EWM24025.1, cds6658 (CDS) Nannochloropsis gaditana

Overview
NameEWM24025.1
Unique Namecds6658
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:229701..229811 -
Alignment locationCM002469.1:229565..229629 -
Alignment locationCM002469.1:229031..229406 -
Alignment locationCM002469.1:228868..228941 -
Alignment locationCM002469.1:228505..228799 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24025.1
Productclusterin-associated protein 1
Orig transcript idgnl|cribi|Naga_100040g23.2023.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:229701..229811 -
CM002469.1supercontigCM002469.1:229565..229629 -
CM002469.1supercontigCM002469.1:229031..229406 -
CM002469.1supercontigCM002469.1:228868..228941 -
CM002469.1supercontigCM002469.1:228505..228799 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR019366Clusterin-associated_protein-1
Homology
BLAST of EWM24025.1 vs. NCBI_GenBank
Match: gi|585105312|gb|EWM24025.1| (clusterin-associated protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 617.461 bits (1591), Expect = 0.000e+0
Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 0
Query:    1 MTTLTSTEDVPSLRRTLESLQRQHAALDAEERMLELKVEEKKGELKRSEARLQSLQSVRPSLVEEHNMLEKELARQYDEYVRLYQNLDFLEQEVDSLRSAELAKQSRAERRIRCVQRRVQVEEERRQELVAGGGGPGKQEGGGGGKRGSRAMSDGDGRRRMKASERGAIKGYGKEAMEGQLFVMDYGDEVITDTKALNNVMDVKTSRGRRTSVSQPSPPTSTSSASPSMEHLKQYGHPPPLANRKFSTASSILEMGAKRSSPSSLGEGEEEDDDFSFLPGEEKEDGTEDIRDEDMEAVHEADDDNF 306
            MTTLTSTEDVPSLRRTLESLQRQHAALDAEERMLELKVEEKKGELKRSEARLQSLQSVRPSLVEEHNMLEKELARQYDEYVRLYQNLDFLEQEVDSLRSAELAKQSRAERRIRCVQRRVQVEEERRQELVAGGGGPGKQEGGGGGKRGSRAMSDGDGRRRMKASERGAIKGYGKEAMEGQLFVMDYGDEVITDTKALNNVMDVKTSRGRRTSVSQPSPPTSTSSASPSMEHLKQYGHPPPLANRKFSTASSILEMGAKRSSPSSLGEGEEEDDDFSFLPGEEKEDGTEDIRDEDMEAVHEADDDNF
Sbjct:    1 MTTLTSTEDVPSLRRTLESLQRQHAALDAEERMLELKVEEKKGELKRSEARLQSLQSVRPSLVEEHNMLEKELARQYDEYVRLYQNLDFLEQEVDSLRSAELAKQSRAERRIRCVQRRVQVEEERRQELVAGGGGPGKQEGGGGGKRGSRAMSDGDGRRRMKASERGAIKGYGKEAMEGQLFVMDYGDEVITDTKALNNVMDVKTSRGRRTSVSQPSPPTSTSSASPSMEHLKQYGHPPPLANRKFSTASSILEMGAKRSSPSSLGEGEEEDDDFSFLPGEEKEDGTEDIRDEDMEAVHEADDDNF 306          
BLAST of EWM24025.1 vs. NCBI_GenBank
Match: gi|942173664|ref|XP_006001611.2| (PREDICTED: clusterin-associated protein 1, partial [Latimeria chalumnae])

HSP 1 Score: 87.4261 bits (215), Expect = 6.775e-16
Identity = 52/141 (36.88%), Postives = 87/141 (61.70%), Query Frame = 0
Query:   12 SLRRTLESLQRQHAALD---AEERMLELKVEEKKGELKRSEARLQSLQSVRPSLVEEHNMLEKELARQYDEYVRLYQNLDFLEQEVDSLRSAELAKQSRAERRIRCVQRRVQVEEERRQELVAGGGGPGK-----QEGGGG 144
            +++ TLE++Q+    L+   ++E  LE K+E+KK EL+R++ RLQ+LQSVRP+ ++E+  +E++L +QY+ YV  + NL FLEQ++D     E  +    E  +R +Q +++ EE+R   L+  GG         QE GG 
Sbjct:  157 AIKDTLENIQKTKDMLNNIASDEANLEAKIEKKKQELERNQKRLQTLQSVRPAFMDEYEKIEEDLQKQYNIYVERFHNLAFLEQQLDDYHRMEQERFEETENALRMMQNKLKEEEKR---LMKSGGNDDDSDIEIQEDGGS 294          
BLAST of EWM24025.1 vs. NCBI_GenBank
Match: gi|1160095362|ref|XP_020376070.1| (clusterin-associated protein 1 isoform X2 [Rhincodon typus])

HSP 1 Score: 83.1889 bits (204), Expect = 2.903e-14
Identity = 45/116 (38.79%), Postives = 78/116 (67.24%), Query Frame = 0
Query:   13 LRRTLESLQRQHAALD---AEERMLELKVEEKKGELKRSEARLQSLQSVRPSLVEEHNMLEKELARQYDEYVRLYQNLDFLEQEVDSLRSAELAKQSRAERRIRCVQRRVQVEEER 125
            ++  +E +QR    L+   ++E  LE K+E+KK EL+RS+ RLQ+LQSVRP+ ++E+  +E+EL +QY+ YV  ++NL +LEQ+++ L   E  +    E  +R +Q +++ EE+R
Sbjct:  189 IKEIIEQVQRTKEMLNNVASDEANLEAKIEKKKMELERSKKRLQTLQSVRPAFMDEYEKIEEELQKQYETYVEKFRNLCYLEQQLEDLHRMEQERFEETENTLRLMQNKLKEEEKR 304          
BLAST of EWM24025.1 vs. NCBI_GenBank
Match: gi|958815806|ref|XP_014688633.1| (PREDICTED: clusterin-associated protein 1 isoform X2 [Equus asinus] >gi|958815809|ref|XP_014688634.1| PREDICTED: clusterin-associated protein 1 isoform X2 [Equus asinus])

HSP 1 Score: 83.1889 bits (204), Expect = 3.251e-14
Identity = 48/133 (36.09%), Postives = 84/133 (63.16%), Query Frame = 0
Query:   12 SLRRTLESLQRQHAALD---AEERMLELKVEEKKGELKRSEARLQSLQSVRPSLVEEHNMLEKELARQYDEYVRLYQNLDFLEQEVDSLRSAELAKQSRAERRIRCVQRRVQVEEERRQELVAGGGGPGKQEG 141
            +++  L  +Q+    L+   ++E  LE K+E++K EL+R+  RLQ+LQSVRP+ ++E+  +E+EL +QYD Y+  ++NL +LEQ+++     E  +   AE  +R +Q +++ EE+R   L+  GG PG  E 
Sbjct:  177 AIKDILAQVQKTKDLLNNVASDEANLEAKIEKRKLELERNRKRLQTLQSVRPAFMDEYEKIEEELQKQYDIYLEKFRNLAYLEQQLEDHHRMEQERFEEAENTLRLMQNKLKEEEKR---LLKSGGQPGAPEA 306          
BLAST of EWM24025.1 vs. NCBI_GenBank
Match: gi|958815803|ref|XP_014688632.1| (PREDICTED: clusterin-associated protein 1 isoform X1 [Equus asinus])

HSP 1 Score: 83.1889 bits (204), Expect = 3.340e-14
Identity = 48/133 (36.09%), Postives = 84/133 (63.16%), Query Frame = 0
Query:   12 SLRRTLESLQRQHAALD---AEERMLELKVEEKKGELKRSEARLQSLQSVRPSLVEEHNMLEKELARQYDEYVRLYQNLDFLEQEVDSLRSAELAKQSRAERRIRCVQRRVQVEEERRQELVAGGGGPGKQEG 141
            +++  L  +Q+    L+   ++E  LE K+E++K EL+R+  RLQ+LQSVRP+ ++E+  +E+EL +QYD Y+  ++NL +LEQ+++     E  +   AE  +R +Q +++ EE+R   L+  GG PG  E 
Sbjct:  188 AIKDILAQVQKTKDLLNNVASDEANLEAKIEKRKLELERNRKRLQTLQSVRPAFMDEYEKIEEELQKQYDIYLEKFRNLAYLEQQLEDHHRMEQERFEEAENTLRLMQNKLKEEEKR---LLKSGGQPGAPEA 317          
BLAST of EWM24025.1 vs. NCBI_GenBank
Match: gi|1160095360|ref|XP_020376069.1| (clusterin-associated protein 1 isoform X1 [Rhincodon typus])

HSP 1 Score: 82.8037 bits (203), Expect = 3.762e-14
Identity = 45/116 (38.79%), Postives = 78/116 (67.24%), Query Frame = 0
Query:   13 LRRTLESLQRQHAALD---AEERMLELKVEEKKGELKRSEARLQSLQSVRPSLVEEHNMLEKELARQYDEYVRLYQNLDFLEQEVDSLRSAELAKQSRAERRIRCVQRRVQVEEER 125
            ++  +E +QR    L+   ++E  LE K+E+KK EL+RS+ RLQ+LQSVRP+ ++E+  +E+EL +QY+ YV  ++NL +LEQ+++ L   E  +    E  +R +Q +++ EE+R
Sbjct:  189 IKEIIEQVQRTKEMLNNVASDEANLEAKIEKKKMELERSKKRLQTLQSVRPAFMDEYEKIEEELQKQYETYVEKFRNLCYLEQQLEDLHRMEQERFEETENTLRLMQNKLKEEEKR 304          
BLAST of EWM24025.1 vs. NCBI_GenBank
Match: gi|958815812|ref|XP_014688635.1| (PREDICTED: clusterin-associated protein 1 isoform X3 [Equus asinus])

HSP 1 Score: 82.8037 bits (203), Expect = 4.152e-14
Identity = 48/133 (36.09%), Postives = 84/133 (63.16%), Query Frame = 0
Query:   12 SLRRTLESLQRQHAALD---AEERMLELKVEEKKGELKRSEARLQSLQSVRPSLVEEHNMLEKELARQYDEYVRLYQNLDFLEQEVDSLRSAELAKQSRAERRIRCVQRRVQVEEERRQELVAGGGGPGKQEG 141
            +++  L  +Q+    L+   ++E  LE K+E++K EL+R+  RLQ+LQSVRP+ ++E+  +E+EL +QYD Y+  ++NL +LEQ+++     E  +   AE  +R +Q +++ EE+R   L+  GG PG  E 
Sbjct:  188 AIKDILAQVQKTKDLLNNVASDEANLEAKIEKRKLELERNRKRLQTLQSVRPAFMDEYEKIEEELQKQYDIYLEKFRNLAYLEQQLEDHHRMEQERFEEAENTLRLMQNKLKEEEKR---LLKSGGQPGAPEA 317          
BLAST of EWM24025.1 vs. NCBI_GenBank
Match: gi|1083283735|ref|XP_018590395.1| (PREDICTED: clusterin-associated protein 1 isoform X3 [Scleropages formosus])

HSP 1 Score: 82.0333 bits (201), Expect = 4.760e-14
Identity = 45/118 (38.14%), Postives = 79/118 (66.95%), Query Frame = 0
Query:   12 SLRRTLESLQRQHAALD---AEERMLELKVEEKKGELKRSEARLQSLQSVRPSLVEEHNMLEKELARQYDEYVRLYQNLDFLEQEVDSLRSAELAKQSRAERRIRCVQRRVQVEEERR 126
            +++  LE++Q+    L+   ++E  LE K+E+KK EL+R++ RLQ+LQSVRP+ ++E+  +E+EL + Y+ YV  ++NL FLEQ+++     E  +    E  +R +Q +++ EEERR
Sbjct:  139 AIKEVLENVQKTKDTLNNVSSDEASLEAKIEKKKQELERNQKRLQTLQSVRPAFMDEYEKIEEELQKHYETYVEKFRNLSFLEQQLEDYHRMEQERFEETENTLRAMQNKLR-EEERR 255          
BLAST of EWM24025.1 vs. NCBI_GenBank
Match: gi|1072241557|ref|XP_018417516.1| (PREDICTED: clusterin-associated protein 1 [Nanorana parkeri])

HSP 1 Score: 82.0333 bits (201), Expect = 5.639e-14
Identity = 48/119 (40.34%), Postives = 77/119 (64.71%), Query Frame = 0
Query:   12 SLRRTLESLQRQHAALD---AEERMLELKVEEKKGELKRSEARLQSLQSVRPSLVEEHNMLEKELARQYDEYVRLYQNLDFLEQEVDSLRSAELAKQSRAERRIRCVQRRVQVEEERRQ 127
            S++  LE  Q+    L    ++E  LE K+E++K EL+R+ +RLQ+LQSVRP+ ++E+  LE+EL +QY+ YV  Y+NL FLEQ+++     E  +   AE  +R +Q +++ EE R Q
Sbjct:  188 SIKEVLEQCQKMKDFLANGASDEENLEAKIEKRKKELERNRSRLQTLQSVRPAFMDEYEKLEEELQKQYEIYVDKYRNLCFLEQQLEDHHRVEQERFEEAENTLRMMQNKLRDEENRLQ 306          
BLAST of EWM24025.1 vs. NCBI_GenBank
Match: gi|565315199|gb|ETE67140.1| (Clusterin-associated protein 1 [Ophiophagus hannah])

HSP 1 Score: 82.0333 bits (201), Expect = 5.760e-14
Identity = 48/127 (37.80%), Postives = 82/127 (64.57%), Query Frame = 0
Query:    4 LTSTEDV--PSLRRTLESLQRQHAALD---AEERMLELKVEEKKGELKRSEARLQSLQSVRPSLVEEHNMLEKELARQYDEYVRLYQNLDFLEQEVDSLRSAELAKQSRAERRIRCVQRRVQVEEER 125
            +  TE V   +++  LE +Q+ +  L+   A+E  LE K+E++K EL+R+  RLQ+LQSVRP+ ++E+  +E+EL +QY  YV  ++NL +LEQ++D     E  +   AE  +R +Q +++ EE+R
Sbjct:  140 INETEKVMRVAIKDILEQVQKTNDMLNNVAADEASLEAKIEKRKSELERNHKRLQTLQSVRPAFMDEYEKIEEELQKQYSCYVEKFRNLTYLEQQLDDQHRMEQERFEEAENTLRLMQNKLKEEEKR 266          
The following BLAST results are available for this feature:
BLAST of EWM24025.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105312|gb|EWM24025.1|0.000e+0100.00clusterin-associated protein 1 [Nannochloropsis ga... [more]
gi|942173664|ref|XP_006001611.2|6.775e-1636.88PREDICTED: clusterin-associated protein 1, partial... [more]
gi|1160095362|ref|XP_020376070.1|2.903e-1438.79clusterin-associated protein 1 isoform X2 [Rhincod... [more]
gi|958815806|ref|XP_014688633.1|3.251e-1436.09PREDICTED: clusterin-associated protein 1 isoform ... [more]
gi|958815803|ref|XP_014688632.1|3.340e-1436.09PREDICTED: clusterin-associated protein 1 isoform ... [more]
gi|1160095360|ref|XP_020376069.1|3.762e-1438.79clusterin-associated protein 1 isoform X1 [Rhincod... [more]
gi|958815812|ref|XP_014688635.1|4.152e-1436.09PREDICTED: clusterin-associated protein 1 isoform ... [more]
gi|1083283735|ref|XP_018590395.1|4.760e-1438.14PREDICTED: clusterin-associated protein 1 isoform ... [more]
gi|1072241557|ref|XP_018417516.1|5.639e-1440.34PREDICTED: clusterin-associated protein 1 [Nanoran... [more]
gi|565315199|gb|ETE67140.1|5.760e-1437.80Clusterin-associated protein 1 [Ophiophagus hannah... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6674rna6674Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications