EWM24013.1, cds6657 (CDS) Nannochloropsis gaditana

Overview
NameEWM24013.1
Unique Namecds6657
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:228382..228399 -
Alignment locationCM002469.1:228208..228216 -
Alignment locationCM002469.1:227737..227821 -
Alignment locationCM002469.1:227513..227585 -
Alignment locationCM002469.1:227349..227433 -
Alignment locationCM002469.1:226940..227198 -
Alignment locationCM002469.1:226653..226743 -
Alignment locationCM002469.1:226481..226595 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24013.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100040g22.2011.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:228382..228399 -
CM002469.1supercontigCM002469.1:228208..228216 -
CM002469.1supercontigCM002469.1:227737..227821 -
CM002469.1supercontigCM002469.1:227513..227585 -
CM002469.1supercontigCM002469.1:227349..227433 -
CM002469.1supercontigCM002469.1:226940..227198 -
CM002469.1supercontigCM002469.1:226653..226743 -
CM002469.1supercontigCM002469.1:226481..226595 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24013.1 vs. NCBI_GenBank
Match: gi|585105300|gb|EWM24013.1| (hypothetical protein Naga_100040g22 [Nannochloropsis gaditana])

HSP 1 Score: 506.138 bits (1302), Expect = 0.000e+0
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0
Query:    1 MHPFISKGEVSTTAIIMEEKRDALSVKQQVVDLAVAEGVRAAVGAGCLSGLGVFAAHKYSPWFNKSLGISGKVGTVMIAITGSFFLFSELVLIDAQRHPQAYGFMDTPALTAAPTDAAKPDAEKREKDEGLGMIHIKPRYVYATVANHLYDHPFQMLVALSTPIIGGFFYTEMQKPGLKLSQRIIHTRVQGQASVILILALTMGFRDQCVRLELYFCGTKGSIGREVVQNEAKDSYIQGRTSNI 244
            MHPFISKGEVSTTAIIMEEKRDALSVKQQVVDLAVAEGVRAAVGAGCLSGLGVFAAHKYSPWFNKSLGISGKVGTVMIAITGSFFLFSELVLIDAQRHPQAYGFMDTPALTAAPTDAAKPDAEKREKDEGLGMIHIKPRYVYATVANHLYDHPFQMLVALSTPIIGGFFYTEMQKPGLKLSQRIIHTRVQGQASVILILALTMGFRDQCVRLELYFCGTKGSIGREVVQNEAKDSYIQGRTSNI
Sbjct:    1 MHPFISKGEVSTTAIIMEEKRDALSVKQQVVDLAVAEGVRAAVGAGCLSGLGVFAAHKYSPWFNKSLGISGKVGTVMIAITGSFFLFSELVLIDAQRHPQAYGFMDTPALTAAPTDAAKPDAEKREKDEGLGMIHIKPRYVYATVANHLYDHPFQMLVALSTPIIGGFFYTEMQKPGLKLSQRIIHTRVQGQASVILILALTMGFRDQCVRLELYFCGTKGSIGREVVQNEAKDSYIQGRTSNI 244          
BLAST of EWM24013.1 vs. NCBI_GenBank
Match: gi|669142644|ref|XP_008606884.1| (hypothetical protein SDRG_03045 [Saprolegnia diclina VS20] >gi|530741370|gb|EQC39612.1| hypothetical protein SDRG_03045 [Saprolegnia diclina VS20])

HSP 1 Score: 114.775 bits (286), Expect = 3.249e-28
Identity = 69/198 (34.85%), Postives = 108/198 (54.55%), Query Frame = 0
Query:   10 VSTTAIIMEEKRDALSVKQQVVDLAVAEGVRAAVGAGCLSGLGVFAAHKYSPWFNKSLGISGKVGTVMIAITGSFFLFSELVLIDAQRHPQAYGFMDTPALTAAPTDAAKPDAEKREKDEGLGMIHIKPRYVYATVANHLYDHPFQMLVALSTPIIGGFFYTEMQKPGLKLSQRIIHTRVQGQASVILILALTMGFRD 207
            +S++ +    KRDA      ++  +  +G++AA  AG  +G  V  AH  SPWF   LG+SGKVG  ++A   SF + +E  L+   R+P AY  +       AP  AAKPD             H  P  ++   AN++YD+PF+ LV  +TP++G  F+ + +   ++ SQ+I+HTR+ GQ S +++L  TM F D
Sbjct:    1 MSSSPLSPNAKRDA------IISNSTTQGIKAAAIAGVTAGSLVAVAHHQSPWFRNRLGVSGKVGLAVMASLASFAIVAEQDLLRGSRNPDAY--LAELLEDNAPI-AAKPD-------------HHLP--LHQRAANYVYDYPFRTLVCSATPLVGLIFFDQSRNANIQFSQKIMHTRIYGQGSCVVLLLGTMAFHD 174          
BLAST of EWM24013.1 vs. NCBI_GenBank
Match: gi|813126677|ref|XP_012197102.1| (hypothetical protein SPRG_03119 [Saprolegnia parasitica CBS 223.65] >gi|641538069|gb|KDO31903.1| hypothetical protein SPRG_03119 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 113.235 bits (282), Expect = 4.668e-27
Identity = 67/188 (35.64%), Postives = 103/188 (54.79%), Query Frame = 0
Query:   20 KRDALSVKQQVVDLAVAEGVRAAVGAGCLSGLGVFAAHKYSPWFNKSLGISGKVGTVMIAITGSFFLFSELVLIDAQRHPQAYGFMDTPALTAAPTDAAKPDAEKREKDEGLGMIHIKPRYVYATVANHLYDHPFQMLVALSTPIIGGFFYTEMQKPGLKLSQRIIHTRVQGQASVILILALTMGFRD 207
            KRDA      ++  +  +G++AA  AG  +G  V  AH  SPWF   LG+SGKVG  ++A   SF + +E  L+   R+P AY  +       AP  AAKPD             H  P  ++   AN++YD+PF+ LV  +TP++G  F+ + +   ++ SQ+++HTR+ GQ S +++L  TM F D
Sbjct:   50 KRDA------IISNSTTQGIKAAAIAGVTAGSLVAVAHHQSPWFRNRLGVSGKVGLAVMASLASFAIVAEQDLLRGSRNPDAY--LAELHEDNAPI-AAKPD-------------HHLP--LHQRAANYVYDYPFRTLVCSATPLVGLIFFDQSRNANIQFSQKVMHTRIYGQGSCVVLLLGTMAFHD 213          
BLAST of EWM24013.1 vs. NCBI_GenBank
Match: gi|1173937496|gb|OQR88271.1| (hypothetical protein ACHHYP_06983 [Achlya hypogyna])

HSP 1 Score: 111.309 bits (277), Expect = 7.843e-27
Identity = 65/198 (32.83%), Postives = 105/198 (53.03%), Query Frame = 0
Query:   10 VSTTAIIMEEKRDALSVKQQVVDLAVAEGVRAAVGAGCLSGLGVFAAHKYSPWFNKSLGISGKVGTVMIAITGSFFLFSELVLIDAQRHPQAYGFMDTPALTAAPTDAAKPDAEKREKDEGLGMIHIKPRYVYATVANHLYDHPFQMLVALSTPIIGGFFYTEMQKPGLKLSQRIIHTRVQGQASVILILALTMGFRD 207
            +S++ +    KRD       ++  +  EG++AA  AG  +G  V AAH  SPWF   LG+SGKVG  ++A   SF + +E  L+   R+P  Y          A  + A+   EK+  D  L + H         +AN +YD+PF+ L   + P++G  F+ + +   ++ SQ+I+HTR+ GQ + +++L  TMGF D
Sbjct:    1 MSSSPLSATAKRDV------IISNSTTEGLKAAAIAGVTAGSLVAAAHHQSPWFRNRLGVSGKVGLAVMASLASFAIVAEQDLLKGSRNPDQY---------IAELNQAEAPIEKKS-DHHLALHH--------RLANFVYDYPFRTLAFSAAPLVGLIFFDQSRNTNIQFSQKIMHTRIYGQGACVVLLLSTMGFHD 174          
BLAST of EWM24013.1 vs. NCBI_GenBank
Match: gi|299472452|emb|CBN79726.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 109.768 bits (273), Expect = 6.732e-26
Identity = 69/194 (35.57%), Postives = 103/194 (53.09%), Query Frame = 0
Query:   22 DALSVKQQVVDLAVAEGVRAAVGAGCLSGLGVFAAHKYSPWFNKSLGISGKVGTVMIAITGSFFLF----SELVLIDAQRHPQAYGFMDTPALTAAPTDAAKPDAEKREKDEGLGMIHIKPRYVYATVANHLYDHPFQMLVALSTPIIGGFFYTEMQKPGLKLSQRIIHTRVQGQASVILILALTMGFRDQCVR 211
            DA   + +V+ LA  EG++A   AG LS  GV AA+K+SPWF KS  +S K     +A++  FFLF    +ELV+  A   P AYG +D    +   T  +K    ++E +                +AN  Y +PF+M+V +  P +GG  Y+   +  LKLSQ++IHTRV GQ +V+ +    M F++   R
Sbjct:    8 DATEKRGRVLRLAQEEGMKAGGLAGLLSCAGVVAANKFSPWFRKSTSVSAKTA---LAVS-PFFLFYLLRTELVMHGANHDPHAYGIVDDVVGSDDTTRKSKILQPRKELNAA------------QQLANWCYVNPFKMVVGMGVPAVGGILYSMRNEGNLKLSQKLIHTRVYGQMTVVSMAVAMMAFQETMRR 185          
BLAST of EWM24013.1 vs. NCBI_GenBank
Match: gi|669142640|ref|XP_008606882.1| (hypothetical protein SDRG_03043 [Saprolegnia diclina VS20] >gi|530741368|gb|EQC39610.1| hypothetical protein SDRG_03043 [Saprolegnia diclina VS20])

HSP 1 Score: 104.76 bits (260), Expect = 2.548e-24
Identity = 58/188 (30.85%), Postives = 94/188 (50.00%), Query Frame = 0
Query:   22 DALSVKQQVVDLAVAEGVRAAVGAGCLSGLGVFAAHKYSPWFNKSLGISGKVGTVMIAITGSFFLFSELVLIDAQRHPQAY--GFMDTPALTAAPTDAAKPDAEKREKDEGLGMIHIKPRYVYATVANHLYDHPFQMLVALSTPIIGGFFYTEMQKPGLKLSQRIIHTRVQGQASVILILALTMGFRD 207
            DA   +  ++  +   G++A+  AG  +G  V  AH  SPWF   LG+SGKVG  ++A   +F + +E  L+   R+P AY     +T       +D   P                    +Y   AN++YD+PF+ LV  + P++G  F  + +   ++ SQ+I+HTR+ GQ S +++L  TM F D
Sbjct:    2 DATQKRDIIISNSTTSGLKASAIAGVTAGSLVTLAHHQSPWFRNRLGVSGKVGLAVMASLATFAIVAEQDLLKGSRNPDAYIAELNETETKQVIKSDNHLP--------------------LYQQAANYVYDYPFRTLVCSAAPLVGLIFLDQSRNANIQFSQKIMHTRIYGQGSCVVLLLGTMAFHD 169          
BLAST of EWM24013.1 vs. NCBI_GenBank
Match: gi|1173937512|gb|OQR88287.1| (hypothetical protein ACHHYP_06981 [Achlya hypogyna])

HSP 1 Score: 103.99 bits (258), Expect = 4.876e-24
Identity = 57/186 (30.65%), Postives = 96/186 (51.61%), Query Frame = 0
Query:   22 DALSVKQQVVDLAVAEGVRAAVGAGCLSGLGVFAAHKYSPWFNKSLGISGKVGTVMIAITGSFFLFSELVLIDAQRHPQAYGFMDTPALTAAPTDAAKPDAEKREKDEGLGMIHIKPRYVYATVANHLYDHPFQMLVALSTPIIGGFFYTEMQKPGLKLSQRIIHTRVQGQASVILILALTMGFRD 207
            DA + +  ++  +  EG++A+  A   +G  V  AH  SPWF   LG+SGKVG  ++A   +F + +E  L+   R+P  Y                  +    E ++ +   H  P  +Y   AN++YD+PF+ LV  + P++G  F  + +   ++ SQ+I+HTR+ GQ S +++L  TM F D
Sbjct:    2 DAHTKRDIIISNSTTEGLKASAVAAVTAGSLVTLAHHQSPWFRNRLGVSGKVGLAVMASLATFAIVAEQDLLRGSRNPDQY----------------IAELNNTETEKVVTSDHHLP--LYQQAANYVYDYPFRTLVCSAAPLVGLIFLDQSRNANIQFSQKIMHTRIYGQGSCVVLLLGTMAFHD 169          
BLAST of EWM24013.1 vs. NCBI_GenBank
Match: gi|813126683|ref|XP_012197104.1| (hypothetical protein SPRG_03121 [Saprolegnia parasitica CBS 223.65] >gi|641538071|gb|KDO31905.1| hypothetical protein SPRG_03121 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 103.219 bits (256), Expect = 8.037e-24
Identity = 56/186 (30.11%), Postives = 97/186 (52.15%), Query Frame = 0
Query:   22 DALSVKQQVVDLAVAEGVRAAVGAGCLSGLGVFAAHKYSPWFNKSLGISGKVGTVMIAITGSFFLFSELVLIDAQRHPQAYGFMDTPALTAAPTDAAKPDAEKREKDEGLGMIHIKPRYVYATVANHLYDHPFQMLVALSTPIIGGFFYTEMQKPGLKLSQRIIHTRVQGQASVILILALTMGFRD 207
            DA   +  +++ +   G++A+  AG  +G  V  A+  SPWF   LG+SGKVG  ++A   +F + +E  L+   R+P AY                  +  + E  + +   H  P  +Y   AN++YD+PF+ LV  + P++G  F  + +   ++ SQ+++HTR+ GQ S +++L  TM F D
Sbjct:    2 DATQKRDIIINNSTTSGLKASAIAGVTAGSLVALANHQSPWFRNRLGVSGKVGLAVMASLATFAIVAEQDLLKGSRNPDAY----------------IAELNETETKQVIKSDHHLP--MYQQAANYVYDYPFRTLVCSAAPLVGLIFLDQSRNANIQFSQKVMHTRIYGQGSCVVLLLGTMAFHD 169          
BLAST of EWM24013.1 vs. NCBI_GenBank
Match: gi|1173955052|gb|OQS02127.1| (hypothetical protein THRCLA_05480 [Thraustotheca clavata])

HSP 1 Score: 107.457 bits (267), Expect = 8.165e-24
Identity = 67/210 (31.90%), Postives = 112/210 (53.33%), Query Frame = 0
Query:    1 MHPFI-SKGEVSTTAIIM--EEKRDALSVKQQVVDLAVAEGVRAAVGAGCLSGLGVFAAHKYSPWFNKSLGISGKVGTVMIAITGSFFLFSELVLIDAQRHPQAYGFMDTPALTAAPTDAAKPDAEKREKDEGLGMIHIKPRYVYATVANHLYDHPFQMLVALSTPIIGGFFYTEMQKPGLKLSQRIIHTRVQGQASVILILALTMGFRD 207
            MH  I  +G    + IIM  E KRD ++        ++A G++A+  +    G  V+AA++ SP F   LG+SGK+G V +A  GSFF+  E  L+   R+P AY             D     AE+ ++   L +    P+     VAN++YD+PF+ L   +TP++   ++ + +   +++SQ+I+HTR+ GQ + +++L  TM F D
Sbjct:  154 MHTRIYGQGASDHSVIIMSVESKRDIITAN------SLAVGLQASAVSSLAMGAIVYAANQVSPTFRNRLGLSGKIGFVAMAGLGSFFIAGEQDLLKGSRNPDAY-----------IADLEGKKAEQSQQKSSLSL----PK----QVANYVYDNPFRTLAMTATPLVAAIYWDQSRNAHIQVSQKIMHTRIYGQGACVVLLLSTMAFHD 338          

HSP 2 Score: 78.5666 bits (192), Expect = 2.380e-13
Identity = 50/175 (28.57%), Postives = 87/175 (49.71%), Query Frame = 0
Query:   22 DALSVKQQVVDLAVAEGVRAAVGAGCLSGLGVFAAHKYSPWFNKSLGISGKVGTVMIAITGSFFLFSELVLIDAQRHPQAY--GFMDTPALTAAPTDAAKPDAEKREKDEGLGMIHIKPRYVYATVANHLYDHPFQMLVALSTPIIGGFFYTEMQKPGLKLSQRIIHTRVQGQAS 194
            DA + +  V+  +  +G++A   A  ++G  V  A+  S WF   LG+SGKVG  ++A   +F + SE  L+   R+P  +      T ++     D   P                    +Y   AN++YD+PF+ LV+ + P++G  FY + +   ++ SQ+I+HTR+ GQ +
Sbjct:    9 DAKTKRDIVITHSTTQGLKAGGVAAVVAGSAVALANNQSQWFRNRLGVSGKVGLAVMASLATFAIVSEQDLLRGSRNPDQFIAEMNQTESVQVKKADHHLP--------------------LYQQAANYVYDYPFRTLVSSAVPLVGLIFYEQSRNANIQFSQKIMHTRIYGQGA 163          
BLAST of EWM24013.1 vs. NCBI_GenBank
Match: gi|813126680|ref|XP_012197103.1| (hypothetical protein SPRG_03120 [Saprolegnia parasitica CBS 223.65] >gi|641538070|gb|KDO31904.1| hypothetical protein SPRG_03120 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 103.219 bits (256), Expect = 1.044e-23
Identity = 62/188 (32.98%), Postives = 101/188 (53.72%), Query Frame = 0
Query:   20 KRDALSVKQQVVDLAVAEGVRAAVGAGCLSGLGVFAAHKYSPWFNKSLGISGKVGTVMIAITGSFFLFSELVLIDAQRHPQAYGFMDTPALTAAPTDAAKPDAEKREKDEGLGMIHIKPRYVYATVANHLYDHPFQMLVALSTPIIGGFFYTEMQKPGLKLSQRIIHTRVQGQASVILILALTMGFRD 207
            KRD ++    VV      G++A+V +    G  V+AA++ S  F   LG+SGK+G V +A    FF+  E  L+   R+P AY        TAA T+ A P        + LG+ H         +AN++YD+PF+ L  ++TP++G  +  + +   ++ SQ+I+HTR+ GQ + +++L  TM F D
Sbjct:    7 KRDIITANSLVV------GLQASVVSAATMGAVVYAANQTSATFRNRLGLSGKLGFVAMAGLAGFFIAGEQDLLKGSRNPDAYIAELEGNTTAAMTNVASPR-------KSLGLHH--------QLANYIYDNPFRSLTCMATPLVGFIYLDQSRNANIQFSQKIMHTRIYGQGACVVLLLSTMAFHD 173          
The following BLAST results are available for this feature:
BLAST of EWM24013.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105300|gb|EWM24013.1|0.000e+0100.00hypothetical protein Naga_100040g22 [Nannochlorops... [more]
gi|669142644|ref|XP_008606884.1|3.249e-2834.85hypothetical protein SDRG_03045 [Saprolegnia dicli... [more]
gi|813126677|ref|XP_012197102.1|4.668e-2735.64hypothetical protein SPRG_03119 [Saprolegnia paras... [more]
gi|1173937496|gb|OQR88271.1|7.843e-2732.83hypothetical protein ACHHYP_06983 [Achlya hypogyna... [more]
gi|299472452|emb|CBN79726.1|6.732e-2635.57conserved unknown protein [Ectocarpus siliculosus][more]
gi|669142640|ref|XP_008606882.1|2.548e-2430.85hypothetical protein SDRG_03043 [Saprolegnia dicli... [more]
gi|1173937512|gb|OQR88287.1|4.876e-2430.65hypothetical protein ACHHYP_06981 [Achlya hypogyna... [more]
gi|813126683|ref|XP_012197104.1|8.037e-2430.11hypothetical protein SPRG_03121 [Saprolegnia paras... [more]
gi|1173955052|gb|OQS02127.1|8.165e-2431.90hypothetical protein THRCLA_05480 [Thraustotheca c... [more]
gi|813126680|ref|XP_012197103.1|1.044e-2332.98hypothetical protein SPRG_03120 [Saprolegnia paras... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6673rna6673Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications