEVEYKNGTRKAVSPDGAVEVRFANGDVKSADAATGRVVYYYASAQTTHTSDPKRNIEIFEFPNGQVEKHNQDGSKDITFP 93          
BLAST of EWM24020.1 vs. NCBI_GenBank
Match: gi|1026967593|ref|XP_016610568.1| (hypothetical protein SPPG_02988 [Spizellomyces punctatus DAOM BR117] >gi|907097000|gb|KND02529.1| hypothetical protein SPPG_02988 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 94.7449 bits (234), Expect = 3.423e-16
Identity = 47/90 (52.22%), Postives = 60/90 (66.67%), Query Frame = 0
Query:  795 GKTIRKLPDGREEWHYSNGTVKEVHPNGKSIV-HFMNGDIKTVEAGTGDVVYWYAANQTKHITVAASGLEIFEFPSGQVERHYPNGVREI 883
            GK  R   +G +   YSNGT+KEVHP+ + IV HF NGD KTV A  G +VYWY   +T H T    GL+++EF +GQVE+HYP+G  EI
Sbjct:  581 GKLERIYANGIKLVRYSNGTLKEVHPDDELIVIHFTNGDSKTVFAD-GRIVYWYTEQRTLH-TTYKDGLQVYEFSNGQVEKHYPDGTNEI 668          
BLAST of EWM24020.1 vs. NCBI_GenBank
Match: gi|514688709|ref|XP_004991930.1| (hypothetical protein PTSG_06547 [Salpingoeca rosetta] >gi|326429903|gb|EGD75473.1| hypothetical protein PTSG_06547 [Salpingoeca rosetta])

HSP 1 Score: 94.3597 bits (233), Expect = 5.498e-16
Identity = 55/119 (46.22%), Postives = 68/119 (57.14%), Query Frame = 0
Query:  768 GAEDSSSSVLTSEKKAKQPAASGKGGGGKTIRKLPDGREEWHYSNGTVKEVHPNGKSIVHFMNGDIKTVEAGTGDVVYWYAANQTKHITVAASGLEIFEFPSGQVERHYPNGVREIQPP 886
            G E+++++  TS      P    + GGGK +R L DG  E  + NGTVK    +G   V F NGD K VE   G VVY Y   QT HIT    G E FEF +GQVE+H+ NGV+EIQ P
Sbjct:  987 GGEEATTTTPTS------PEHKRRSGGGKVVRVLEDGSTETTFRNGTVKVTRADGTVSVSFFNGDSKDVEL-DGTVVYRYHEAQTTHIT-KPDGSETFEFANGQVEKHHANGVKEIQFP 1097          
BLAST of EWM24020.1 vs. NCBI_GenBank
Match: gi|299470090|emb|CBN79267.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 93.9745 bits (232), Expect = 8.187e-16
Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 0
Query:  801 LPDGREEWHYSNGTVKEVHPNGKSIVHFMNGDIKTVEAGTGDVVYWYAANQTKHITVAASGLEIFEFPSGQVERHYPNGVREIQPP 886
            L DGR    ++NGT KE  P+G  +V F+NGD+K V   TG V+Y YAA +T H T+  SGLE+FEFP+GQVERH+  G +EI  P
Sbjct: 1549 LRDGRRVILFANGTQKETLPDGGCVVRFVNGDLKRVGGETGVVIYTYAAARTTH-TMHPSGLEVFEFPNGQVERHHKTGEKEIDFP 1633          
BLAST of EWM24020.1 vs. NCBI_GenBank
Match: gi|528892368|gb|EPZ32758.1| (T-complex protein 10 domain-containing protein [Rozella allomycis CSF55])

HSP 1 Score: 92.8189 bits (229), Expect = 1.065e-15
Identity = 45/93 (48.39%), Postives = 57/93 (61.29%), Query Frame = 0
Query:  795 GKTIRKLPDGREEWHYSNGTVKEVHPNGKSIVHFMNGDIKTVEAGTGDVVYWYAANQTKHITVAASGLEIFEFPSGQVERHYPNGVREIQPPG 887
            GK  R L DG     Y NGT+K+   N K+++ F N D+K +  G G+VVY+Y A +T H T+  SGLEI EF +GQVE  YPNG R I  P 
Sbjct:  454 GKRQRALDDGSLWTFYRNGTLKKDTLN-KTLIFFTNKDVKEINNGNGNVVYYYFATKTIHTTIKDSGLEIIEFRNGQVELLYPNGERHITFPN 545          
BLAST of EWM24020.1 vs. NCBI_GenBank
Match: gi|961123410|ref|XP_014783336.1| (PREDICTED: centromere protein J-like [Octopus bimaculoides])

HSP 1 Score: 91.2781 bits (225), Expect = 2.325e-15
Identity = 44/97 (45.36%), Postives = 63/97 (64.95%), Query Frame = 0
Query:  795 GKTIRKLPDGREEWHYSNGTVKEVHPNGKSI-VHFMNGDIKTVEAGTGDVVYWYAANQTKHITVAASGLEIFEFPSGQVERHYPNGVREIQPPGMGV 890
            GKT +   +G  E  +SNGT KE+  +GK I +HF NGDIK + A    V+Y+YA ++T  +T    GLE+ EFP+GQ+E+H+PNG ++I  P   V
Sbjct:  377 GKTEKVYQNGARELIFSNGTRKEMSADGKHIALHFFNGDIKQITADQT-VIYFYAESETL-VTTYPDGLEVLEFPTGQIEKHFPNGTQQITFPDQTV 471          
BLAST of EWM24020.1 vs. NCBI_GenBank
Match: gi|938058393|gb|KPP62011.1| (centromere protein J-like [Scleropages formosus])

HSP 1 Score: 90.8929 bits (224), Expect = 5.811e-15
Identity = 47/103 (45.63%), Postives = 63/103 (61.17%), Query Frame = 0
Query:  801 LPDGREEWHY---------SNGTVKEVHPNGKSI-VHFMNGDIKTVEAGTGDVVYWYAANQTKHITVAASGLEIFEFPSGQVERHYPNGVREIQPPGMGVINV 893
             PDG+ EW +         +NGT KE+  +GKSI + F NGD+K V A     VY+YA  QT HIT   SGLE+ +FP+ Q+E+H+PNG REI  P   V ++
Sbjct:  645 YPDGKTEWMFASGRRIVAFTNGTKKEISADGKSITIRFFNGDVKCVLADE-KAVYYYANTQTTHITYP-SGLEVLKFPNKQIEKHHPNGTREIIFPDGTVKHI 745          
BLAST of EWM24020.1 vs. NCBI_GenBank
Match: gi|918297432|gb|KOF73036.1| (hypothetical protein OCBIM_22038496mg [Octopus bimaculoides])

HSP 1 Score: 88.1965 bits (217), Expect = 8.176e-15
Identity = 44/97 (45.36%), Postives = 63/97 (64.95%), Query Frame = 0
Query:  795 GKTIRKLPDGREEWHYSNGTVKEVHPNGKSI-VHFMNGDIKTVEAGTGDVVYWYAANQTKHITVAASGLEIFEFPSGQVERHYPNGVREIQPPGMGV 890
            GKT +   +G  E  +SNGT KE+  +GK I +HF NGDIK + A    V+Y+YA ++T  +T    GLE+ EFP+GQ+E+H+PNG ++I  P   V
Sbjct:  225 GKTEKVYQNGARELIFSNGTRKEMSADGKHIALHFFNGDIKQITADQT-VIYFYAESETL-VTTYPDGLEVLEFPTGQIEKHFPNGTQQITFPDQTV 319          
The following BLAST results are available for this feature:
BLAST of EWM24020.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105307|gb|EWM24020.1|0.000e+0100.00centromere protein j [Nannochloropsis gaditana][more]
gi|553190732|ref|XP_005855247.1|9.923e-173100.00t-complex 10a-like protein, partial [Nannochlorops... [more]
gi|676384733|ref|XP_009035645.1|1.257e-1950.00hypothetical protein AURANDRAFT_15226, partial [Au... [more]
gi|1026967593|ref|XP_016610568.1|3.423e-1652.22hypothetical protein SPPG_02988 [Spizellomyces pun... [more]
gi|514688709|ref|XP_004991930.1|5.498e-1646.22hypothetical protein PTSG_06547 [Salpingoeca roset... [more]
gi|299470090|emb|CBN79267.1|8.187e-1653.49conserved unknown protein [Ectocarpus siliculosus][more]
gi|528892368|gb|EPZ32758.1|1.065e-1548.39T-complex protein 10 domain-containing protein [Ro... [more]
gi|961123410|ref|XP_014783336.1|2.325e-1545.36PREDICTED: centromere protein J-like [Octopus bima... [more]
gi|938058393|gb|KPP62011.1|5.811e-1545.63centromere protein J-like [Scleropages formosus][more]
gi|918297432|gb|KOF73036.1|8.176e-1545.36hypothetical protein OCBIM_22038496mg [Octopus bim... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6683rna6683Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications