EWM24036.1, cds6656 (CDS) Nannochloropsis gaditana

Overview
NameEWM24036.1
Unique Namecds6656
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002469.1:225783..226094 -
Alignment locationCM002469.1:224742..225392 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24036.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100040g21.2034.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002469.1supercontigCM002469.1:225783..226094 -
CM002469.1supercontigCM002469.1:224742..225392 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24036.1 vs. NCBI_GenBank
Match: gi|585105323|gb|EWM24036.1| (hypothetical protein Naga_100040g21 [Nannochloropsis gaditana])

HSP 1 Score: 652.129 bits (1681), Expect = 0.000e+0
Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0 
Query:    1 MSACLLFIPYPDDNVYMTEQRSTLNYLRAGVTRSLKALEKKIHTCVSPGHPVRRATLELKAYPHEILFFSLCRVGVMRTISTLVALSAIVGCSAFLAPMPAPRQLTRVHAGASAGGDDDWKNIINSEANLASYLSEEGFRYCLNKTPEELEKEGDYNIFEKMFGATSNNAARMAARSFGRSLTIDAYDAKKAAENKEWVAKYGYKRWVTSYVDKSDLETEKGAAPAAVAASAKKAAPPAQPRKPAFSFPKFGGQVAASTPGPAKKSSPVKVTAAAKPAAAKPAPTPKAAAPKAKAAAPTGPLSGKPQAQGKGNLNLLKKK 320
            MSACLLFIPYPDDNVYMTEQRSTLNYLRAGVTRSLKALEKKIHTCVSPGHPVRRATLELKAYPHEILFFSLCRVGVMRTISTLVALSAIVGCSAFLAPMPAPRQLTRVHAGASAGGDDDWKNIINSEANLASYLSEEGFRYCLNKTPEELEKEGDYNIFEKMFGATSNNAARMAARSFGRSLTIDAYDAKKAAENKEWVAKYGYKRWVTSYVDKSDLETEKGAAPAAVAASAKKAAPPAQPRKPAFSFPKFGGQVAASTPGPAKKSSPVKVTAAAKPAAAKPAPTPKAAAPKAKAAAPTGPLSGKPQAQGKGNLNLLKKK
Sbjct:    1 MSACLLFIPYPDDNVYMTEQRSTLNYLRAGVTRSLKALEKKIHTCVSPGHPVRRATLELKAYPHEILFFSLCRVGVMRTISTLVALSAIVGCSAFLAPMPAPRQLTRVHAGASAGGDDDWKNIINSEANLASYLSEEGFRYCLNKTPEELEKEGDYNIFEKMFGATSNNAARMAARSFGRSLTIDAYDAKKAAENKEWVAKYGYKRWVTSYVDKSDLETEKGAAPAAVAASAKKAAPPAQPRKPAFSFPKFGGQVAASTPGPAKKSSPVKVTAAAKPAAAKPAPTPKAAAPKAKAAAPTGPLSGKPQAQGKGNLNLLKKK 320
[Close]
BLAST of EWM24036.1 vs. NCBI_GenBank
Match: gi|299471518|emb|CBN80004.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 78.1814 bits (191), Expect = 2.334e-13
Identity = 46/108 (42.59%), Postives = 62/108 (57.41%), Query Frame = 0 
Query:  122 NIINSEANLASYLSEEGFRYCLNKTPEELEKEGDYNIFEKMFGATSNNAARMAARSFGRSLTIDAYDAKKAAENKEWVAKYGYKRWVTSYVDKSDLETEKGAAPAAVA 229
            + I SE  L  YL E+G RY ++KT +E+ +EGDY + EK+FG TSNNA RM  ++    +   A      +  K W  KYGY R+   YVDKS L ++   APA  A
Sbjct:   53 DFIPSEEWLGEYLGEQGLRYRMDKTEKEVAEEGDYTLLEKIFGQTSNNAERMKLKA---EVLAKADIPTNPSLYKTWTEKYGYGRFFPVYVDKSGL-SDDTPAPAKAA 156
The following BLAST results are available for this feature:
BLAST of EWM24036.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105323|gb|EWM24036.1|0.000e+0100.00hypothetical protein Naga_100040g21 [Nannochlorops... [more]
gi|299471518|emb|CBN80004.1|2.334e-1342.59expressed unknown protein [Ectocarpus siliculosus][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6672rna6672Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications